FFCP PHASE1:Hg19::chr12:50616382..50616505,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:50616382..50616505,-
|short_description=p1@LIMA1
|description=CAGE_peak_1_at_LIMA1_5end
|association_with_transcript=0bp_to_ENST00000420992,ENST0000055278...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51474 | |EntrezGene=51474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24636 | |HGNC=24636 | ||
|TSSclassifier=strong | |||
|UniProt=B4DN52,Q9UHB6 | |UniProt=B4DN52,Q9UHB6 | ||
|association_with_transcript=0bp_to_ENST00000420992,ENST00000552783,NM_001113547,uc001rwi.3_5end | |||
|cluster_id=chr12:50616382..50616505,- | |||
|coexpression_cluster_id=C3288 | |||
|description=CAGE_peak_1_at_LIMA1_5end | |||
|id=chr12:50616382..50616505,- | |||
|ontology_enrichment_celltype=CL:0000055!2.45e-27!180;CL:0000220!6.81e-20!246;CL:0002321!1.95e-19!248;CL:0000057!5.90e-16!75;CL:0000144!6.62e-14!625;CL:0000548!2.42e-13!679;CL:0000004!2.42e-13!679;CL:0000255!2.42e-13!679;CL:0000012!9.09e-13!682;CL:0000222!8.23e-12!119;CL:0002371!4.72e-11!591;CL:0000076!1.28e-09!62;CL:0000680!5.27e-09!57;CL:0000056!5.27e-09!57;CL:0000355!5.27e-09!57;CL:0002620!5.42e-09!23;CL:0000187!3.52e-08!54;CL:0000393!6.87e-08!60;CL:0000211!6.87e-08!60;CL:0000221!1.19e-07!71;CL:0000077!1.21e-07!19;CL:0000003!2.82e-07!722;CL:0000192!3.24e-07!42;CL:0000514!3.24e-07!42;CL:0000359!9.38e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.35e-09;23!CL:0000077;1.04e-07;19!CL:0000057;9.65e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.08e-20,250;CL:0000057,1.69e-16,76;CL:0000222,4.94e-12,121;CL:0000076,7.50e-10,63;CL:0000680,2.53e-09,58;CL:0000056,2.53e-09,58;CL:0000355,2.53e-09,58;CL:0002620,5.35e-09,23;CL:0000187,1.72e-08,55;CL:0000393,3.45e-08,61;CL:0000211,3.45e-08,61;CL:0000221,8.31e-08,72;CL:0000077,1.06e-07,19;CL:0000192,1.57e-07,43;CL:0000514,1.57e-07,43;CL:0000359,9.29e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!9.81e-14!95;UBERON:0000914!2.25e-11!83;UBERON:0002329!2.25e-11!83;UBERON:0003077!2.25e-11!83;UBERON:0003059!2.25e-11!83;UBERON:0007282!2.25e-11!83;UBERON:0009618!2.25e-11!83;UBERON:0007285!2.25e-11!83;UBERON:0000486!3.44e-11!82;UBERON:0002199!1.28e-10!45;UBERON:0002416!1.28e-10!45;UBERON:0002097!6.00e-10!40;UBERON:0004290!2.58e-08!70;UBERON:0004872!2.75e-08!84;UBERON:0001134!3.78e-08!61;UBERON:0002036!3.78e-08!61;UBERON:0003082!3.78e-08!61;UBERON:0002049!6.42e-08!79;UBERON:0007798!6.42e-08!79;UBERON:0002385!8.22e-08!63;UBERON:0001015!8.22e-08!63;UBERON:0000383!8.22e-08!63;UBERON:0001637!2.14e-07!42;UBERON:0003509!2.14e-07!42;UBERON:0004572!2.14e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.33e-08;41!UBERON:0002199;7.36e-08;46!UBERON:0002416;7.36e-08;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.34e-15,99;UBERON:0000486,1.65e-11,83;UBERON:0002199,8.10e-11,46;UBERON:0002416,8.10e-11,46;UBERON:0002097,3.80e-10,41;UBERON:0002329,1.31e-08,71;UBERON:0003059,1.31e-08,71;UBERON:0007282,1.31e-08,71;UBERON:0004290,1.31e-08,71;UBERON:0009618,1.31e-08,71;UBERON:0007524,1.50e-08,73;UBERON:0001134,1.89e-08,62;UBERON:0002036,1.89e-08,62;UBERON:0003082,1.89e-08,62;UBERON:0003077,3.37e-08,72;UBERON:0007285,3.37e-08,72;UBERON:0002385,4.17e-08,64;UBERON:0001015,4.17e-08,64;UBERON:0000383,4.17e-08,64;UBERON:0004872,6.21e-08,83;UBERON:0002049,1.45e-07,78;UBERON:0007798,1.45e-07,78;UBERON:0001637,2.12e-07,42;UBERON:0003509,2.12e-07,42;UBERON:0004572,2.12e-07,42;UBERON:0007503,2.84e-07,78 | |||
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| ||
|short_description=p1@LIMA1 | |||
}} | }} |
Latest revision as of 18:30, 18 September 2015
Short description: | p1@LIMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIMA1_5end |
Coexpression cluster: | C3288_Fibroblast_Urothelial_Preadipocyte_mesothelioma_Mallassezderived_Mesothelial_alveolar |
Association with transcript: | 0bp_to_ENST00000420992, ENST00000552783, NM_001113547, uc001rwi.3_5end |
EntrezGene: | LIMA1 |
HGNC: | 24636 |
UniProt: | B4DN52Q9UHB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.08e-20 | 250 |
fibroblast | 1.69e-16 | 76 |
mesodermal cell | 4.94e-12 | 121 |
squamous epithelial cell | 7.50e-10 | 63 |
muscle precursor cell | 2.53e-09 | 58 |
myoblast | 2.53e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.53e-09 | 58 |
skin fibroblast | 5.35e-09 | 23 |
muscle cell | 1.72e-08 | 55 |
electrically responsive cell | 3.45e-08 | 61 |
electrically active cell | 3.45e-08 | 61 |
ectodermal cell | 8.31e-08 | 72 |
mesothelial cell | 1.06e-07 | 19 |
smooth muscle cell | 1.57e-07 | 43 |
smooth muscle myoblast | 1.57e-07 | 43 |
vascular associated smooth muscle cell | 9.29e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.34e-15 | 99 |
multilaminar epithelium | 1.65e-11 | 83 |
integument | 8.10e-11 | 46 |
integumental system | 8.10e-11 | 46 |
skin of body | 3.80e-10 | 41 |
somite | 1.31e-08 | 71 |
presomitic mesoderm | 1.31e-08 | 71 |
presumptive segmental plate | 1.31e-08 | 71 |
dermomyotome | 1.31e-08 | 71 |
trunk paraxial mesoderm | 1.31e-08 | 71 |
dense mesenchyme tissue | 1.50e-08 | 73 |
skeletal muscle tissue | 1.89e-08 | 62 |
striated muscle tissue | 1.89e-08 | 62 |
myotome | 1.89e-08 | 62 |
paraxial mesoderm | 3.37e-08 | 72 |
presumptive paraxial mesoderm | 3.37e-08 | 72 |
muscle tissue | 4.17e-08 | 64 |
musculature | 4.17e-08 | 64 |
musculature of body | 4.17e-08 | 64 |
splanchnic layer of lateral plate mesoderm | 6.21e-08 | 83 |
vasculature | 1.45e-07 | 78 |
vascular system | 1.45e-07 | 78 |
artery | 2.12e-07 | 42 |
arterial blood vessel | 2.12e-07 | 42 |
arterial system | 2.12e-07 | 42 |
epithelial vesicle | 2.84e-07 | 78 |