FFCP PHASE1:Hg19::chr4:77357010..77357040,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:77357010..77357040,+ to FFCP PHASE1:Hg19::chr4:77357010..77357040,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-224bp_to_ENST00000497440_5end | |||
|cluster_id=chr4:77357010..77357040,+ | |||
|coexpression_cluster_id=C1944 | |||
|description=CAGE_peak_6_at_SHROOM3_5end | |||
|id=chr4:77357010..77357040,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.54e-16!25;CL:0000047!1.93e-14!8;CL:0000133!2.52e-14!59;CL:0000128!3.30e-13!7;CL:0000126!3.30e-13!7;CL:0000127!3.30e-13!7;CL:0002453!3.30e-13!7;CL:0000540!5.57e-11!6;CL:0000031!5.57e-11!6;CL:0000404!5.57e-11!6;CL:0000221!1.16e-10!71;CL:0002322!8.28e-09!5;CL:0000243!2.17e-07!15;CL:0000125!2.17e-07!15;CL:0000030!2.17e-07!15;CL:0000339!2.17e-07!15;CL:0000075!4.89e-07!27;CL:0002605!5.01e-07!3;CL:0000064!5.82e-07!3;CL:0005012!5.82e-07!3;CL:0000067!5.82e-07!3;CL:0002304!5.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002319;7.37e-28;25!CL:0000128;1.44e-25;7!CL:0000126;1.44e-25;7!CL:0000127;1.44e-25;7!CL:0002605;2.82e-16;3!CL:0000064;4.22e-16;3!CL:0000067;4.22e-16;3!CL:0005012;4.22e-16;3!CL:0002304;4.22e-16;3!CL:0002603;1.96e-15;3!CL:0000243;1.65e-13;15!CL:0000125;1.65e-13;15!CL:0000540;8.95e-13;6!CL:0000404;8.95e-13;6!CL:0000095;5.53e-12;17!CL:0000306;9.17e-12;4!CL:0002222;9.17e-12;4!CL:0002224;9.17e-12;4!CL:0000047;4.71e-11;2!CL:0000075;1.55e-10;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.77e-28,25;CL:0000128,2.20e-25,7;CL:0000126,2.20e-25,7;CL:0000127,2.20e-25,7;CL:0002453,2.20e-25,7;CL:0000133,5.39e-22,59;CL:0000047,2.04e-21,8;CL:0000221,2.12e-17,72;CL:0002605,2.83e-16,3;CL:0000064,4.23e-16,3;CL:0000067,4.23e-16,3;CL:0005012,4.23e-16,3;CL:0002304,4.23e-16,3;CL:0002603,3.19e-15,3;CL:0000243,1.90e-13,15;CL:0000125,1.90e-13,15;CL:0000030,1.90e-13,15;CL:0000339,1.90e-13,15;CL:0000540,5.79e-13,6;CL:0000031,5.79e-13,6;CL:0000404,5.79e-13,6;CL:0000095,6.24e-12,17;CL:0000123,6.24e-12,17;CL:0000306,1.06e-11,4;CL:0002222,1.06e-11,4;CL:0002224,1.06e-11,4;CL:0000075,1.62e-10,27;CL:0000333,1.05e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000339;1.65e-13;15!CL:0000031;8.95e-13;6!CL:0000133;8.55e-12;59!UBERON:0006241;4.40e-07;3!UBERON:0003057;4.40e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!6.81e-43!86;UBERON:0001017!6.20e-38!82;UBERON:0000073!2.63e-37!94;UBERON:0001016!2.63e-37!94;UBERON:0003075!1.25e-36!86;UBERON:0007284!1.25e-36!86;UBERON:0002346!2.61e-34!90;UBERON:0001049!8.74e-29!57;UBERON:0005068!8.74e-29!57;UBERON:0006241!8.74e-29!57;UBERON:0007135!8.74e-29!57;UBERON:0000955!4.80e-24!69;UBERON:0006238!4.80e-24!69;UBERON:0003056!5.02e-24!61;UBERON:0004121!5.35e-24!169;UBERON:0002616!1.02e-23!59;UBERON:0000924!5.04e-23!173;UBERON:0006601!5.04e-23!173;UBERON:0000033!1.23e-22!123;UBERON:0000153!6.89e-21!129;UBERON:0007811!6.89e-21!129;UBERON:0003076!2.11e-16!15;UBERON:0003057!2.11e-16!15;UBERON:0007625!3.46e-16!11;UBERON:0002780!5.62e-16!41;UBERON:0001890!5.62e-16!41;UBERON:0006240!5.62e-16!41;UBERON:0001893!1.90e-15!34;UBERON:0003080!1.92e-15!42;UBERON:0002020!2.02e-15!34;UBERON:0003528!2.02e-15!34;UBERON:0001869!4.97e-15!32;UBERON:0000956!7.92e-15!25;UBERON:0000203!7.92e-15!25;UBERON:0002791!1.61e-14!33;UBERON:0004733!3.46e-12!12;UBERON:0002028!3.46e-12!12;UBERON:0007277!3.46e-12!12;UBERON:0004732!4.57e-11!13;UBERON:0002619!9.80e-11!22;UBERON:0001950!1.77e-10!20;UBERON:0000019!8.52e-10!19;UBERON:0000047!8.52e-10!19;UBERON:0004088!8.52e-10!19;UBERON:0003072!8.52e-10!19;UBERON:0003071!8.52e-10!19;UBERON:0004128!8.52e-10!19;UBERON:0000970!3.68e-09!20;UBERON:0002104!1.37e-08!21;UBERON:0001456!1.37e-08!21;UBERON:0000488!1.59e-08!4;UBERON:0002680!2.01e-08!9;UBERON:0001895!2.01e-08!9;UBERON:0010092!2.01e-08!9;UBERON:0000020!1.34e-07!23;UBERON:0001032!3.62e-07!24;UBERON:0004456!3.62e-07!24;UBERON:0001778!5.82e-07!3;UBERON:0001775!5.82e-07!3;UBERON:0000025!9.87e-07!194;UBERON:0002298!9.97e-07!8;UBERON:0007023!9.97e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.00e-27;11!UBERON:0000488;2.58e-20;4!UBERON:0001801;1.44e-16;14!UBERON:0001778;4.22e-16;3!UBERON:0001775;4.22e-16;3!UBERON:0000019;1.63e-15;19!UBERON:0000047;1.63e-15;19!UBERON:0004088;1.63e-15;19!UBERON:0010230;1.63e-15;19!UBERON:0000970;1.13e-14;20!UBERON:0002104;6.50e-14;21!UBERON:0001456;6.50e-14;21!UBERON:0002203;1.38e-13;6!UBERON:0001768;1.38e-13;6!UBERON:0002200;1.38e-13;6!UBERON:0000020;1.37e-12;23!UBERON:0001032;5.17e-12;24!UBERON:0004456;5.17e-12;24!UBERON:0010077;9.17e-12;4!UBERON:0005389;9.17e-12;4!UBERON:0000484;9.17e-12;4!UBERON:0000965;9.17e-12;4!UBERON:0001803;9.17e-12;4!UBERON:0010371;1.71e-08;31!UBERON:0002037;6.04e-08;6!UBERON:0006876;1.95e-07;11!UBERON:0002240;4.40e-07;3!UBERON:0005174;4.40e-07;3!UBERON:0001137;4.40e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.16e-27,11;UBERON:0000488,2.72e-20,4;UBERON:0003075,7.53e-17,82;UBERON:0007284,7.53e-17,82;UBERON:0001801,1.63e-16,14;UBERON:0001778,4.23e-16,3;UBERON:0001775,4.23e-16,3;UBERON:0002346,7.10e-16,86;UBERON:0001017,9.65e-15,81;UBERON:0000019,1.22e-14,20;UBERON:0000047,1.22e-14,20;UBERON:0010312,1.22e-14,20;UBERON:0004088,1.22e-14,20;UBERON:0010230,1.22e-14,20;UBERON:0003072,1.22e-14,20;UBERON:0004128,1.22e-14,20;UBERON:0003071,1.22e-14,20;UBERON:0000970,6.99e-14,21;UBERON:0002104,6.99e-14,21;UBERON:0002203,1.43e-13,6;UBERON:0001768,1.43e-13,6;UBERON:0002200,1.43e-13,6;UBERON:0001456,3.42e-13,22;UBERON:0004121,5.06e-13,171;UBERON:0000924,5.06e-13,171;UBERON:0006601,5.06e-13,171;UBERON:0001016,6.63e-13,89;UBERON:0010314,1.53e-12,132;UBERON:0010371,2.05e-12,104;UBERON:0000020,5.51e-12,24;UBERON:0001032,5.51e-12,24;UBERON:0004456,5.51e-12,24;UBERON:0010077,1.06e-11,4;UBERON:0005389,1.06e-11,4;UBERON:0000484,1.06e-11,4;UBERON:0002546,1.06e-11,4;UBERON:0000965,1.06e-11,4;UBERON:0001803,1.06e-11,4;UBERON:0003073,1.06e-11,4;UBERON:0005426,1.06e-11,4;UBERON:0003076,7.83e-11,15;UBERON:0003057,7.83e-11,15;UBERON:0003056,9.45e-11,61;UBERON:0005085,5.44e-09,31;UBERON:0001049,3.90e-08,56;UBERON:0005068,3.90e-08,56;UBERON:0006241,3.90e-08,56;UBERON:0007135,3.90e-08,56;UBERON:0002037,7.66e-08,6;UBERON:0006215,7.66e-08,6;UBERON:0006876,1.99e-07,11;UBERON:0002240,3.76e-07,3;UBERON:0005174,3.76e-07,3;UBERON:0001137,3.76e-07,3 | |||
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| ||
|short_description=p6@SHROOM3 | |||
}} | }} |
Latest revision as of 18:00, 18 September 2015
Short description: | p6@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SHROOM3_5end |
Coexpression cluster: | C1944_Astrocyte_Ciliary_Lens_colon_teratocarcinoma_gastric_Neural |
Association with transcript: | -224bp_to_ENST00000497440_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.77e-28 | 25 |
oligodendrocyte | 2.20e-25 | 7 |
macroglial cell | 2.20e-25 | 7 |
astrocyte | 2.20e-25 | 7 |
oligodendrocyte precursor cell | 2.20e-25 | 7 |
neurectodermal cell | 5.39e-22 | 59 |
neuronal stem cell | 2.04e-21 | 8 |
ectodermal cell | 2.12e-17 | 72 |
astrocyte of the cerebral cortex | 2.83e-16 | 3 |
ciliated cell | 4.23e-16 | 3 |
ciliated epithelial cell | 4.23e-16 | 3 |
multi-ciliated epithelial cell | 4.23e-16 | 3 |
non-pigmented ciliary epithelial cell | 4.23e-16 | 3 |
astrocyte of the cerebellum | 3.19e-15 | 3 |
glial cell (sensu Vertebrata) | 1.90e-13 | 15 |
glial cell | 1.90e-13 | 15 |
glioblast | 1.90e-13 | 15 |
glioblast (sensu Vertebrata) | 1.90e-13 | 15 |
neuron | 5.79e-13 | 6 |
neuroblast | 5.79e-13 | 6 |
electrically signaling cell | 5.79e-13 | 6 |
neuron associated cell | 6.24e-12 | 17 |
neuron associated cell (sensu Vertebrata) | 6.24e-12 | 17 |
crystallin accumulating cell | 1.06e-11 | 4 |
vertebrate lens cell | 1.06e-11 | 4 |
lens epithelial cell | 1.06e-11 | 4 |
columnar/cuboidal epithelial cell | 1.62e-10 | 27 |
migratory neural crest cell | 1.05e-07 | 41 |