FFCP PHASE1:Hg19::chr11:61659061..61659079,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:61659061..61659079,- to FFCP PHASE1:Hg19::chr11:61659061..61659079,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3995 | |EntrezGene=3995 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3576 | |HGNC=3576 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5Q0 | |UniProt=Q9Y5Q0 | ||
|association_with_transcript=-55bp_to_ENST00000278829,NM_021727,uc001nsm.2_5end | |||
|cluster_id=chr11:61659061..61659079,- | |||
|description=CAGE_peak_4_at_FADS3_5end | |||
|id=chr11:61659061..61659079,- | |||
|ontology_enrichment_celltype=CL:0002321!3.04e-18!248;CL:0000220!2.19e-17!246;CL:0000055!2.89e-14!180;CL:0000222!4.43e-13!119;CL:0000012!7.60e-13!682;CL:0000548!1.72e-12!679;CL:0000004!1.72e-12!679;CL:0000255!1.72e-12!679;CL:0000066!2.52e-12!254;CL:0000144!1.81e-09!625;CL:0002078!4.57e-09!44;CL:0000213!8.33e-09!57;CL:0000215!8.33e-09!57;CL:0002139!4.62e-08!24;CL:0000115!1.56e-07!35;CL:0000057!2.28e-07!75;CL:0000076!9.35e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.88e-08;24!CL:0002078;3.66e-07;45!CL:0000115;4.66e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.30e-20,250;CL:0000222,9.69e-15,121;CL:0000066,9.35e-12,253;CL:0002078,2.32e-10,45;CL:0000213,8.55e-10,58;CL:0000215,8.55e-10,58;CL:0000115,1.23e-08,36;CL:0002139,1.53e-08,24;CL:0000057,3.58e-07,76;CL:0000071,6.53e-07,18;CL:0002546,6.53e-07,18 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!5.63e-11!118;UBERON:0002049!7.80e-11!79;UBERON:0007798!7.80e-11!79;UBERON:0000055!3.02e-10!69;UBERON:0000119!6.29e-10!312;UBERON:0000483!7.37e-10!309;UBERON:0001981!1.57e-08!60;UBERON:0007500!1.57e-08!60;UBERON:0004537!1.57e-08!60;UBERON:0006965!1.57e-08!60;UBERON:0001009!1.75e-07!113;UBERON:0004872!2.02e-07!84;UBERON:0004535!2.06e-07!110;UBERON:0000475!2.58e-07!365;UBERON:0005256!2.77e-07!143;UBERON:0000486!5.64e-07!82;UBERON:0002100!8.25e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000055;6.47e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,1.61e-11,117;UBERON:0002049,3.14e-11,78;UBERON:0007798,3.14e-11,78;UBERON:0000055,8.82e-11,68;UBERON:0007500,6.58e-09,59;UBERON:0001981,6.58e-09,59;UBERON:0004537,6.58e-09,59;UBERON:0006965,6.58e-09,59;UBERON:0000119,1.27e-08,309;UBERON:0000483,1.49e-08,306;UBERON:0004872,4.55e-08,83;UBERON:0000490,1.05e-07,148;UBERON:0004535,1.28e-07,109;UBERON:0003104,1.53e-07,160;UBERON:0009142,1.53e-07,160;UBERON:0001009,1.60e-07,112;UBERON:0000486,3.24e-07,83;UBERON:0007503,5.66e-07,78;UBERON:0004638,6.53e-07,18;UBERON:0001986,6.53e-07,18;UBERON:0004852,6.53e-07,18 | |||
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| ||
|short_description=p4@FADS3 | |||
}} | }} |
Latest revision as of 17:28, 18 September 2015
Short description: | p4@FADS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_FADS3_5end |
Coexpression cluster: | NA |
Association with transcript: | -55bp_to_ENST00000278829, NM_021727, uc001nsm.2_5end |
EntrezGene: | FADS3 |
HGNC: | 3576 |
UniProt: | Q9Y5Q0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.30e-20 | 250 |
mesodermal cell | 9.69e-15 | 121 |
epithelial cell | 9.35e-12 | 253 |
meso-epithelial cell | 2.32e-10 | 45 |
lining cell | 8.55e-10 | 58 |
barrier cell | 8.55e-10 | 58 |
endothelial cell | 1.23e-08 | 36 |
endothelial cell of vascular tree | 1.53e-08 | 24 |
fibroblast | 3.58e-07 | 76 |
blood vessel endothelial cell | 6.53e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.53e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.61e-11 | 117 |
vasculature | 3.14e-11 | 78 |
vascular system | 3.14e-11 | 78 |
vessel | 8.82e-11 | 68 |
epithelial tube open at both ends | 6.58e-09 | 59 |
blood vessel | 6.58e-09 | 59 |
blood vasculature | 6.58e-09 | 59 |
vascular cord | 6.58e-09 | 59 |
cell layer | 1.27e-08 | 309 |
epithelium | 1.49e-08 | 306 |
splanchnic layer of lateral plate mesoderm | 4.55e-08 | 83 |
unilaminar epithelium | 1.05e-07 | 148 |
cardiovascular system | 1.28e-07 | 109 |
mesenchyme | 1.53e-07 | 160 |
entire embryonic mesenchyme | 1.53e-07 | 160 |
circulatory system | 1.60e-07 | 112 |
multilaminar epithelium | 3.24e-07 | 83 |
epithelial vesicle | 5.66e-07 | 78 |
blood vessel endothelium | 6.53e-07 | 18 |
endothelium | 6.53e-07 | 18 |
cardiovascular system endothelium | 6.53e-07 | 18 |