FFCP PHASE1:Hg19::chr7:44530394..44530452,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23386 | |EntrezGene=23386 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22208 | |HGNC=22208 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IVD9 | |UniProt=Q8IVD9 | ||
|association_with_transcript=-9bp_to_NM_015332,uc003tkz.2_5end | |association_with_transcript=-9bp_to_NM_015332,uc003tkz.2_5end | ||
|cluster_id=chr7:44530394..44530452,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_NUDCD3_5end | |description=CAGE_peak_2_at_NUDCD3_5end | ||
|id=chr7:44530394..44530452,- | |id=chr7:44530394..44530452,- | ||
|ontology_enrichment_celltype=CL:0000542!7.12e-15!53;CL:0000051!7.12e-15!53;CL:0000838!8.79e-15!52;CL:0000791!1.77e-12!18;CL:0000789!1.77e-12!18;CL:0002420!1.77e-12!18;CL:0002419!1.77e-12!18;CL:0000790!1.77e-12!18;CL:0000115!1.54e-11!35;CL:0000084!5.18e-11!25;CL:0000827!5.18e-11!25;CL:0002139!3.30e-09!24;CL:0000037!6.27e-09!172;CL:0000566!6.27e-09!172;CL:0000625!2.70e-08!11;CL:0002087!4.78e-08!119;CL:0000988!5.82e-08!182;CL:0002078!9.85e-08!44;CL:0000236!1.22e-07!14;CL:0000738!2.66e-07!140;CL:0002032!4.60e-07!165;CL:0000837!4.60e-07!165;CL:0002031!5.15e-07!124;CL:0000071!5.75e-07!18;CL:0002546!5.75e-07!18 | |ontology_enrichment_celltype=CL:0000542!7.12e-15!53;CL:0000051!7.12e-15!53;CL:0000838!8.79e-15!52;CL:0000791!1.77e-12!18;CL:0000789!1.77e-12!18;CL:0002420!1.77e-12!18;CL:0002419!1.77e-12!18;CL:0000790!1.77e-12!18;CL:0000115!1.54e-11!35;CL:0000084!5.18e-11!25;CL:0000827!5.18e-11!25;CL:0002139!3.30e-09!24;CL:0000037!6.27e-09!172;CL:0000566!6.27e-09!172;CL:0000625!2.70e-08!11;CL:0002087!4.78e-08!119;CL:0000988!5.82e-08!182;CL:0002078!9.85e-08!44;CL:0000236!1.22e-07!14;CL:0000738!2.66e-07!140;CL:0002032!4.60e-07!165;CL:0000837!4.60e-07!165;CL:0002031!5.15e-07!124;CL:0000071!5.75e-07!18;CL:0002546!5.75e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.98e-15;18!CL:0000789;1.98e-15;18!CL:0002419;1.98e-15;18!CL:0000084;2.87e-13;25!CL:0000115;1.90e-12;36!CL:0000542;2.35e-11;53!CL:0002139;2.61e-11;24!CL:0000625;3.66e-10;11!CL:0000236;6.15e-10;13!CL:0000071;1.28e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.41e-17,53;CL:0000051,3.41e-17,53;CL:0000838,4.51e-17,52;CL:0000791,2.51e-15,18;CL:0000789,2.51e-15,18;CL:0002420,2.51e-15,18;CL:0002419,2.51e-15,18;CL:0000790,2.51e-15,18;CL:0000115,1.09e-14,36;CL:0000084,2.19e-13,25;CL:0000827,2.19e-13,25;CL:0002139,1.04e-11,24;CL:0000037,3.39e-10,168;CL:0000625,4.71e-10,11;CL:0002078,3.53e-09,45;CL:0000988,4.64e-09,177;CL:0000071,7.03e-09,18;CL:0002546,7.03e-09,18;CL:0000236,1.00e-08,14;CL:0000738,5.20e-08,136;CL:0002087,5.69e-08,115;CL:0002032,6.50e-08,161;CL:0000837,6.50e-08,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.98e-15;18!CL:0000051;2.35e-11;53!CL:0002546;1.28e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.23e-16!115;UBERON:0001049!9.53e-09!57;UBERON:0005068!9.53e-09!57;UBERON:0006241!9.53e-09!57;UBERON:0007135!9.53e-09!57;UBERON:0001893!2.36e-08!34;UBERON:0002791!3.52e-08!33;UBERON:0001869!3.95e-08!32;UBERON:0002020!6.03e-08!34;UBERON:0003528!6.03e-08!34;UBERON:0002616!8.83e-08!59;UBERON:0000073!1.69e-07!94;UBERON:0001016!1.69e-07!94;UBERON:0001017!1.87e-07!82;UBERON:0000955!2.44e-07!69;UBERON:0006238!2.44e-07!69;UBERON:0005743!2.71e-07!86;UBERON:0001986!5.75e-07!18;UBERON:0004638!5.75e-07!18;UBERON:0004852!5.75e-07!18;UBERON:0002619!6.64e-07!22;UBERON:0002780!6.88e-07!41;UBERON:0001890!6.88e-07!41;UBERON:0006240!6.88e-07!41;UBERON:0003080!8.91e-07!42 | |ontology_enrichment_uberon=UBERON:0007023!8.23e-16!115;UBERON:0001049!9.53e-09!57;UBERON:0005068!9.53e-09!57;UBERON:0006241!9.53e-09!57;UBERON:0007135!9.53e-09!57;UBERON:0001893!2.36e-08!34;UBERON:0002791!3.52e-08!33;UBERON:0001869!3.95e-08!32;UBERON:0002020!6.03e-08!34;UBERON:0003528!6.03e-08!34;UBERON:0002616!8.83e-08!59;UBERON:0000073!1.69e-07!94;UBERON:0001016!1.69e-07!94;UBERON:0001017!1.87e-07!82;UBERON:0000955!2.44e-07!69;UBERON:0006238!2.44e-07!69;UBERON:0005743!2.71e-07!86;UBERON:0001986!5.75e-07!18;UBERON:0004638!5.75e-07!18;UBERON:0004852!5.75e-07!18;UBERON:0002619!6.64e-07!22;UBERON:0002780!6.88e-07!41;UBERON:0001890!6.88e-07!41;UBERON:0006240!6.88e-07!41;UBERON:0003080!8.91e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.28e-08;18!UBERON:0001986;1.28e-08;18!UBERON:0004852;1.28e-08;18!UBERON:0002791;4.52e-08;32!UBERON:0001869;5.14e-08;32!UBERON:0001893;1.01e-07;34!UBERON:0003528;2.07e-07;34!UBERON:0002020;2.07e-07;34!UBERON:0002619;2.27e-07;22!UBERON:0002193;3.20e-07;42!UBERON:0001950;6.10e-07;20 | |||
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| ||
|short_description=p2@NUDCD3 | |short_description=p2@NUDCD3 | ||
}} | }} |
Latest revision as of 17:18, 18 September 2015
Short description: | p2@NUDCD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NUDCD3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -9bp_to_NM_015332, uc003tkz.2_5end |
EntrezGene: | NUDCD3 |
HGNC: | 22208 |
UniProt: | Q8IVD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.41e-17 | 53 |
common lymphoid progenitor | 3.41e-17 | 53 |
lymphoid lineage restricted progenitor cell | 4.51e-17 | 52 |
mature alpha-beta T cell | 2.51e-15 | 18 |
alpha-beta T cell | 2.51e-15 | 18 |
immature T cell | 2.51e-15 | 18 |
mature T cell | 2.51e-15 | 18 |
immature alpha-beta T cell | 2.51e-15 | 18 |
endothelial cell | 1.09e-14 | 36 |
T cell | 2.19e-13 | 25 |
pro-T cell | 2.19e-13 | 25 |
endothelial cell of vascular tree | 1.04e-11 | 24 |
hematopoietic stem cell | 3.39e-10 | 168 |
CD8-positive, alpha-beta T cell | 4.71e-10 | 11 |
meso-epithelial cell | 3.53e-09 | 45 |
hematopoietic cell | 4.64e-09 | 177 |
blood vessel endothelial cell | 7.03e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.03e-09 | 18 |
B cell | 1.00e-08 | 14 |
leukocyte | 5.20e-08 | 136 |
nongranular leukocyte | 5.69e-08 | 115 |
hematopoietic oligopotent progenitor cell | 6.50e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.50e-08 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.65e-16 | 114 |
neural tube | 6.50e-10 | 56 |
neural rod | 6.50e-10 | 56 |
future spinal cord | 6.50e-10 | 56 |
neural keel | 6.50e-10 | 56 |
telencephalon | 1.66e-09 | 34 |
cerebral hemisphere | 3.22e-09 | 32 |
regional part of telencephalon | 4.18e-09 | 32 |
regional part of nervous system | 4.32e-09 | 53 |
regional part of brain | 4.32e-09 | 53 |
blood vessel endothelium | 7.03e-09 | 18 |
endothelium | 7.03e-09 | 18 |
cardiovascular system endothelium | 7.03e-09 | 18 |
brain grey matter | 1.24e-08 | 34 |
gray matter | 1.24e-08 | 34 |
regional part of forebrain | 4.06e-08 | 41 |
forebrain | 4.06e-08 | 41 |
anterior neural tube | 4.06e-08 | 41 |
future forebrain | 4.06e-08 | 41 |
regional part of cerebral cortex | 1.01e-07 | 22 |
neocortex | 3.42e-07 | 20 |
central nervous system | 6.63e-07 | 81 |
brain | 9.66e-07 | 68 |
future brain | 9.66e-07 | 68 |