FFCP PHASE1:Hg19::chr15:67418099..67418118,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z9Q2,P84022 | |UniProt=B7Z9Q2,P84022 | ||
|association_with_transcript=45bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | |association_with_transcript=45bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | ||
|cluster_id=chr15:67418099..67418118,+ | |||
|coexpression_cluster_id=C2343 | |||
|description=CAGE_peak_16_at_SMAD3_5end | |description=CAGE_peak_16_at_SMAD3_5end | ||
|id=chr15:67418099..67418118,+ | |id=chr15:67418099..67418118,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.88e-22!254;CL:0000220!4.53e-11!246;CL:0002321!1.00e-10!248;CL:0000548!3.70e-10!679;CL:0000004!3.70e-10!679;CL:0000255!3.70e-10!679;CL:0000012!8.70e-10!682;CL:0000076!2.67e-09!62;CL:0000359!3.67e-07!32;CL:0000222!4.36e-07!119;CL:0000077!7.72e-07!19 | |ontology_enrichment_celltype=CL:0000066!1.88e-22!254;CL:0000220!4.53e-11!246;CL:0002321!1.00e-10!248;CL:0000548!3.70e-10!679;CL:0000004!3.70e-10!679;CL:0000255!3.70e-10!679;CL:0000012!8.70e-10!682;CL:0000076!2.67e-09!62;CL:0000359!3.67e-07!32;CL:0000222!4.36e-07!119;CL:0000077!7.72e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:1000306;1.36e-08;4!CL:0002547;1.36e-08;4!CL:0000359;5.96e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.99e-14,253;CL:0000076,2.60e-10,63;CL:1000306,2.22e-08,4;CL:0002547,2.22e-08,4;CL:0000359,3.47e-07,32 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.63e-11;29 | |||
|ontology_enrichment_disease=DOID:305!1.92e-16!106;DOID:0050687!1.30e-11!143;DOID:1749!3.08e-10!14;DOID:162!2.37e-07!235;DOID:14566!6.05e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.58e-18;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.06e-19,106;DOID:1749,2.85e-18,14;DOID:0050687,2.63e-15,143;DOID:162,2.55e-11,235;DOID:14566,8.01e-11,239;DOID:1324,8.53e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0000481!1.12e-11!347;UBERON:0001048!3.77e-11!168;UBERON:0004119!1.21e-10!169;UBERON:0000925!1.21e-10!169;UBERON:0006595!1.21e-10!169;UBERON:0001007!3.64e-10!155;UBERON:0001555!3.64e-10!155;UBERON:0007026!3.64e-10!155;UBERON:0003104!1.78e-09!238;UBERON:0009142!1.78e-09!238;UBERON:0001004!2.20e-09!72;UBERON:0000119!1.21e-08!312;UBERON:0000475!3.41e-08!365;UBERON:0000483!5.18e-08!309;UBERON:0000072!6.26e-08!46;UBERON:0000065!7.25e-08!53;UBERON:0002100!2.26e-07!216;UBERON:0001737!3.02e-07!9;UBERON:0000477!3.62e-07!286;UBERON:0001637!5.82e-07!42;UBERON:0003509!5.82e-07!42;UBERON:0004572!5.82e-07!42;UBERON:0000077!6.32e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.75e-10;9!UBERON:0001557;1.75e-10;9!UBERON:0004797;1.36e-08;4!UBERON:0000415;1.36e-08;4!UBERON:0007240;1.36e-08;4!UBERON:0005742;1.36e-08;4!UBERON:0005734;1.36e-08;4!UBERON:0004664;1.36e-08;4!UBERON:0004663;1.36e-08;4!UBERON:0000072;5.42e-08;37!UBERON:0001637;6.26e-07;42!UBERON:0003509;6.26e-07;42!UBERON:0004572;6.26e-07;42!UBERON:0004573;8.85e-07;33!UBERON:0004571;8.85e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.99e-10,9;UBERON:0008947,2.40e-09,38;UBERON:0003258,2.40e-09,38;UBERON:0001637,4.23e-09,42;UBERON:0003509,4.23e-09,42;UBERON:0004572,4.23e-09,42;UBERON:0000415,2.22e-08,4;UBERON:0007240,2.22e-08,4;UBERON:0005742,2.22e-08,4;UBERON:0005734,2.22e-08,4;UBERON:0004664,2.22e-08,4;UBERON:0004663,2.22e-08,4;UBERON:0004573,4.95e-08,33;UBERON:0004571,4.95e-08,33;UBERON:0000072,5.19e-08,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0,0.218441372130172,0,0.37129905888014,0,0,0,0,0,0.369363174230364,0.408001382488506,0.626909442956176,0,0,0,0,0,0,0,0,0,0,1.204823675113,0.369754010166788,0,0,0,1.10799081706375,0,0.434021741431704,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0.50133791063589,0,0,0,0.189069634328136,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0.347140501607594,0,0,0,0,0,0.71153252537342,0.33472061276467,0.805658634218294,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0.872188104285069,0,1.13967460498122,1.32409180813219,1.14734648299525,1.41867352879343,0,2.1349799145941,1.48000529050296,0.622422070799533,0.134710672069688,0.490385709340376,0,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0.204154171254893,0.368502951935304,0.206651562351531,0,0.741800787835671,0,0,0,0.500474079487857,1.10825646193673,0,0,0.150238058906597,0.567160915800105,0.358779271377724,0,0,0,0,0.257640540045629,0,0,0,0,0,2.7479829659198,0.355009592516614,0,0.169560592310488,0.386521706326594,1.09098448236334,0.860413786167011,0,0,0,0,0,0,0,0,0,0.928735856063958,0,1.30137480043828,0.505754070234305,0.482022059766964,1.10293972732394,1.52515610864684,1.18635309555548,1.48314438976181,1.56977172100277,1.15424147083917,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,1.1240175325762,0.402115889646523,0.185176890317059,0.977424915930974,3.11980435583874,0,0,0.352226082707465,0,0,0.190254152234598,3.95102198979638,0.858486162094873,0,0,0,0.93733833986777,1.00789276919316,0.283550194484773,0.53735113621709,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,1.30788020649984,0.22001485746285,0,0,0,0,0,0.514414748524284,0,0.532844358032199,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,1.42636905040718,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,1.00034104211935,0.271265023699736,1.24782516918484,0,0.157702415033935,0.35142424497814,0,0,0,0,0.184369168541703,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.154209693802656,0.355123450626254,0,0.519254429183621,0.116210378459959,0,1.80455823272956,0.184161977871793,0.229628896329213,0.182091168006717,0.917870904715969,0.451199612907412,0.15403067420883,0.784349769176855,0,0.211103257785751,0,1.19065593693561,0,0,0,0,0.254876273045038,0,0,0,0,0.256450125116389,0.984043937099117,0.325378394664303,0,0,0,1.14853107599234,0,0,0.096670718292122,0,0,0,0.107420244868274,0.435050081742686,0.0852266274161009,0.178064071293475,0.165284915360978,0.192190067365106,0.765676274967505,0.30347334256665,0,0.31481234683064,1.3940745403212,1.54016790088044,2.66153015158511,3.47973196830029,0.9266210955196,0.572499546967965,0,0,0.38126038784765,0,0,0.636406495851874,2.35484592059769,0.179872457583315,0,0.117812402345686,1.41527737101321,1.58510321173008,0.421258456238981,1.46290121726877,0.243713489631284,0,0,0.141405431953713,0,1.10273068709225,1.32687795048244,0.876901770507525,0.578775534266688,0,1.62328301570163,1.54911749049875,1.12678241012897,0.143411352204052,0,0.7133421029625,0,0.422215270595328,0,1.13841952129715,2.79947776195986,0.48111056362756,0.670302275535787,0,0,0.86101074534246,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.334330152832435,0,0,0.593929361665277,0,0,0,0.445234820091624,0.494411622680279,0,0,0,0,0.511343412510774,0,0.311039587661807,3.95420745048238,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,1.04171104434093,0.349839999984783,0,1.0241410345695,3.30529745380596,0,0,0,0.173624994933292,0,0,0,0,0,0,1.74301541630384,0.278847488557207,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,1.14262965711403,0,0,0,0,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,0,0,5.31723098165748,7.94380694101197,6.59259128655173,8.36307008410712,0,0,0,3.33174151208884,3.3082498500553,0,1.37588825977293,0.387025325156341,0.219267951258557,0.410577285266046,0.193978032976839,0,0,2.46675464364152,1.78843150532691,0,0.586654148204409,0.961905843018405,0,0.39961921916426,0,0,0,0.720273989940749,0.869767748958028,0,0,0.104602846312333,0.101998217636322,0,0,0,0,1.71906176567983,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,3.16801009558219,0,2.30298236783334,0,0.662091970365432,0,0,0,0,3.59190574687462,0,0,0.79318464064088,0,0,0,0,1.53978154095896,1.40963004463334,0,0,0,0,0,0,4.46838880439127,0,0.2506898940227,0.306345576763462,0,0.157054096250234,0,0,0,0,0,0,0,0.37494122388632,0,0,4.23478475456709,0,0.144921028610825,0.149254802886874,0.233713309847224,0,0,0,0,0.228840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| ||
|short_description=p16@SMAD3 | |short_description=p16@SMAD3 | ||
}} | }} |
Latest revision as of 17:16, 18 September 2015
Short description: | p16@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_SMAD3_5end |
Coexpression cluster: | C2343_squamous_malignant_meningioma_embryonic_mesothelioma_bile_papillotubular |
Association with transcript: | 45bp_to_ENST00000540846, NM_001145102, uc010ujr.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | B7Z9Q2P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.99e-14 | 253 |
squamous epithelial cell | 2.60e-10 | 63 |
fibroblast of tunica adventitia of artery | 2.22e-08 | 4 |
fibroblast of the aortic adventitia | 2.22e-08 | 4 |
vascular associated smooth muscle cell | 3.47e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.99e-10 | 9 |
respiratory primordium | 2.40e-09 | 38 |
endoderm of foregut | 2.40e-09 | 38 |
artery | 4.23e-09 | 42 |
arterial blood vessel | 4.23e-09 | 42 |
arterial system | 4.23e-09 | 42 |
artery wall | 2.22e-08 | 4 |
tunica adventitia of artery | 2.22e-08 | 4 |
adventitia | 2.22e-08 | 4 |
tunica adventitia of blood vessel | 2.22e-08 | 4 |
aorta tunica adventitia | 2.22e-08 | 4 |
aorta wall | 2.22e-08 | 4 |
systemic artery | 4.95e-08 | 33 |
systemic arterial system | 4.95e-08 | 33 |
segment of respiratory tract | 5.19e-08 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.06e-19 | 106 |
squamous cell carcinoma | 2.85e-18 | 14 |
cell type cancer | 2.63e-15 | 143 |
cancer | 2.55e-11 | 235 |
disease of cellular proliferation | 8.01e-11 | 239 |
lung cancer | 8.53e-07 | 15 |