FFCP PHASE1:Hg19::chr19:45908292..45908374,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:45908292..45908374,- to FFCP PHASE1:Hg19::chr19:45908292..45908374,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10848 | |EntrezGene=10848 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18838 | |HGNC=18838 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WUF5 | |UniProt=Q8WUF5 | ||
|association_with_transcript=0bp_to_ENST00000360957,NM_006663,uc002pbn.2_5end | |||
|cluster_id=chr19:45908292..45908374,- | |||
|coexpression_cluster_id=C3802 | |||
|description=CAGE_peak_1_at_PPP1R13L_5end | |||
|id=chr19:45908292..45908374,- | |||
|ontology_enrichment_celltype=CL:0000066!6.82e-45!254;CL:0000076!1.63e-14!62;CL:0002076!5.34e-14!43;CL:0000223!1.69e-12!59;CL:0000220!1.32e-10!246;CL:0002321!1.67e-10!248;CL:0002368!2.72e-08!13;CL:0002139!8.75e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.98e-11;42!CL:0002368;2.31e-08;13!CL:0000076;3.57e-07;63!CL:0002139;7.79e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.02e-45,253;CL:0002076,5.04e-15,42;CL:0000076,8.92e-14,63;CL:0000223,2.34e-13,58;CL:0002321,8.47e-10,250;CL:0002368,2.26e-08,13;CL:0002139,7.58e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000223;1.90e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.55e-14!106;DOID:0050687!6.72e-12!143;DOID:193!6.93e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:193;6.14e-07;29!DOID:1749;9.32e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.32e-15,106;DOID:0050687,5.82e-12,143;DOID:193,5.99e-07,29;DOID:1749,9.41e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.99e-16!169;UBERON:0000925!3.99e-16!169;UBERON:0006595!3.99e-16!169;UBERON:0000466!6.44e-15!126;UBERON:0000464!2.57e-14!104;UBERON:0004111!3.11e-12!241;UBERON:0001048!5.83e-12!168;UBERON:0000477!1.44e-11!286;UBERON:0001007!1.53e-11!155;UBERON:0001555!1.53e-11!155;UBERON:0007026!1.53e-11!155;UBERON:0000475!2.92e-11!365;UBERON:0003104!3.86e-11!238;UBERON:0009142!3.86e-11!238;UBERON:0000481!4.47e-11!347;UBERON:0001004!6.03e-11!72;UBERON:0000468!6.54e-11!659;UBERON:0000077!8.81e-11!130;UBERON:0009569!1.03e-10!113;UBERON:0002553!1.42e-10!70;UBERON:0000064!3.30e-10!219;UBERON:0003914!5.88e-09!118;UBERON:0002100!8.65e-09!216;UBERON:0001041!8.73e-09!98;UBERON:0000467!1.09e-08!625;UBERON:0000480!1.22e-08!626;UBERON:0004921!2.02e-08!129;UBERON:0004185!2.02e-08!129;UBERON:0003886!2.18e-08!63;UBERON:0000119!2.35e-08!312;UBERON:0005177!4.74e-08!107;UBERON:0000483!5.08e-08!309;UBERON:0000065!1.90e-07!53;UBERON:0003100!4.80e-07!41;UBERON:0000915!4.96e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;3.00e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.82e-15,160;UBERON:0000925,5.82e-15,160;UBERON:0006595,5.82e-15,160;UBERON:0004111,6.02e-12,240;UBERON:0009569,3.66e-11,112;UBERON:0001007,9.98e-11,145;UBERON:0001555,9.98e-11,145;UBERON:0007026,9.98e-11,145;UBERON:0001048,1.37e-10,160;UBERON:0001004,2.35e-10,74;UBERON:0002553,1.84e-09,61;UBERON:0005177,3.60e-09,101;UBERON:0003914,4.01e-09,117;UBERON:0002100,7.99e-09,199;UBERON:0001041,1.47e-08,87;UBERON:0004921,6.75e-08,118;UBERON:0003886,2.80e-07,54;UBERON:0000065,2.97e-07,54;UBERON:0001008,3.70e-07,48;UBERON:0003100,3.71e-07,41;UBERON:0000915,3.97e-07,52;UBERON:0000119,4.18e-07,309;UBERON:0006554,5.81e-07,47;UBERON:0000483,8.51e-07,306;UBERON:0003133,9.83e-07,48 | |||
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| ||
|short_description=p1@PPP1R13L | |||
}} | }} |
Latest revision as of 17:03, 18 September 2015
Short description: | p1@PPP1R13L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPP1R13L_5end |
Coexpression cluster: | C3802_Sebocyte_Urothelial_Corneal_Mammary_large_salivary_Bronchial |
Association with transcript: | 0bp_to_ENST00000360957, NM_006663, uc002pbn.2_5end |
EntrezGene: | PPP1R13L |
HGNC: | 18838 |
UniProt: | Q8WUF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.02e-45 | 253 |
endo-epithelial cell | 5.04e-15 | 42 |
squamous epithelial cell | 8.92e-14 | 63 |
endodermal cell | 2.34e-13 | 58 |
embryonic cell | 8.47e-10 | 250 |
respiratory epithelial cell | 2.26e-08 | 13 |
endothelial cell of vascular tree | 7.58e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.82e-15 | 160 |
endoderm | 5.82e-15 | 160 |
presumptive endoderm | 5.82e-15 | 160 |
anatomical conduit | 6.02e-12 | 240 |
subdivision of trunk | 3.66e-11 | 112 |
digestive system | 9.98e-11 | 145 |
digestive tract | 9.98e-11 | 145 |
primitive gut | 9.98e-11 | 145 |
primordium | 1.37e-10 | 160 |
respiratory system | 2.35e-10 | 74 |
anatomical cavity | 1.84e-09 | 61 |
trunk region element | 3.60e-09 | 101 |
epithelial tube | 4.01e-09 | 117 |
trunk | 7.99e-09 | 199 |
foregut | 1.47e-08 | 87 |
subdivision of digestive tract | 6.75e-08 | 118 |
body cavity precursor | 2.80e-07 | 54 |
respiratory tract | 2.97e-07 | 54 |
renal system | 3.70e-07 | 48 |
female organism | 3.71e-07 | 41 |
thoracic segment of trunk | 3.97e-07 | 52 |
cell layer | 4.18e-07 | 309 |
urinary system structure | 5.81e-07 | 47 |
epithelium | 8.51e-07 | 306 |
reproductive organ | 9.83e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.32e-15 | 106 |
cell type cancer | 5.82e-12 | 143 |
reproductive organ cancer | 5.99e-07 | 29 |
squamous cell carcinoma | 9.41e-07 | 14 |