FFCP PHASE1:Hg19::chr5:72744562..72744573,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:72744562..72744573,- to FFCP PHASE1:Hg19::chr5:72744562..72744573,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2297 | |EntrezGene=2297 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3802 | |HGNC=3802 | ||
|TSSclassifier=strong | |||
|UniProt=Q16676 | |UniProt=Q16676 | ||
|association_with_transcript=-210bp_to_ENST00000328926,NM_004472,uc003kcp.2_5end | |||
|cluster_id=chr5:72744562..72744573,- | |||
|coexpression_cluster_id=C2827 | |||
|description=CAGE_peak_3_at_FOXD1_5end | |||
|id=chr5:72744562..72744573,- | |||
|ontology_enrichment_celltype=CL:0000055!9.28e-36!180;CL:0000057!1.47e-19!75;CL:0000548!1.87e-13!679;CL:0000004!1.87e-13!679;CL:0000255!1.87e-13!679;CL:0000183!7.31e-13!59;CL:0000012!8.32e-13!682;CL:0000192!2.37e-11!42;CL:0000514!2.37e-11!42;CL:0000680!2.69e-11!57;CL:0000056!2.69e-11!57;CL:0000355!2.69e-11!57;CL:0000187!3.00e-11!54;CL:0000359!3.53e-11!32;CL:0002620!3.71e-11!23;CL:0000220!4.90e-11!246;CL:0002321!9.49e-11!248;CL:0000144!3.87e-09!625;CL:0000393!1.02e-08!60;CL:0000211!1.02e-08!60;CL:0002371!3.40e-08!591;CL:0000035!4.30e-07!20;CL:0000003!9.93e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.94e-12;23!CL:0000057;1.07e-09;73!CL:0000359;1.07e-09;32!CL:0002539;2.80e-07;10!CL:0000062;7.56e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.72e-21,76;CL:0002620,1.27e-12,23;CL:0000359,2.20e-10,32;CL:0000192,1.51e-08,43;CL:0000514,1.51e-08,43;CL:0000187,3.97e-08,55;CL:0000062,4.30e-08,11;CL:0000375,4.30e-08,11;CL:0000335,4.30e-08,11;CL:0002539,1.12e-07,10;CL:0000680,1.15e-07,58;CL:0000056,1.15e-07,58;CL:0000355,1.15e-07,58;CL:0002321,6.85e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000335;3.65e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.01e-21!365;UBERON:0000914!8.10e-15!83;UBERON:0002329!8.10e-15!83;UBERON:0003077!8.10e-15!83;UBERON:0003059!8.10e-15!83;UBERON:0007282!8.10e-15!83;UBERON:0009618!8.10e-15!83;UBERON:0007285!8.10e-15!83;UBERON:0002100!5.40e-14!216;UBERON:0002199!1.46e-13!45;UBERON:0002416!1.46e-13!45;UBERON:0003102!1.61e-13!95;UBERON:0002097!3.86e-13!40;UBERON:0005256!5.31e-13!143;UBERON:0004290!4.04e-12!70;UBERON:0000486!8.07e-12!82;UBERON:0001134!2.92e-09!61;UBERON:0002036!2.92e-09!61;UBERON:0003082!2.92e-09!61;UBERON:0003104!8.58e-09!238;UBERON:0009142!8.58e-09!238;UBERON:0002385!1.20e-08!63;UBERON:0001015!1.20e-08!63;UBERON:0000383!1.20e-08!63;UBERON:0000481!5.09e-08!347;UBERON:0005085!7.12e-07!29;UBERON:0001444!9.19e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.63e-10;41!UBERON:0002199;4.37e-09;46!UBERON:0002416;4.37e-09;46!UBERON:0003102;2.09e-08;50!UBERON:0010371;1.26e-07;31!UBERON:0004237;2.80e-07;10!UBERON:0004695;2.80e-07;10!UBERON:0002111;2.80e-07;10!UBERON:0004178;2.80e-07;10!UBERON:0001434;9.27e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,7.06e-14,46;UBERON:0002416,7.06e-14,46;UBERON:0002097,1.39e-13,41;UBERON:0007503,6.97e-11,78;UBERON:0003102,9.06e-10,99;UBERON:0007524,2.73e-09,73;UBERON:0002329,3.30e-09,71;UBERON:0003059,3.30e-09,71;UBERON:0007282,3.30e-09,71;UBERON:0004290,3.30e-09,71;UBERON:0009618,3.30e-09,71;UBERON:0000486,4.08e-09,83;UBERON:0003077,6.72e-09,72;UBERON:0007285,6.72e-09,72;UBERON:0004237,1.12e-07,10;UBERON:0004695,1.12e-07,10;UBERON:0002111,1.12e-07,10;UBERON:0004178,1.12e-07,10;UBERON:0001637,5.38e-07,42;UBERON:0003509,5.38e-07,42;UBERON:0004572,5.38e-07,42 | |||
|phase1_expression=1.81678379270557,1.2846031433459,2.39622486963151,2.00146596706261,1.34088328328186,0.872338524100369,5.06599756336621,1.89515962028049,0,1.47440361900905,0,0.655324116390517,2.90143676051299,1.36142988256051,0.662794751455832,2.6893005858071,4.82155622419182,4.38186054232424,2.43966399395253,4.062994916534,6.5280221198161,5.01527554364941,0.572471974262113,0.821246550437305,0.376627918784408,0,0,0,0,0,0,0,2.10844143144775,1.47901604066715,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,2.1686349143074,1.00267582127178,2.17269778441236,1.5905718941022,1.45990461090791,2.17430079477356,4.21285855178871,3.24988707064566,0.0654895377488563,1.09288586487763,0.741568885568859,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,2.40597972162702,2.38336525463794,1.43418310374407,1.77334191099179,1.68203280042692,6.4049397437823,5.42668606517752,0,0.404132016209064,0.490385709340376,10.2923050798553,9.21881479167998,1.40592859100278,2.18512053781224,1.1409436430889,0.597794722207204,3.40560046066918,1.94247533241758,2.10676210053373,1.42907919878425,3.31652656741774,1.65321249881225,3.56400857184616,3.70900393917835,0,0.718618141816238,2.02003336744879,1.87677779807946,0.831192346452549,5.26773145057006,6.43624371177941,2.70428506031874,1.36118619792025,5.74046834204358,7.04739383101272,2.33125091275518,4.50136644126603,4.63736381572975,2.57640540045629,3.90845398296339,3.88185564154912,8.86676746966907,5.04867548488229,4.78659472939957,1.77810662500693,6.39017266529906,7.35490317061774,4.23901480776219,1.54608682530637,1.36373060295417,1.14721838155602,0.121973706129595,0,0.348581828608555,0.10366105501537,0,0,7.8224766164908,12.2215778256648,4.14404764057442,0.928735856063958,1.44375896333917,0.473227200159376,0.674338760312407,0.482022059766964,0.992645754591546,0.217879444092406,0,0.269662616320329,0.392442930250692,0,0,5.60967095213783,0,0,0,0,0,0,0.245976877086227,1.3725424823882,2.08525542276389,3.37205259772859,3.11639814476056,0.462942225792648,1.95484983186195,0,1.44331342025273,1.04337364477569,2.23076519048061,0,0,0,0,0,0,0,0,0,3.35964256397719,2.97727704209012,1.79117045405697,2.3250715081117,2.68367875415648,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,7.28852048244845,8.7192013766656,11.0740811589635,0.775630294546667,0,1.690605505112,2.39344304926383,1.04007436911366,1.80045161983499,4.25547396069835,1.8649552531127,0.57191197463259,0,0,0.325736184293735,0.355391948742546,0,1.20575750823834,4.35766729300147,1.09970290300263,0,0,0,3.35474797688216,5.7430967917057,1.42636905040718,1.30303176000821,0.205476322550383,0.895304816199478,0,0,0.215627574859517,0.256686072559497,0,0,0,0,0.637938751653163,0,0,0,1.8403723757871,2.00068208423871,1.89885516589815,1.87173775377726,1.78428988797162,0.630809660135739,1.28855556491985,2.40756879782175,2.27407504055985,4.1389228517002,5.97803038681893,8.84972009000175,0.868836144680828,30.7407817216503,37.0594897715724,0,0,0,0.303127571446259,1.66435439510497,0.604780586659361,3.2254015016441,1.99500565274481,2.80660094433074,3.20347873139252,4.09365799253363,2.89537058058494,1.48418066444991,2.31314540703983,0.710246901252508,1.39616165223476,2.07701771673448,1.16210378459959,0.483437798366489,3.20810352485256,0.276242966807689,0,0.546273504020151,0.786746489756545,0.902399225814824,1.15523005656622,3.92174884588428,1.46139224653261,0.73886140225013,2.27466768141793,0,2.59099099322567,6.16909010761157,6.23176806350862,4.51520796469368,0.764628819135115,0,3.58199607555485,0,0,3.07740150139667,1.64007322849853,3.57916234130733,0.103041011647722,3.66277859273374,2.55779449753823,1.14853107599234,1.30012049207304,0,4.44685304143761,0.462145851343933,1.68854042198743,1.10269257987624,0.644521469209642,0.435050081742686,1.02271952899321,4.18450567539666,0.495854746082934,0,0.127612712494584,0.10115778085555,11.1562931831349,2.83331112147576,6.2733354314454,1.84820148105653,1.59691809095107,4.34966496037536,0.74129687641568,0.572499546967965,6.32669227911434,2.21465597303108,0.953150969619124,3.83846686967001,1.28381696410176,1.59101623962968,3.13979456079692,0.179872457583315,0.274537029736055,0.235624804691373,3.841467149893,1.58510321173008,3.79132610615083,2.92580243453754,0.974853958525138,5.28250733783777,0.682499557039929,0.565621727814851,0,2.75682671773062,0.66343897524122,1.75380354101505,2.31510213706675,0.655894752046633,4.46402829317949,5.26699946769575,4.50712964051586,0.573645408816206,1.3754865741837,3.21003946333125,0.354761064070598,1.05553817648832,0,1.89736586882858,0.349934720244983,0.962221127255121,0,2.17781969722645,0,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0.962479855263359,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0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| ||
|short_description=p3@FOXD1 | |||
}} | }} |
Latest revision as of 16:02, 18 September 2015
Short description: | p3@FOXD1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FOXD1_5end |
Coexpression cluster: | C2827_Pericytes_Osteoblast_Smooth_astrocytoma_Fibroblast_transitionalcell_alveolar |
Association with transcript: | -210bp_to_ENST00000328926, NM_004472, uc003kcp.2_5end |
EntrezGene: | FOXD1 |
HGNC: | 3802 |
UniProt: | Q16676 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.72e-21 | 76 |
skin fibroblast | 1.27e-12 | 23 |
vascular associated smooth muscle cell | 2.20e-10 | 32 |
smooth muscle cell | 1.51e-08 | 43 |
smooth muscle myoblast | 1.51e-08 | 43 |
muscle cell | 3.97e-08 | 55 |
osteoblast | 4.30e-08 | 11 |
osteoprogenitor cell | 4.30e-08 | 11 |
mesenchyme condensation cell | 4.30e-08 | 11 |
aortic smooth muscle cell | 1.12e-07 | 10 |
muscle precursor cell | 1.15e-07 | 58 |
myoblast | 1.15e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.15e-07 | 58 |
embryonic cell | 6.85e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
integument | 7.06e-14 | 46 |
integumental system | 7.06e-14 | 46 |
skin of body | 1.39e-13 | 41 |
epithelial vesicle | 6.97e-11 | 78 |
surface structure | 9.06e-10 | 99 |
dense mesenchyme tissue | 2.73e-09 | 73 |
somite | 3.30e-09 | 71 |
presomitic mesoderm | 3.30e-09 | 71 |
presumptive segmental plate | 3.30e-09 | 71 |
dermomyotome | 3.30e-09 | 71 |
trunk paraxial mesoderm | 3.30e-09 | 71 |
multilaminar epithelium | 4.08e-09 | 83 |
paraxial mesoderm | 6.72e-09 | 72 |
presumptive paraxial mesoderm | 6.72e-09 | 72 |
blood vessel smooth muscle | 1.12e-07 | 10 |
arterial system smooth muscle | 1.12e-07 | 10 |
artery smooth muscle tissue | 1.12e-07 | 10 |
aorta smooth muscle tissue | 1.12e-07 | 10 |
artery | 5.38e-07 | 42 |
arterial blood vessel | 5.38e-07 | 42 |
arterial system | 5.38e-07 | 42 |