FFCP PHASE1:Hg19::chr12:49579471..49579510,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:49579471..49579510,-
|short_description=p8@TUBA1A
|description=CAGE_peak_8_at_TUBA1A_5end
|association_with_transcript=263bp_to_AF141348_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7846 | |EntrezGene=7846 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=20766 | |HGNC=20766 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQM3 | |UniProt=Q9UQM3 | ||
|association_with_transcript=263bp_to_AF141348_5end | |||
|cluster_id=chr12:49579471..49579510,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_8_at_TUBA1A_5end | |||
|id=chr12:49579471..49579510,- | |||
|ontology_enrichment_celltype=CL:0000055!3.60e-13!180;CL:0000393!3.31e-11!60;CL:0000211!3.31e-11!60;CL:0000183!5.36e-10!59;CL:0000680!8.96e-10!57;CL:0000056!8.96e-10!57;CL:0000355!8.96e-10!57;CL:0000187!3.58e-09!54;CL:0000222!1.86e-08!119;CL:0000192!1.04e-07!42;CL:0000514!1.04e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002594;2.43e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.17e-08,61;CL:0000211,4.17e-08,61;CL:0002594,7.56e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!5.68e-17!86;UBERON:0001017!8.94e-17!82;UBERON:0000073!1.16e-16!94;UBERON:0001016!1.16e-16!94;UBERON:0000955!3.18e-13!69;UBERON:0006238!3.18e-13!69;UBERON:0001049!4.57e-13!57;UBERON:0005068!4.57e-13!57;UBERON:0006241!4.57e-13!57;UBERON:0007135!4.57e-13!57;UBERON:0002616!1.49e-12!59;UBERON:0000483!6.91e-12!309;UBERON:0000033!8.18e-12!123;UBERON:0000119!9.75e-12!312;UBERON:0000153!1.73e-11!129;UBERON:0007811!1.73e-11!129;UBERON:0003075!3.57e-11!86;UBERON:0007284!3.57e-11!86;UBERON:0000475!4.81e-11!365;UBERON:0000914!5.16e-11!83;UBERON:0002329!5.16e-11!83;UBERON:0003077!5.16e-11!83;UBERON:0003059!5.16e-11!83;UBERON:0007282!5.16e-11!83;UBERON:0009618!5.16e-11!83;UBERON:0007285!5.16e-11!83;UBERON:0004121!6.25e-11!169;UBERON:0002346!6.30e-11!90;UBERON:0000924!7.26e-11!173;UBERON:0006601!7.26e-11!173;UBERON:0000025!8.09e-10!194;UBERON:0000467!3.02e-09!625;UBERON:0000468!3.88e-09!659;UBERON:0002780!4.29e-09!41;UBERON:0001890!4.29e-09!41;UBERON:0006240!4.29e-09!41;UBERON:0000480!4.53e-09!626;UBERON:0001134!8.04e-09!61;UBERON:0002036!8.04e-09!61;UBERON:0003082!8.04e-09!61;UBERON:0004290!8.32e-09!70;UBERON:0002385!9.45e-09!63;UBERON:0001015!9.45e-09!63;UBERON:0000383!9.45e-09!63;UBERON:0002049!1.18e-08!79;UBERON:0007798!1.18e-08!79;UBERON:0000486!1.48e-08!82;UBERON:0003080!1.56e-08!42;UBERON:0000922!2.55e-08!612;UBERON:0004111!3.47e-08!241;UBERON:0002020!7.43e-08!34;UBERON:0003528!7.43e-08!34;UBERON:0002050!9.81e-08!605;UBERON:0005423!9.81e-08!605;UBERON:0003056!1.11e-07!61;UBERON:0000923!1.58e-07!604;UBERON:0005291!1.58e-07!604;UBERON:0006598!1.58e-07!604;UBERON:0002532!1.58e-07!604;UBERON:0001893!1.63e-07!34;UBERON:0000477!1.97e-07!286;UBERON:0002791!2.40e-07!33;UBERON:0005256!3.32e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;2.43e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.18e-13,81;UBERON:0001016,4.87e-12,89;UBERON:0004121,3.36e-10,171;UBERON:0000924,3.36e-10,171;UBERON:0006601,3.36e-10,171;UBERON:0003075,9.33e-10,82;UBERON:0007284,9.33e-10,82;UBERON:0010371,4.08e-09,104;UBERON:0001049,4.97e-09,56;UBERON:0005068,4.97e-09,56;UBERON:0006241,4.97e-09,56;UBERON:0007135,4.97e-09,56;UBERON:0002346,5.71e-09,86;UBERON:0003076,2.36e-08,15;UBERON:0003057,2.36e-08,15;UBERON:0000955,6.18e-08,68;UBERON:0006238,6.18e-08,68;UBERON:0010314,7.04e-08,132;UBERON:0001310,7.56e-08,4;UBERON:0002050,8.41e-08,564;UBERON:0000483,1.48e-07,306;UBERON:0000923,1.66e-07,560;UBERON:0010316,1.66e-07,560;UBERON:0005291,1.66e-07,560;UBERON:0006598,1.66e-07,560;UBERON:0010317,1.66e-07,560;UBERON:0002532,1.66e-07,560;UBERON:0000119,2.43e-07,309;UBERON:0005423,6.87e-07,581;UBERON:0000025,8.92e-07,192 | |||
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| ||
|short_description=p8@TUBA1A | |||
}} | }} |
Latest revision as of 15:48, 18 September 2015
Short description: | p8@TUBA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TUBA1A_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 263bp_to_AF141348_5end |
EntrezGene: | TUBA1A |
HGNC: | 20766 |
UniProt: | Q9UQM3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.17e-08 | 61 |
electrically active cell | 4.17e-08 | 61 |
smooth muscle cell of the umbilical artery | 7.56e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.18e-13 | 81 |
nervous system | 4.87e-12 | 89 |
ectoderm-derived structure | 3.36e-10 | 171 |
ectoderm | 3.36e-10 | 171 |
presumptive ectoderm | 3.36e-10 | 171 |
neural plate | 9.33e-10 | 82 |
presumptive neural plate | 9.33e-10 | 82 |
ecto-epithelium | 4.08e-09 | 104 |
neural tube | 4.97e-09 | 56 |
neural rod | 4.97e-09 | 56 |
future spinal cord | 4.97e-09 | 56 |
neural keel | 4.97e-09 | 56 |
neurectoderm | 5.71e-09 | 86 |
posterior neural tube | 2.36e-08 | 15 |
chordal neural plate | 2.36e-08 | 15 |
brain | 6.18e-08 | 68 |
future brain | 6.18e-08 | 68 |
structure with developmental contribution from neural crest | 7.04e-08 | 132 |
umbilical artery | 7.56e-08 | 4 |
embryonic structure | 8.41e-08 | 564 |
epithelium | 1.48e-07 | 306 |
germ layer | 1.66e-07 | 560 |
germ layer / neural crest | 1.66e-07 | 560 |
embryonic tissue | 1.66e-07 | 560 |
presumptive structure | 1.66e-07 | 560 |
germ layer / neural crest derived structure | 1.66e-07 | 560 |
epiblast (generic) | 1.66e-07 | 560 |
cell layer | 2.43e-07 | 309 |
developing anatomical structure | 6.87e-07 | 581 |
tube | 8.92e-07 | 192 |