FFCP PHASE1:Hg19::chr17:8152590..8152635,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5198 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8863 | |||
|TSSclassifier=strong | |||
|UniProt=O15067,F5GWT9,A8K9T9,Q6P4B4 | |||
|association_with_transcript=0bp_to_ENST00000314666,ENST00000545834,NM_012393,uc002gkr.2,uc010vuv.1_5end | |||
|cluster_id=chr17:8152590..8152635,+ | |||
|description=CAGE_peak_1_at_PFAS_5end | |||
|id=chr17:8152590..8152635,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.35e-11!254;CL:0002321!3.01e-09!248;CL:0000055!8.71e-09!180;CL:0000220!1.25e-08!246;CL:0000333!8.23e-08!41;CL:0000133!1.27e-07!59;CL:1000449!5.16e-07!16;CL:0002319!6.28e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:1000449;4.53e-07;15!CL:0002319;7.18e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.87e-11,253;CL:0002321,1.47e-09,250;CL:0000333,8.23e-08,41;CL:0000133,1.27e-07,59;CL:1000449,4.75e-07,15;CL:0002319,6.28e-07,25;CL:0000115,7.63e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.53e-17!235;DOID:14566!2.48e-16!239;DOID:2531!1.89e-12!51;DOID:0060083!1.89e-12!51;DOID:1240!3.20e-10!39;DOID:8692!5.16e-08!31;DOID:0050687!1.86e-07!143;DOID:0050686!9.58e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.80e-08;39!DOID:2531;2.57e-08;51!DOID:0060083;2.57e-08;51!DOID:8692;7.12e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.53e-17,235;DOID:14566,2.48e-16,239;DOID:2531,1.89e-12,51;DOID:0060083,1.89e-12,51;DOID:1240,3.20e-10,39;DOID:8692,5.16e-08,31;DOID:0050687,1.86e-07,143;DOID:0050686,9.58e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000119!1.46e-07!312;UBERON:0004211!5.16e-07!16;UBERON:0001285!5.16e-07!16;UBERON:0007684!5.16e-07!16;UBERON:0003220!5.16e-07!16;UBERON:0004208!5.16e-07!16;UBERON:0000483!6.26e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.53e-07;15!UBERON:0004819;4.53e-07;15!UBERON:0001285;4.53e-07;15!UBERON:0007684;4.53e-07;15!UBERON:0002113;4.89e-07;24!UBERON:0011143;4.89e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,4.05e-07,309;UBERON:0004211,4.75e-07,15;UBERON:0009773,4.75e-07,15;UBERON:0001231,4.75e-07,15;UBERON:0001285,4.75e-07,15;UBERON:0007684,4.75e-07,15;UBERON:0004208,4.75e-07,15 | |||
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| |||
|short_description=p1@PFAS | |||
}} |
Latest revision as of 15:19, 18 September 2015
Short description: | p1@PFAS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PFAS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000314666, ENST00000545834, NM_012393, uc002gkr.2, uc010vuv.1_5end |
EntrezGene: | PFAS |
HGNC: | 8863 |
UniProt: | O15067F5GWT9A8K9T9Q6P4B4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.87e-11 | 253 |
embryonic cell | 1.47e-09 | 250 |
migratory neural crest cell | 8.23e-08 | 41 |
neurectodermal cell | 1.27e-07 | 59 |
epithelial cell of nephron | 4.75e-07 | 15 |
neural cell | 6.28e-07 | 25 |
endothelial cell | 7.63e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cell layer | 4.05e-07 | 309 |
nephron epithelium | 4.75e-07 | 15 |
renal tubule | 4.75e-07 | 15 |
nephron tubule | 4.75e-07 | 15 |
nephron | 4.75e-07 | 15 |
uriniferous tubule | 4.75e-07 | 15 |
nephrogenic mesenchyme | 4.75e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.53e-17 | 235 |
disease of cellular proliferation | 2.48e-16 | 239 |
hematologic cancer | 1.89e-12 | 51 |
immune system cancer | 1.89e-12 | 51 |
leukemia | 3.20e-10 | 39 |
myeloid leukemia | 5.16e-08 | 31 |
cell type cancer | 1.86e-07 | 143 |
organ system cancer | 9.58e-07 | 137 |