FFCP PHASE1:Hg19::chr19:45411107..45411153,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=348 | |EntrezGene=348 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=613 | |HGNC=613 | ||
|TSSclassifier=strong | |||
|UniProt=Q6LBZ1 | |UniProt=Q6LBZ1 | ||
|association_with_transcript=-9bp_to_X00199_5end | |association_with_transcript=-9bp_to_X00199_5end | ||
|cluster_id=chr19:45411107..45411153,+ | |||
|coexpression_cluster_id=C848 | |coexpression_cluster_id=C848 | ||
|description=CAGE_peak_3_at_APOE_5end | |description=CAGE_peak_3_at_APOE_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000235;3.80e-12;6!CL:0002322;9.39e-10;5!CL:0000136;9.60e-10;13!CL:0000182;1.69e-08;12!CL:0000148;5.95e-08;10!CL:0002619;7.34e-07;3 | |ontology_enrichment_celltype_v019=CL:0000235;3.80e-12;6!CL:0002322;9.39e-10;5!CL:0000136;9.60e-10;13!CL:0000182;1.69e-08;12!CL:0000148;5.95e-08;10!CL:0002619;7.34e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,3.22e-12,6;CL:0002322,1.22e-09,5;CL:0000182,2.04e-08,12;CL:0000136,6.15e-08,15;CL:0000148,8.34e-08,10;CL:0000541,8.34e-08,10;CL:0002619,6.85e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.32e-07;11 | |ontology_enrichment_development_v019=UBERON:0004161;6.32e-07;11 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000125;8.70e-12;9!UBERON:0002308;8.70e-12;9!UBERON:0002420;1.52e-11;9!UBERON:0007245;1.52e-11;9!UBERON:0010009;1.52e-11;9!UBERON:0010011;1.52e-11;9!UBERON:0000454;1.52e-11;9!UBERON:0009663;3.49e-09;7!UBERON:0002107;7.39e-08;19!UBERON:0006925;7.39e-08;19!UBERON:0002791;1.23e-07;32!UBERON:0003528;1.32e-07;34!UBERON:0002020;1.32e-07;34!UBERON:0001017;4.76e-07;75 | |ontology_enrichment_uberon_v019=UBERON:0000125;8.70e-12;9!UBERON:0002308;8.70e-12;9!UBERON:0002420;1.52e-11;9!UBERON:0007245;1.52e-11;9!UBERON:0010009;1.52e-11;9!UBERON:0010011;1.52e-11;9!UBERON:0000454;1.52e-11;9!UBERON:0009663;3.49e-09;7!UBERON:0002107;7.39e-08;19!UBERON:0006925;7.39e-08;19!UBERON:0002791;1.23e-07;32!UBERON:0003528;1.32e-07;34!UBERON:0002020;1.32e-07;34!UBERON:0001017;4.76e-07;75 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.89e-13,81;UBERON:0001016,3.98e-12,89;UBERON:0000125,4.98e-12,9;UBERON:0002308,4.98e-12,9;UBERON:0001049,6.22e-12,56;UBERON:0005068,6.22e-12,56;UBERON:0006241,6.22e-12,56;UBERON:0007135,6.22e-12,56;UBERON:0002420,6.76e-12,9;UBERON:0007245,6.76e-12,9;UBERON:0010009,6.76e-12,9;UBERON:0010011,6.76e-12,9;UBERON:0000454,6.76e-12,9;UBERON:0000073,2.21e-10,53;UBERON:0002616,2.21e-10,53;UBERON:0000955,3.59e-10,68;UBERON:0006238,3.59e-10,68;UBERON:0007023,5.84e-10,114;UBERON:0003528,1.05e-09,34;UBERON:0002020,1.05e-09,34;UBERON:0009663,3.10e-09,7;UBERON:0011216,2.87e-08,223;UBERON:0002791,6.69e-08,32;UBERON:0002107,8.39e-08,19;UBERON:0006925,8.39e-08,19;UBERON:0008836,8.39e-08,19;UBERON:0002780,1.90e-07,41;UBERON:0001890,1.90e-07,41;UBERON:0003080,1.90e-07,41;UBERON:0006240,1.90e-07,41;UBERON:0001893,3.00e-07,34;UBERON:0002346,4.66e-07,86;UBERON:0003075,6.81e-07,82;UBERON:0007284,6.81e-07,82 | |||
|phase1_expression=0,17.1280419112787,0.140954404095971,1.0007329835313,4.02264984984559,0,2.53299878168311,3.15859936713415,22.723149653386,0,0,0,0.263766978228454,0.247532705920093,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,7.61312612415743,10.3645973126073,3.60605794687861,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,1.34140171940727,0,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0.916853528483988,0,0,0.649094787309367,0.696518949197069,3.58986493400936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,1.24484414159907,0,1.14423332179421,1.21085942115945,2.88087962239999,0,0.312160076830321,0.570471821544449,0.298897361103602,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,3.04934265323988,2.25300606146525,4.06678800043314,3.31715376049185,6.56034212276634,2.91981887260664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,25.3510069643662,35.3817798003945,20.6776467338491,0,2.21379189377604,0,0.548751427043128,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,3.69325509131096,2.57404691653161,10.5528125224997,0,0.16798212819886,0.425325291727159,0,0,0,0,0,0,0,0,0.253991577168676,0.381988425558278,1.17217447210047,0,1.43958489784653,2.70308752059526,2.00078502841405,0,0.87192013766656,0.07333828582095,0,7.15312891703765,0,0.26593811658487,0,0,0,0,0.142977993658148,5.96883765930587,0,0.65147236858747,0,0,0.301439377059586,0,0,51.0819878693,16.5744840172602,42.1667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,5.50187573165645,0,0,0,0,0,0.300946099727719,0,3.10419213877515,0,0.184369168541703,0,2.34961388955289,7.89229874764969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,2.40607764363942,0.276242966807689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0,0,0.328014645699706,0,4.12164046590889,0,0,0,0.650060246036521,0,0,0.462145851343933,0.614014698904518,0.137836572484531,0.322260734604821,0.290033387828457,0.170453254832202,0,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,1.86079184679834,0.316379424718726,0.762520775695299,0,2.1396949401696,0,0,0.179872457583315,0.823611089208164,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0.578775534266688,1.31178950409327,0,0.92947049429925,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,3.57746442951761,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,2.24330549367694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.15436994738562,0.540911356951966,0.33307196799782,1.4098700508785,0,0.146508179271894,0.121360521749513,0,0,0,0,0,1.9882952955326,1.96937182974718,0,0,0.211125408127993,0,0.828851746593443,0,0.102268682502155,0,0,0,0,0,0,0,0,2.90799823828566,0.74214478529481,0,0,0,0,0,0.508507300585533,0,0.344743373241465,0,0.347249989866585,2.65722415744152,3.61789315876224,1.52581736317083,0.552896299656123,3.84211904639612,3.07139556015562,0,0,0.153900517007594,0,0.23056390438806,0.0897576444097721,0.869178975376065,0,0.549585560411174,1.5991043280559,0,0,1.32969345520125,0,0,0,0,0,0,0,0.706765357169704,0,0,0.0884575645033392,0,0,0,0,0.67401132980677,0.802577647298789,6.5594044803095,0,0,0,0.394584402849391,1.20990716048664,1.83643656978294,0.31593289814244,0,0,0,0,0,0,2.56148591426813,0,0.173559738335131,0,0,1.92199335066233,0,0,0,0,0,0,0.677942222341597,0,0,0.443175571691151,0,0,0.426905989478705,0,0,0.343609788497747,9.09453488668412,0,0,0,0,0,0,0,4.20294202096853,2.46429682005587,0,0,0,0,0.229160424011684,0,1.59743200399193,0,0,0.0671834724867263,0,1.16495949527454,1.81201319306614,2.22522817629149,2.2243169471881,0.196854963029498,0,1.59045937961861,0.953423842781029,3.53656926623042,4.95141971750042,5.40072439437941,0,0,0.485996453264197,0,1.26089131678717,0.367182116944987,0,0,0.191915197319445,1.42939065274673,0,0,0,0,0.326587360109409,0,0.492555124496034,0,0.113312091520126,4.83622371137672,31.8016533389331,1.93924434542326,2.77688463659649,0,0,0.533937062838473,0.157204305099666,2.89967338743037,1.48849806543585,0,0,0,1.08803560673895,1.2534494701135,0.919036730290385,2.62298104567844,0,0,1.22026264901963,0.500763722825999,1.72022758707021,1.44207766997908,0.372578417648301,0,0,0.758245587708239,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0.604923695052956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07220795687463,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0.345430341731199,0,0.829550616910385,0.194860308839388,0,0.490696182767533,0,1.47463745252232,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,4.08988022054707,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0.638535436228605,2.87162909937057,0.252071696221718,0.207471757392654,1.61475645631851,1.42769420259154,0,0,0.366857197043358,0,0,0,0.198916222116275,0.225630985047772,0,0.781514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| ||
|short_description=p3@APOE | |short_description=p3@APOE | ||
}} | }} |
Latest revision as of 14:43, 18 September 2015
Short description: | p3@APOE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APOE_5end |
Coexpression cluster: | C848_Monocytederived_Mesenchymal_Hepatocyte_Adipocyte_CD14_Cardiac_liver |
Association with transcript: | -9bp_to_X00199_5end |
EntrezGene: | APOE |
HGNC: | 613 |
UniProt: | Q6LBZ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 3.22e-12 | 6 |
embryonic stem cell | 1.22e-09 | 5 |
hepatocyte | 2.04e-08 | 12 |
fat cell | 6.15e-08 | 15 |
melanocyte | 8.34e-08 | 10 |
melanoblast | 8.34e-08 | 10 |
adult endothelial progenitor cell | 6.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.89e-13 | 81 |
nervous system | 3.98e-12 | 89 |
neural nucleus | 4.98e-12 | 9 |
nucleus of brain | 4.98e-12 | 9 |
neural tube | 6.22e-12 | 56 |
neural rod | 6.22e-12 | 56 |
future spinal cord | 6.22e-12 | 56 |
neural keel | 6.22e-12 | 56 |
basal ganglion | 6.76e-12 | 9 |
nuclear complex of neuraxis | 6.76e-12 | 9 |
aggregate regional part of brain | 6.76e-12 | 9 |
collection of basal ganglia | 6.76e-12 | 9 |
cerebral subcortex | 6.76e-12 | 9 |
regional part of nervous system | 2.21e-10 | 53 |
regional part of brain | 2.21e-10 | 53 |
brain | 3.59e-10 | 68 |
future brain | 3.59e-10 | 68 |
adult organism | 5.84e-10 | 114 |
brain grey matter | 1.05e-09 | 34 |
gray matter | 1.05e-09 | 34 |
telencephalic nucleus | 3.10e-09 | 7 |
organ system subdivision | 2.87e-08 | 223 |
regional part of telencephalon | 6.69e-08 | 32 |
liver | 8.39e-08 | 19 |
digestive gland | 8.39e-08 | 19 |
liver bud | 8.39e-08 | 19 |
regional part of forebrain | 1.90e-07 | 41 |
forebrain | 1.90e-07 | 41 |
anterior neural tube | 1.90e-07 | 41 |
future forebrain | 1.90e-07 | 41 |
telencephalon | 3.00e-07 | 34 |
neurectoderm | 4.66e-07 | 86 |
neural plate | 6.81e-07 | 82 |
presumptive neural plate | 6.81e-07 | 82 |