FFCP PHASE1:Hg19::chr3:48632784..48632795,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:48632784..48632795,- to FFCP PHASE1:Hg19::chr3:48632784..48632795,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1294 | |EntrezGene=1294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2214 | |HGNC=2214 | ||
|TSSclassifier=strong | |||
|UniProt=Q02388 | |UniProt=Q02388 | ||
|association_with_transcript=-84bp_to_ENST00000328333_5end | |||
|cluster_id=chr3:48632784..48632795,- | |||
|coexpression_cluster_id=C4334 | |||
|description=CAGE_peak_2_at_COL7A1_5end | |||
|id=chr3:48632784..48632795,- | |||
|ontology_enrichment_celltype=CL:0000066!1.15e-09!254;CL:0002076!1.20e-09!43;CL:0002077!2.64e-09!33;CL:0002159!1.77e-08!13;CL:0000221!5.95e-08!71;CL:0002368!1.39e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;9.68e-18;13!CL:0002076;1.04e-15;42!CL:0000622;8.73e-15;5!CL:0000154;2.87e-12;6!CL:0002159;8.94e-12;14!CL:0002251;6.61e-11;20!CL:0002577;1.46e-10;3!CL:0002328;4.69e-10;3!CL:0002621;4.76e-10;3!CL:0002623;6.97e-10;3!CL:0002202;2.02e-08;9!CL:0002632;2.02e-08;9!CL:0000244;2.56e-08;4!CL:0000731;2.56e-08;4!CL:0000240;3.69e-08;6!CL:0000311;3.69e-08;6!CL:0000079;3.69e-08;6!CL:0000237;3.69e-08;6!CL:0000150;4.56e-08;9!CL:0002575;6.25e-08;2!CL:0000362;8.81e-08;9!CL:0002549;1.31e-07;2!CL:0002327;4.25e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.45e-19,42;CL:0002368,9.95e-18,13;CL:0000622,1.10e-14,5;CL:0000223,1.26e-12,58;CL:0000154,3.46e-12,6;CL:0002159,5.27e-12,14;CL:0002251,7.39e-11,20;CL:0000066,1.32e-10,253;CL:0002577,1.51e-10,3;CL:0002328,3.51e-10,3;CL:0002621,4.64e-10,3;CL:0002623,9.91e-10,3;CL:0002202,1.93e-08,9;CL:0002632,1.93e-08,9;CL:0000244,2.60e-08,4;CL:0000731,2.60e-08,4;CL:0000240,3.42e-08,6;CL:0000311,3.42e-08,6;CL:0000079,3.42e-08,6;CL:0000237,3.42e-08,6;CL:0000036,3.42e-08,6;CL:0000357,3.42e-08,6;CL:0000114,3.42e-08,6;CL:0000150,5.15e-08,9;CL:0002575,6.27e-08,2;CL:0000362,7.58e-08,9;CL:0002549,1.36e-07,2;CL:0002327,5.06e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000357;3.69e-08;6!CL:0000114;3.69e-08;6!CL:0000223;1.41e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.58e-09!169;UBERON:0000925!1.58e-09!169;UBERON:0006595!1.58e-09!169;UBERON:0003102!1.78e-09!95;UBERON:0000062!2.21e-08!511;UBERON:0000165!9.36e-08!28;UBERON:0000930!9.36e-08!28;UBERON:0001004!1.56e-07!72;UBERON:0005631!4.19e-07!14;UBERON:0000158!4.19e-07!14;UBERON:0000166!4.46e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;3.36e-12;12!UBERON:0000365;1.01e-10;5!UBERON:0004815;4.69e-10;3!UBERON:0002031;4.69e-10;3!UBERON:0001949;4.76e-10;3!UBERON:0005910;6.29e-09;6!UBERON:0001003;8.90e-09;15!UBERON:0007376;8.90e-09;15!UBERON:0001987;5.26e-08;4!UBERON:0005629;1.31e-07;2!UBERON:0005358;1.31e-07;2!UBERON:0001886;1.31e-07;2!UBERON:0004086;1.31e-07;2!UBERON:0005282;1.31e-07;2!UBERON:0005281;1.31e-07;2!UBERON:0010371;1.35e-07;31!UBERON:0000165;3.56e-07;28!UBERON:0001911;4.25e-07;4!UBERON:0000161;6.14e-07;19!UBERON:0000166;6.14e-07;19!UBERON:0005911;7.07e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.31e-10,5;UBERON:0004815,3.51e-10,3;UBERON:0002031,3.51e-10,3;UBERON:0001949,4.64e-10,3;UBERON:0001003,7.61e-09,15;UBERON:0007376,7.61e-09,15;UBERON:0007383,7.61e-09,15;UBERON:0005910,7.80e-09,6;UBERON:0004119,1.45e-08,160;UBERON:0000925,1.45e-08,160;UBERON:0006595,1.45e-08,160;UBERON:0001987,5.40e-08,4;UBERON:0004340,5.40e-08,4;UBERON:0001004,1.03e-07,74;UBERON:0005629,1.36e-07,2;UBERON:0005358,1.36e-07,2;UBERON:0001886,1.36e-07,2;UBERON:0004086,1.36e-07,2;UBERON:0005282,1.36e-07,2;UBERON:0005281,1.36e-07,2;UBERON:0005631,2.69e-07,14;UBERON:0000158,2.69e-07,14;UBERON:0003102,4.77e-07,99;UBERON:0001911,5.06e-07,4;UBERON:0005333,5.06e-07,4;UBERON:0008425,5.06e-07,4;UBERON:0005311,5.06e-07,4;UBERON:0000165,7.26e-07,29;UBERON:0000930,7.26e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.31064823278103,1.84636884759917,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0,0,0,0.376627918784408,0,0,0,0,0,0,1.83884244895785,6.024118375565,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,1.5905718941022,3.40644409211845,0.0945348171640679,0.443458794925128,0.263504357079378,0.0654895377488563,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36094052142534,0,0,0,0.573673241497627,0,0,0,0,0.311211035399766,0,0,3.32986340818849,10.37116664064,0,0.624320153660641,0,0.149448680551801,0,0.323745888736263,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.741800787835671,0,0,0.168336113954066,0.125118519871964,0,0,0,1.50238058906597,0,0.358779271377724,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0,0.843881661206331,0,0,0,0,0,0.10075209822764,0,2.70565194428616,4.90943017063502,2.00763216772303,0,0,0.348581828608555,0.10366105501537,0,0,7.8224766164908,2.57296375277154,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0.441175890929576,0.435758888184812,0,0.404493924480493,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.42675371031213,2.24803506515239,1.60846355858609,4.25906847729236,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,1.51183915378974,1.98485136139341,1.43293636324557,1.16253575405585,2.30029607499127,0,0,0.414656231081544,0,0.25248486685276,0.063497894292169,0,0,0,0.308482478109971,0,0,1.00917975910825,0,1.39342743059805,0,3.57656445851882,0,0.26593811658487,0,0,0,0.266422179016099,0.857867961948885,0,0,0.325736184293735,1.42156779497018,0.791951872933429,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0.415941723061614,0.356857977594324,0.315404830067869,0,0,0,1.03473071292505,0,0,0,13.3144787074664,15.0983106476777,0,0,0,6.06255142892519,3.32870879020994,6.95497674658265,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0,1.03850885836724,0,0,0.802025881213139,0.0920809889358963,0.229628896329213,0.182091168006717,0,0.902399225814824,0.385076685522074,0.784349769176855,0,0.316654886678627,0,0,0,0,0.541892875087706,0.501689773854853,0.254876273045038,0.831076008928724,1.11937377361089,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,1.14853107599234,1.95018073810956,0,0,0,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0,2.31398881505369,2.69066094311149,14.8030746493718,1.2138933702666,0,0.31481234683064,2.0911118104818,0,0,0,0,0,5.58237554039501,0,0,0,0,0,0.78494864019923,0.539617372749944,0.274537029736055,0.471249609382746,0,0,0,1.46290121726877,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25088746543166,5.3624182042863,0,0,7.74909670808214,0,8.86860307073351,26.1884676235934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0,0.921482106297696,0,0,0.222617410045812,0,0,0,0,0,5.52250885511636,0,0.311039587661807,0,0.716084698702437,0,0,0,0,0,0.185536196323703,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0.31900115973192,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0.664653872707185,0.330991955875499,0.941798755221676,0,0,0,0,0,0.174118413160805,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0.164230914106418,0,0,0,0,0,0,0,0.240476460754601,0.213452994739353,0.999048047910651,0,0,0,0,0,0.707082103850386,0.543616824294456,0.523014231561666,0.101998217636322,0,0,0,0,0,0.788662062837943,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,1.34340638123612,0,0,0,0,0,0,0,0,1.19271615249795,0,0,0,0,0.13223260174269,0.855434189421647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,1.99968652739371,0,0,0,0,0.144921028610825,0.447764408660622,0,0,0,0,0,0,0,0.15543720058278,0.73927574994817,0.318593534327405,4.94783423379965,0.931577741257556,0.414706207840855,0,5.73919567992907,0,0,0,1.63663793282303,0.429642228169954,0,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70350199629091,0,0.19998739585493,0,0.172214979660816,0,0.920529751259204,0.279759015438889,3.73246356019784,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,1.47221577751538,0,0.733714394086716,0,0.381382095467167,0.690359926060101,0,0,0.80682027481408,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0.801711364730253,1.03608082081518,2.3900586793153,6.91259661814092,0,0.118332000730565,0.0852134047591577,0.423387050190929,0,0,0.955538938977433,0,0,0,0,0,0,0.485710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| ||
|short_description=p2@COL7A1 | |||
}} | }} |
Latest revision as of 14:38, 18 September 2015
Short description: | p2@COL7A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL7A1_5end |
Coexpression cluster: | C4334_Small_Placental_salivary_Pericytes_Urothelial_astrocytoma_Esophageal |
Association with transcript: | -84bp_to_ENST00000328333_5end |
EntrezGene: | COL7A1 |
HGNC: | 2214 |
UniProt: | Q02388 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
urothelium | 1.31e-10 | 5 |
lower respiratory tract epithelium | 3.51e-10 | 3 |
epithelium of bronchus | 3.51e-10 | 3 |
gingival epithelium | 4.64e-10 | 3 |
skin epidermis | 7.61e-09 | 15 |
outer epithelium | 7.61e-09 | 15 |
enveloping layer of ectoderm | 7.61e-09 | 15 |
transitional epithelium | 7.80e-09 | 6 |
endoderm-derived structure | 1.45e-08 | 160 |
endoderm | 1.45e-08 | 160 |
presumptive endoderm | 1.45e-08 | 160 |
placenta | 5.40e-08 | 4 |
allantois | 5.40e-08 | 4 |
respiratory system | 1.03e-07 | 74 |
vascular plexus | 1.36e-07 | 2 |
ventricle of nervous system | 1.36e-07 | 2 |
choroid plexus | 1.36e-07 | 2 |
brain ventricle | 1.36e-07 | 2 |
ventricular system of brain | 1.36e-07 | 2 |
ventricular system of central nervous system | 1.36e-07 | 2 |
extraembryonic membrane | 2.69e-07 | 14 |
membranous layer | 2.69e-07 | 14 |
surface structure | 4.77e-07 | 99 |
mammary gland | 5.06e-07 | 4 |
mammary bud | 5.06e-07 | 4 |
mammary ridge | 5.06e-07 | 4 |
mammary placode | 5.06e-07 | 4 |
mouth | 7.26e-07 | 29 |
stomodeum | 7.26e-07 | 29 |