FFCP PHASE1:Hg19::chr14:103523745..103523770,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:103523745..103523770,- to FFCP PHASE1:Hg19::chr14:103523745..103523770,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9578 | |EntrezGene=9578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1738 | |HGNC=1738 | ||
|TSSclassifier=strong | |||
|UniProt=Q86XZ8,Q9Y5S2 | |UniProt=Q86XZ8,Q9Y5S2 | ||
|association_with_transcript=-3bp_to_NM_006035,uc001ymi.1_5end | |||
|cluster_id=chr14:103523745..103523770,- | |||
|description=CAGE_peak_4_at_CDC42BPB_5end | |||
|id=chr14:103523745..103523770,- | |||
|ontology_enrichment_celltype=CL:0000220!9.26e-12!246;CL:0000222!2.58e-11!119;CL:0002321!2.81e-11!248;CL:0002078!2.19e-10!44;CL:0000115!1.75e-09!35;CL:0000055!5.78e-09!180;CL:0000057!2.15e-08!75;CL:0002139!2.29e-08!24;CL:0000071!1.25e-07!18;CL:0002546!1.25e-07!18;CL:0000066!2.30e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.57e-08;24!CL:0000115;3.58e-08;36!CL:0002078;1.18e-07;45!CL:0000071;1.29e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.61e-10,121;CL:0002078,1.62e-10,45;CL:0000115,1.24e-09,36;CL:0000057,4.75e-09,76;CL:0002321,1.65e-08,250;CL:0002139,2.87e-08,24;CL:0000071,8.70e-08,18;CL:0002546,8.70e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002546;1.29e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!6.14e-22!312;UBERON:0004111!1.16e-21!241;UBERON:0000483!1.77e-21!309;UBERON:0000477!5.73e-21!286;UBERON:0000467!2.00e-18!625;UBERON:0000480!3.31e-18!626;UBERON:0000475!2.24e-17!365;UBERON:0000025!6.68e-17!194;UBERON:0000468!7.00e-17!659;UBERON:0003914!1.10e-16!118;UBERON:0000481!1.53e-15!347;UBERON:0005256!1.07e-13!143;UBERON:0002049!3.26e-13!79;UBERON:0007798!3.26e-13!79;UBERON:0002100!5.44e-13!216;UBERON:0004872!8.82e-13!84;UBERON:0000055!4.17e-12!69;UBERON:0000923!6.50e-11!604;UBERON:0005291!6.50e-11!604;UBERON:0006598!6.50e-11!604;UBERON:0002532!6.50e-11!604;UBERON:0001981!9.35e-11!60;UBERON:0007500!9.35e-11!60;UBERON:0004537!9.35e-11!60;UBERON:0006965!9.35e-11!60;UBERON:0002050!1.25e-10!605;UBERON:0005423!1.25e-10!605;UBERON:0000490!2.22e-10!138;UBERON:0000062!3.29e-10!511;UBERON:0000922!8.56e-10!612;UBERON:0003104!1.35e-09!238;UBERON:0009142!1.35e-09!238;UBERON:0001009!3.81e-09!113;UBERON:0004535!1.35e-08!110;UBERON:0000466!5.47e-08!126;UBERON:0001986!1.25e-07!18;UBERON:0004638!1.25e-07!18;UBERON:0004852!1.25e-07!18;UBERON:0000914!1.96e-07!83;UBERON:0002329!1.96e-07!83;UBERON:0003077!1.96e-07!83;UBERON:0003059!1.96e-07!83;UBERON:0007282!1.96e-07!83;UBERON:0009618!1.96e-07!83;UBERON:0007285!1.96e-07!83;UBERON:0001637!3.29e-07!42;UBERON:0003509!3.29e-07!42;UBERON:0004572!3.29e-07!42;UBERON:0003102!3.36e-07!95;UBERON:0000487!7.63e-07!22;UBERON:0000486!7.69e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.29e-07;18!UBERON:0001986;1.29e-07;18!UBERON:0004852;1.29e-07;18!UBERON:0000487;7.29e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,9.89e-19,240;UBERON:0000119,1.32e-18,309;UBERON:0000483,3.68e-18,306;UBERON:0003914,5.77e-16,117;UBERON:0000025,5.23e-15,192;UBERON:0002049,4.53e-12,78;UBERON:0007798,4.53e-12,78;UBERON:0004872,1.02e-11,83;UBERON:0000055,4.37e-11,68;UBERON:0000490,6.22e-10,148;UBERON:0007500,6.37e-10,59;UBERON:0001981,6.37e-10,59;UBERON:0004537,6.37e-10,59;UBERON:0006965,6.37e-10,59;UBERON:0005256,1.18e-09,122;UBERON:0001009,6.22e-09,112;UBERON:0002100,1.22e-08,199;UBERON:0003104,1.91e-08,160;UBERON:0009142,1.91e-08,160;UBERON:0004535,2.32e-08,109;UBERON:0004638,8.70e-08,18;UBERON:0001986,8.70e-08,18;UBERON:0004852,8.70e-08,18;UBERON:0007503,1.51e-07,78;UBERON:0000487,5.22e-07,22;UBERON:0005423,8.78e-07,581 | |||
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| ||
|short_description=p4@CDC42BPB | |||
}} | }} |
Latest revision as of 14:31, 18 September 2015
Short description: | p4@CDC42BPB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDC42BPB_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_NM_006035, uc001ymi.1_5end |
EntrezGene: | CDC42BPB |
HGNC: | 1738 |
UniProt: | Q86XZ8Q9Y5S2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.61e-10 | 121 |
meso-epithelial cell | 1.62e-10 | 45 |
endothelial cell | 1.24e-09 | 36 |
fibroblast | 4.75e-09 | 76 |
embryonic cell | 1.65e-08 | 250 |
endothelial cell of vascular tree | 2.87e-08 | 24 |
blood vessel endothelial cell | 8.70e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.70e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 9.89e-19 | 240 |
cell layer | 1.32e-18 | 309 |
epithelium | 3.68e-18 | 306 |
epithelial tube | 5.77e-16 | 117 |
tube | 5.23e-15 | 192 |
vasculature | 4.53e-12 | 78 |
vascular system | 4.53e-12 | 78 |
splanchnic layer of lateral plate mesoderm | 1.02e-11 | 83 |
vessel | 4.37e-11 | 68 |
unilaminar epithelium | 6.22e-10 | 148 |
epithelial tube open at both ends | 6.37e-10 | 59 |
blood vessel | 6.37e-10 | 59 |
blood vasculature | 6.37e-10 | 59 |
vascular cord | 6.37e-10 | 59 |
trunk mesenchyme | 1.18e-09 | 122 |
circulatory system | 6.22e-09 | 112 |
trunk | 1.22e-08 | 199 |
mesenchyme | 1.91e-08 | 160 |
entire embryonic mesenchyme | 1.91e-08 | 160 |
cardiovascular system | 2.32e-08 | 109 |
blood vessel endothelium | 8.70e-08 | 18 |
endothelium | 8.70e-08 | 18 |
cardiovascular system endothelium | 8.70e-08 | 18 |
epithelial vesicle | 1.51e-07 | 78 |
simple squamous epithelium | 5.22e-07 | 22 |
developing anatomical structure | 8.78e-07 | 581 |