FFCP PHASE1:Hg19::chr14:103523745..103523770,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9578 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1738 | |||
|TSSclassifier=strong | |||
|UniProt=Q86XZ8,Q9Y5S2 | |||
|association_with_transcript=-3bp_to_NM_006035,uc001ymi.1_5end | |||
|cluster_id=chr14:103523745..103523770,- | |||
|description=CAGE_peak_4_at_CDC42BPB_5end | |||
|id=chr14:103523745..103523770,- | |||
|ontology_enrichment_celltype=CL:0000220!9.26e-12!246;CL:0000222!2.58e-11!119;CL:0002321!2.81e-11!248;CL:0002078!2.19e-10!44;CL:0000115!1.75e-09!35;CL:0000055!5.78e-09!180;CL:0000057!2.15e-08!75;CL:0002139!2.29e-08!24;CL:0000071!1.25e-07!18;CL:0002546!1.25e-07!18;CL:0000066!2.30e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.57e-08;24!CL:0000115;3.58e-08;36!CL:0002078;1.18e-07;45!CL:0000071;1.29e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.61e-10,121;CL:0002078,1.62e-10,45;CL:0000115,1.24e-09,36;CL:0000057,4.75e-09,76;CL:0002321,1.65e-08,250;CL:0002139,2.87e-08,24;CL:0000071,8.70e-08,18;CL:0002546,8.70e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002546;1.29e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!6.14e-22!312;UBERON:0004111!1.16e-21!241;UBERON:0000483!1.77e-21!309;UBERON:0000477!5.73e-21!286;UBERON:0000467!2.00e-18!625;UBERON:0000480!3.31e-18!626;UBERON:0000475!2.24e-17!365;UBERON:0000025!6.68e-17!194;UBERON:0000468!7.00e-17!659;UBERON:0003914!1.10e-16!118;UBERON:0000481!1.53e-15!347;UBERON:0005256!1.07e-13!143;UBERON:0002049!3.26e-13!79;UBERON:0007798!3.26e-13!79;UBERON:0002100!5.44e-13!216;UBERON:0004872!8.82e-13!84;UBERON:0000055!4.17e-12!69;UBERON:0000923!6.50e-11!604;UBERON:0005291!6.50e-11!604;UBERON:0006598!6.50e-11!604;UBERON:0002532!6.50e-11!604;UBERON:0001981!9.35e-11!60;UBERON:0007500!9.35e-11!60;UBERON:0004537!9.35e-11!60;UBERON:0006965!9.35e-11!60;UBERON:0002050!1.25e-10!605;UBERON:0005423!1.25e-10!605;UBERON:0000490!2.22e-10!138;UBERON:0000062!3.29e-10!511;UBERON:0000922!8.56e-10!612;UBERON:0003104!1.35e-09!238;UBERON:0009142!1.35e-09!238;UBERON:0001009!3.81e-09!113;UBERON:0004535!1.35e-08!110;UBERON:0000466!5.47e-08!126;UBERON:0001986!1.25e-07!18;UBERON:0004638!1.25e-07!18;UBERON:0004852!1.25e-07!18;UBERON:0000914!1.96e-07!83;UBERON:0002329!1.96e-07!83;UBERON:0003077!1.96e-07!83;UBERON:0003059!1.96e-07!83;UBERON:0007282!1.96e-07!83;UBERON:0009618!1.96e-07!83;UBERON:0007285!1.96e-07!83;UBERON:0001637!3.29e-07!42;UBERON:0003509!3.29e-07!42;UBERON:0004572!3.29e-07!42;UBERON:0003102!3.36e-07!95;UBERON:0000487!7.63e-07!22;UBERON:0000486!7.69e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.29e-07;18!UBERON:0001986;1.29e-07;18!UBERON:0004852;1.29e-07;18!UBERON:0000487;7.29e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,9.89e-19,240;UBERON:0000119,1.32e-18,309;UBERON:0000483,3.68e-18,306;UBERON:0003914,5.77e-16,117;UBERON:0000025,5.23e-15,192;UBERON:0002049,4.53e-12,78;UBERON:0007798,4.53e-12,78;UBERON:0004872,1.02e-11,83;UBERON:0000055,4.37e-11,68;UBERON:0000490,6.22e-10,148;UBERON:0007500,6.37e-10,59;UBERON:0001981,6.37e-10,59;UBERON:0004537,6.37e-10,59;UBERON:0006965,6.37e-10,59;UBERON:0005256,1.18e-09,122;UBERON:0001009,6.22e-09,112;UBERON:0002100,1.22e-08,199;UBERON:0003104,1.91e-08,160;UBERON:0009142,1.91e-08,160;UBERON:0004535,2.32e-08,109;UBERON:0004638,8.70e-08,18;UBERON:0001986,8.70e-08,18;UBERON:0004852,8.70e-08,18;UBERON:0007503,1.51e-07,78;UBERON:0000487,5.22e-07,22;UBERON:0005423,8.78e-07,581 | |||
|phase1_expression=0.908391896352783,3.21150785836475,2.53717927372748,1.0007329835313,3.12872766099101,1.74467704820074,0,0.631719873426831,1.56711376919903,2.45733936501509,2.09340350391728,1.74753097704138,2.90143676051299,0.618831764800233,1.65698687863958,0.672325146451775,0.602694528023977,1.46062018077475,1.95173119516203,1.10808952269109,3.67201244239655,0.940364164434263,1.43117993565528,0.684372125364421,1.12988375635323,0.840547463227464,0.985207073399349,0.787107813136792,0,0,0.77408061658038,0.919421224478927,3.614471025339,4.80680213216824,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0.671746422719773,1.29557466407592,1.03030227053675,0.436194716338694,0.755751887377619,0.242584061187816,0,0,0,0.28769239232215,0.256160706529101,0,0,0.645484683583826,0,0.376484679085209,0,0,0,0.320929027076094,0,0.329851300186716,0,0,0.580418477257168,0,0,0.502497330513487,0,0,0.605399502633369,0.368277635987565,0,0.211255286311942,0.425208599930087,0,0,0.150176892841506,0,0.285012743741249,0.19891667719909,0,0,0.546138611262131,0,0,0.400395987036012,1.14950487990897,0,0,1.70763890732835,0,0,0,0,0.263384084775077,0.590129310341499,0.393010762749165,0.411202997999018,0,0,0,0,0,0.589211814949674,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0.236777252044017,0,0,0,0.289648807765598,2.43806866313962,2.01210257911091,1.02290049474824,3.2529523714611,3.00802746381534,1.15877215168659,2.3858578411533,2.43317435151318,1.51255707462509,3.54767035940102,1.93236528524877,1.17881167947941,2.5500670180478,2.96627554227544,1.62273696827342,1.21890816109487,1.32957960518865,0,0,0,4.37277296206751,5.16140757063675,2.42998351125316,2.82653970962005,5.03399323451887,3.02629846134074,3.55291443112578,4.39308490587859,4.62496141492723,2.34304428935269,1.61131726843659,1.52054421143703,6.10155143870424,3.67663080345869,0.81014194788176,2.58969212023831,4.93964619777574,4.61707069981621,4.5994991239765,3.79706263827252,4.21364011039937,0,0,2.18047026071267,3.47880366186723,1.2663051166458,3.17782033951725,3.44203944898576,2.12801029319014,2.24271040056923,2.1349799145941,1.97334038733728,3.42332138939743,3.09834545760283,1.9615428373615,4.08665054641315,1.15235184896,1.64025002283658,4.37024107562449,0,2.54062756938062,2.46612447151906,1.29498355494505,1.26405726032024,2.44985005505872,1.84251475967652,2.16984140469107,2.37600571456411,3.21447008062124,4.55080680969013,3.59309070908119,1.34668891163253,2.12701483782339,3.87889761677856,2.19488810440419,1.83892677479412,2.70428506031874,0.907457465280168,2.51145489964407,1.92201649936711,1.90738711043606,2.70081986475962,2.57631323096097,3.86460810068444,1.11670113798954,3.88185564154912,2.53336213419116,2.52433774244115,1.74894807420369,0.646584227275248,2.84007674013291,2.21654616100809,1.69560592310488,0.966304265816484,2.18196896472668,3.44165514466805,0.365921118388786,0.265059536642971,0.232387885739037,0.932949495138334,0.756962552626885,0.72995471815166,4.69348596989448,2.57296375277154,2.76269842704961,1.39310378409594,0.721879481669586,0.709840800239063,1.18009283054671,0.964044119533928,1.21323370005633,1.30727666455444,0.474541238222193,0.808987848960987,0.784885860501384,0.38474715694639,3.69077727312324,4.20725321410337,3.7041661019826,7.3504355692771,5.07020139287323,2.94848165003288,5.31710916013264,0,1.22988438543114,1.3725424823882,2.19500570817251,3.37205259772859,2.6137532827024,1.48141512253647,1.62904152655162,3.11980435583874,0,1.15930404975077,1.87853910777315,2.30986316417718,0.925971025153221,1.52203321787679,0.790204397959275,0.858486162094873,0.738651018262192,0.936017060556951,0.445893486866185,0.93733833986777,2.01578553838631,1.84307626415102,2.50763863567975,2.3250715081117,2.68367875415648,1.97065295158377,0.352193736052904,1.4512968087854,0.864719720501769,0.25248486685276,1.46045156871989,1.90994212779139,1.17217447210047,1.71072446022705,1.13110241973656,0,0.857479297891735,2.35475277125258,2.61576041299968,1.24675085895615,1.55126058909333,3.57656445851882,0.845302752556,1.59562869950922,2.08014873822732,1.54324424557285,2.83698264046557,2.1313774321288,1.00084595560703,3.25572963234866,0.823240336780769,2.60588947434988,2.84313558994037,0,2.1100756394171,1.74306691720059,1.99945982364114,0,0,4.21667878966063,0.958499421966331,2.29723871668228,2.85273810081437,1.44781306667579,2.26023954805422,3.40215830155802,0,0,0.215627574859517,0.128343036279748,0.508189248444927,1.30139853857622,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,2.20844685094452,1.50051156317903,1.35632511849868,2.9115920614313,0.713715955188647,2.05013139544115,2.81139395982512,2.10662269809403,0,0,0.664225598535437,3.68738337083406,1.47702144595741,2.54541504701563,0.686286847621712,0.206768026122887,0.215714200818617,0.320182673410333,1.5156378572313,1.66435439510497,1.20956117331872,0,5.67809301165831,3.64858122762996,0.896974044789907,2.55853624533352,3.86049410744658,2.96836132889982,2.00472601943452,1.42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| |||
|short_description=p4@CDC42BPB | |||
}} |
Latest revision as of 14:31, 18 September 2015
Short description: | p4@CDC42BPB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDC42BPB_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_NM_006035, uc001ymi.1_5end |
EntrezGene: | CDC42BPB |
HGNC: | 1738 |
UniProt: | Q86XZ8Q9Y5S2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.61e-10 | 121 |
meso-epithelial cell | 1.62e-10 | 45 |
endothelial cell | 1.24e-09 | 36 |
fibroblast | 4.75e-09 | 76 |
embryonic cell | 1.65e-08 | 250 |
endothelial cell of vascular tree | 2.87e-08 | 24 |
blood vessel endothelial cell | 8.70e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.70e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 9.89e-19 | 240 |
cell layer | 1.32e-18 | 309 |
epithelium | 3.68e-18 | 306 |
epithelial tube | 5.77e-16 | 117 |
tube | 5.23e-15 | 192 |
vasculature | 4.53e-12 | 78 |
vascular system | 4.53e-12 | 78 |
splanchnic layer of lateral plate mesoderm | 1.02e-11 | 83 |
vessel | 4.37e-11 | 68 |
unilaminar epithelium | 6.22e-10 | 148 |
epithelial tube open at both ends | 6.37e-10 | 59 |
blood vessel | 6.37e-10 | 59 |
blood vasculature | 6.37e-10 | 59 |
vascular cord | 6.37e-10 | 59 |
trunk mesenchyme | 1.18e-09 | 122 |
circulatory system | 6.22e-09 | 112 |
trunk | 1.22e-08 | 199 |
mesenchyme | 1.91e-08 | 160 |
entire embryonic mesenchyme | 1.91e-08 | 160 |
cardiovascular system | 2.32e-08 | 109 |
blood vessel endothelium | 8.70e-08 | 18 |
endothelium | 8.70e-08 | 18 |
cardiovascular system endothelium | 8.70e-08 | 18 |
epithelial vesicle | 1.51e-07 | 78 |
simple squamous epithelium | 5.22e-07 | 22 |
developing anatomical structure | 8.78e-07 | 581 |