FFCP PHASE1:Hg19::chr1:170633194..170633205,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=strong | |||
|UniProt=P54821 | |||
|association_with_transcript=-107bp_to_NM_006902,NM_022716,uc001ghe.2,uc001ghf.2_5end | |||
|cluster_id=chr1:170633194..170633205,+ | |||
|description=CAGE_peak_18_at_PRRX1_5end | |||
|id=chr1:170633194..170633205,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.03e-28!180;CL:0000057!1.27e-20!75;CL:0002620!6.54e-13!23;CL:0000680!1.58e-12!57;CL:0000056!1.58e-12!57;CL:0000355!1.58e-12!57;CL:0000187!1.92e-11!54;CL:0000183!1.33e-10!59;CL:0000393!9.92e-10!60;CL:0000211!9.92e-10!60;CL:0000192!1.70e-07!42;CL:0000514!1.70e-07!42;CL:0000359!4.22e-07!32;CL:0002334!7.35e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.99e-13;23!CL:0000057;2.69e-09;73!CL:0002556;7.54e-09;6!CL:0002551;8.93e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.70e-22,76;CL:0002620,9.46e-14,23;CL:0000048,1.40e-09,427;CL:0000723,3.98e-09,433;CL:0002551,5.83e-09,6;CL:0002556,6.47e-09,6;CL:0000034,1.52e-08,441;CL:0000569,5.85e-07,4;CL:0000011,5.85e-07,4;CL:0000134,6.44e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.92e-20!83;UBERON:0002329!1.92e-20!83;UBERON:0003077!1.92e-20!83;UBERON:0003059!1.92e-20!83;UBERON:0007282!1.92e-20!83;UBERON:0009618!1.92e-20!83;UBERON:0007285!1.92e-20!83;UBERON:0004290!8.19e-18!70;UBERON:0000486!5.36e-15!82;UBERON:0003102!8.52e-14!95;UBERON:0001134!9.74e-14!61;UBERON:0002036!9.74e-14!61;UBERON:0003082!9.74e-14!61;UBERON:0002385!1.89e-13!63;UBERON:0001015!1.89e-13!63;UBERON:0000383!1.89e-13!63;UBERON:0000475!1.50e-11!365;UBERON:0002199!1.68e-09!45;UBERON:0002416!1.68e-09!45;UBERON:0005256!8.34e-09!143;UBERON:0002097!2.85e-08!40;UBERON:0000479!2.34e-07!787;UBERON:0000078!4.69e-07!18;UBERON:0000468!9.97e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;1.67e-09;9!UBERON:0001758;7.54e-09;6!UBERON:0003672;7.54e-09;6!UBERON:0003129;1.87e-07;7!UBERON:0002204;2.12e-07;70!UBERON:0002384;5.58e-07;198!UBERON:0002097;9.85e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.24e-13,99;UBERON:0007524,2.63e-10,73;UBERON:0004797,4.57e-10,7;UBERON:0002329,8.09e-10,71;UBERON:0003059,8.09e-10,71;UBERON:0007282,8.09e-10,71;UBERON:0004290,8.09e-10,71;UBERON:0009618,8.09e-10,71;UBERON:0002067,9.19e-10,9;UBERON:0004016,9.19e-10,9;UBERON:0010083,9.19e-10,9;UBERON:0003077,1.41e-09,72;UBERON:0007285,1.41e-09,72;UBERON:0002199,2.85e-09,46;UBERON:0002416,2.85e-09,46;UBERON:0001758,6.47e-09,6;UBERON:0003672,6.47e-09,6;UBERON:0000486,6.81e-09,83;UBERON:0002097,1.13e-08,41;UBERON:0007503,2.88e-08,78;UBERON:0003129,1.64e-07,7;UBERON:0002384,2.42e-07,371;UBERON:0000165,4.09e-07,29;UBERON:0000930,4.09e-07,29 | |||
|phase1_expression=0.908391896352783,1.49870366723688,0.563817616383885,6.00439790118782,0.893922188854576,6.97870819280295,0,1.26343974685366,0.261185628199839,0,0,0,0,0.123766352960047,0.662794751455832,2.01697543935533,0,2.92124036154949,2.92759679274304,0.246242116153576,0.204000691244253,0,0,0.684372125364421,0,0,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,6.14446559053763,0,1.01392563272577,1.5905718941022,0,0,0,0,0.196468613246569,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,1.01304409331664,1.85372853138506,2.29469296599051,2.83734705758686,0,0,0.49333509683432,0,1.61652806483626,0.980771418680752,0.151357427644931,0,0,2.18512053781224,1.1409436430889,1.94283284717341,3.05329696473789,1.45685649931318,1.40450806702248,1.22492502752936,0.61417158655884,0.516628905878827,3.56400857184616,3.95627086845691,0,0,1.5150250255866,1.87677779807946,1.10825646193673,2.19488810440419,1.22595118319608,4.95785594391769,0.113432183160021,1.79389635688862,0.427114777637135,0.211931901159562,0.600182192168805,1.64884046781502,1.03056216018252,1.11670113798954,1.85653965465393,3.41029518064195,4.29137416214995,0.460249493211497,6.30419621593366,0.710019185033229,1.41052937518696,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,1.3725424823882,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.784917590417525,1.74384027533312,0.51336800074665,0,0,1.690605505112,0.797814349754612,0,0.257207374262142,1.41849132023278,1.3321108950805,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,1.19812427745791,1.14861935834114,5.70547620162874,0.868687840005475,0.821905290201534,0.537182889719687,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0.24538298343828,0,0,3.32753378449291,2.3195768543631,2.05013139544115,3.39710103478868,0.601892199455438,0,3.10419213877515,1.32845119707087,0,1.30325421702124,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0.744323423456331,1.07423381301644,1.40330047216537,0.128139149255701,0,0.965123526861645,8.90508398669946,4.78050050788232,0.887808626565635,1.31403449622095,1.55776328755086,5.92672930145792,0,0,0,0,1.45672934405374,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,1.6068392984416,1.35339005608971,2.7728751080636,1.84204409671355,1.10269257987624,0.429680979473094,0.435050081742686,0.596586391912706,0.979352392114111,0,0,0,0,1.39453664789186,1.5740617341532,0.6970372701606,1.23213432070436,0.532306030317022,0,0.74129687641568,0.715624433709956,2.232950216158,0.316379424718726,0.38126038784765,0,0.42793898803392,0,0,0.359744915166629,0.274537029736055,0.117812402345686,1.01091240786658,0,1.26377536871694,0,0.731140468893853,0,3.00299805097569,0,0,0,0.66343897524122,0.876901770507525,0,1.9676842561399,0.405820753925408,0.6196469961995,1.12678241012897,0.573645408816206,0.491245205065606,0.35667105148125,1.06428319221179,1.26664581178598,3.95153871551882,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.796991953004279,0.276283915531148,0,0,0,1.24415835064723,0,0,0,0.493217028184668,0,2.22273980289274,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0,0,0,0.295547618953547,0.87754158861589,0,0,2.6163087891291,0,0,0,0,0.31900115973192,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.269604531922708,4.81546588379273,0.234264445725339,0,0,0,0.394584402849391,1.20990716048664,0,0.505492637027904,0,0,0,0,0,0,0,1.8027707491708,0,0,0,1.04836000945218,0.171986032471617,0,0,0,0.387956065953678,0,1.35588444468319,0,0.397429223405979,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0.209205692624666,0,0.288950589901519,0.600420288709789,0.136905378891993,0,0,0,1.39641200636127,1.14580212005842,3.58936512288407,0,0,0.446342914883745,0.134366944973453,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0.0524545881349981,0.105600336519406,0,0.191915197319445,1.42939065274673,0,1.5256112259285,0,0,0.653174720218818,0,0,1.19271615249795,0,0,0,1.16354660725395,0.39669780522807,0,0,0.533937062838473,0,0.414239055347196,0.496166021811951,0,0,0,0.544017803369474,0,0.612691153526923,0,0,0,0.366078794705889,0.1251909307065,0,0,0,0,0,0.151649117541648,0,0,0,0,4.47764408660622,3.03827302801392,1.10961172300523,1.32582103692562,1.25783950876288,1.77962244319307,1.83072054717539,3.02461847526478,2.64243240990727,1.47855149989634,0.63718706865481,2.24901556081802,0.931577741257556,2.90294345488599,1.06336685823198,1.04349012362347,0,0,1.22061219961398,0.181848659202559,0.322231671127465,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| |||
|short_description=p18@PRRX1 | |||
}} |
Latest revision as of 14:20, 18 September 2015
Short description: | p18@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_PRRX1_5end |
Coexpression cluster: | NA |
Association with transcript: | -107bp_to_NM_006902, NM_022716, uc001ghe.2, uc001ghf.2_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.70e-22 | 76 |
skin fibroblast | 9.46e-14 | 23 |
multi fate stem cell | 1.40e-09 | 427 |
somatic stem cell | 3.98e-09 | 433 |
fibroblast of dermis | 5.83e-09 | 6 |
fibroblast of periodontium | 6.47e-09 | 6 |
stem cell | 1.52e-08 | 441 |
cardiac mesenchymal cell | 5.85e-07 | 4 |
migratory trunk neural crest cell | 5.85e-07 | 4 |
mesenchymal cell | 6.44e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.24e-13 | 99 |
dense mesenchyme tissue | 2.63e-10 | 73 |
blood vessel layer | 4.57e-10 | 7 |
somite | 8.09e-10 | 71 |
presomitic mesoderm | 8.09e-10 | 71 |
presumptive segmental plate | 8.09e-10 | 71 |
dermomyotome | 8.09e-10 | 71 |
trunk paraxial mesoderm | 8.09e-10 | 71 |
dermis | 9.19e-10 | 9 |
dermatome | 9.19e-10 | 9 |
future dermis | 9.19e-10 | 9 |
paraxial mesoderm | 1.41e-09 | 72 |
presumptive paraxial mesoderm | 1.41e-09 | 72 |
integument | 2.85e-09 | 46 |
integumental system | 2.85e-09 | 46 |
periodontium | 6.47e-09 | 6 |
dentition | 6.47e-09 | 6 |
multilaminar epithelium | 6.81e-09 | 83 |
skin of body | 1.13e-08 | 41 |
epithelial vesicle | 2.88e-08 | 78 |
skull | 1.64e-07 | 7 |
connective tissue | 2.42e-07 | 371 |
mouth | 4.09e-07 | 29 |
stomodeum | 4.09e-07 | 29 |