FFCP PHASE1:Hg19::chr4:74608397..74608406,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:74608397..74608406,+
|short_description=p15@IL8
|description=CAGE_peak_15_at_IL8_5end
|association_with_transcript=-448bp_to_AJ227913_5end
|EntrezGene=357...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3576 | |EntrezGene=3576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6025 | |HGNC=6025 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-448bp_to_AJ227913_5end | |||
|cluster_id=chr4:74608397..74608406,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_15_at_IL8_5end | |||
|id=chr4:74608397..74608406,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.46e-50!42;CL:0000860!4.74e-46!45;CL:0000766!3.46e-38!76;CL:0002009!2.76e-35!65;CL:0002194!3.04e-34!63;CL:0000576!3.04e-34!63;CL:0000040!3.04e-34!63;CL:0000559!3.04e-34!63;CL:0000557!1.54e-31!71;CL:0000839!6.09e-30!70;CL:0000763!1.00e-25!112;CL:0000049!1.00e-25!112;CL:0000738!1.49e-19!140;CL:0002087!2.98e-16!119;CL:0002031!2.69e-15!124;CL:0002032!4.89e-15!165;CL:0000837!4.89e-15!165;CL:0000037!6.10e-15!172;CL:0000566!6.10e-15!172;CL:0000359!1.85e-14!32;CL:0000988!1.54e-13!182;CL:0000048!3.52e-12!430;CL:0000723!8.63e-12!436;CL:0000034!2.74e-11!444;CL:0000192!3.93e-10!42;CL:0000514!3.93e-10!42;CL:0000680!9.82e-10!57;CL:0000056!9.82e-10!57;CL:0000355!9.82e-10!57;CL:0000775!3.90e-09!3;CL:0002539!5.40e-09!10;CL:0000094!8.44e-09!8;CL:0000187!3.88e-08!54;CL:0002371!2.99e-07!591;CL:0000183!3.86e-07!59;CL:0000393!5.81e-07!60;CL:0000211!5.81e-07!60;CL:0000771!6.29e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.93e-43;33!CL:0002057;6.93e-43;33!CL:0000473;3.49e-30;39!CL:0000234;3.49e-30;39!CL:0000576;5.79e-24;48!CL:0000094;2.68e-22;8!CL:0000775;1.32e-21;3!CL:0000766;1.56e-21;69!CL:0000081;3.46e-16;11!CL:0000771;6.44e-16;2!CL:0000763;9.24e-13;100!CL:0002087;2.33e-10;104!CL:0002594;5.52e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.43e-46,42;CL:0002057,2.43e-46,42;CL:0000766,8.53e-44,72;CL:0000473,3.77e-40,48;CL:0000234,3.77e-40,48;CL:0002194,1.77e-31,59;CL:0000576,1.77e-31,59;CL:0000040,1.77e-31,59;CL:0000559,1.77e-31,59;CL:0002009,2.34e-30,61;CL:0000763,5.05e-28,108;CL:0000049,5.05e-28,108;CL:0000839,7.51e-28,66;CL:0000557,2.15e-27,67;CL:0000094,2.01e-22,8;CL:0000775,8.29e-22,3;CL:0000738,1.79e-21,136;CL:0002032,1.57e-17,161;CL:0000837,1.57e-17,161;CL:0000037,1.23e-16,168;CL:0000081,2.81e-16,11;CL:0000771,6.45e-16,2;CL:0000988,1.38e-15,177;CL:0002087,1.05e-14,115;CL:0002031,5.82e-14,120;CL:0000048,1.23e-08,427;CL:0000723,1.89e-08,433;CL:0000034,3.28e-08,441;CL:0002594,6.03e-08,4 | |||
|ontology_enrichment_development_v019=CL:0002057;4.00e-33;42!CL:0000049;5.56e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!6.73e-29!167;UBERON:0002371!5.70e-27!80;UBERON:0001474!1.86e-24!86;UBERON:0004765!6.17e-21!101;UBERON:0001434!6.17e-21!101;UBERON:0002193!1.13e-20!112;UBERON:0002390!1.36e-20!102;UBERON:0003061!1.36e-20!102;UBERON:0002405!7.78e-20!115;UBERON:0003081!2.10e-17!216;UBERON:0001637!4.44e-10!42;UBERON:0003509!4.44e-10!42;UBERON:0004572!4.44e-10!42;UBERON:0004237!5.40e-09!10;UBERON:0004695!5.40e-09!10;UBERON:0002111!5.40e-09!10;UBERON:0004178!5.40e-09!10;UBERON:0001134!8.16e-09!61;UBERON:0002036!8.16e-09!61;UBERON:0003082!8.16e-09!61;UBERON:0002385!2.12e-08!63;UBERON:0001015!2.12e-08!63;UBERON:0000383!2.12e-08!63;UBERON:0004573!2.15e-08!33;UBERON:0004571!2.15e-08!33;UBERON:0000055!1.86e-07!69;UBERON:0000926!3.65e-07!448;UBERON:0004120!3.65e-07!448;UBERON:0006603!3.65e-07!448;UBERON:0004290!3.78e-07!70;UBERON:0001981!5.49e-07!60;UBERON:0007500!5.49e-07!60;UBERON:0004537!5.49e-07!60;UBERON:0006965!5.49e-07!60;UBERON:0002049!7.70e-07!79;UBERON:0007798!7.70e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;5.52e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.22e-24,76;UBERON:0001474,7.45e-22,82;UBERON:0004765,1.20e-19,90;UBERON:0002405,6.49e-19,93;UBERON:0002390,8.57e-18,98;UBERON:0003061,8.57e-18,98;UBERON:0001434,2.24e-17,100;UBERON:0002204,1.23e-16,167;UBERON:0002193,7.35e-16,108;UBERON:0003081,2.05e-14,203;UBERON:0001310,6.03e-08,4;UBERON:0000926,8.70e-08,315;UBERON:0004120,8.70e-08,315;UBERON:0006603,8.70e-08,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10799081706375,0.401088894940283,1.30206522429511,0,0,0,0.290796477559129,0,0,0.697287110717054,0.822335776043652,0,2.3015391385772,1.0246428261164,1.41889337933151,9.65287906062532,3.22742341791913,6.77132432971709,0.376484679085209,0.545812300115692,1.34834090667051,11.0190201253525,2.88836124368484,10.8687311385837,0,0.199463657621632,0,6.09439401120026,4.53908179752912,13.0792672289071,0.75374599577023,0.521482918420201,0.65156653411535,5.44859552370032,0.736555271975129,7.91155968602211,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,11.6334079244498,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0.128343036279748,0,0,0,0,0,1.49801404789436,2.99161459204025,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0.202182481573316,4.75530963519025,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,1.21746226177622,0.6196469961995,0,0,0,2.1400263088875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5745161103971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,1.20538905604795,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10799081706375,0.401088894940283,1.30206522429511,0,0,0,0.290796477559129,0,0,0.697287110717054,0.822335776043652,0,2.3015391385772,1.0246428261164,1.41889337933151,9.65287906062532,3.22742341791913,6.77132432971709,0.376484679085209,0.545812300115692,1.34834090667051,11.0190201253525,2.88836124368484,10.8687311385837,0,0.199463657621632,0,6.09439401120026,4.53908179752912,13.0792672289071,0.75374599577023,0.521482918420201,0.65156653411535,5.44859552370032,0.736555271975129,7.91155968602211,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,11.6334079244498,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0.128343036279748,0,0,0,0,0,1.49801404789436,2.99161459204025,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0.202182481573316,4.75530963519025,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,1.21746226177622,0.6196469961995,0,0,0,2.1400263088875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5745161103971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p15@IL8 | |||
}} | }} |
Latest revision as of 14:18, 18 September 2015
Short description: | p15@IL8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_IL8_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -448bp_to_AJ227913_5end |
EntrezGene: | IL8 |
HGNC: | 6025 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.43e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.43e-46 | 42 |
myeloid leukocyte | 8.53e-44 | 72 |
defensive cell | 3.77e-40 | 48 |
phagocyte | 3.77e-40 | 48 |
monopoietic cell | 1.77e-31 | 59 |
monocyte | 1.77e-31 | 59 |
monoblast | 1.77e-31 | 59 |
promonocyte | 1.77e-31 | 59 |
macrophage dendritic cell progenitor | 2.34e-30 | 61 |
myeloid cell | 5.05e-28 | 108 |
common myeloid progenitor | 5.05e-28 | 108 |
myeloid lineage restricted progenitor cell | 7.51e-28 | 66 |
granulocyte monocyte progenitor cell | 2.15e-27 | 67 |
granulocyte | 2.01e-22 | 8 |
neutrophil | 8.29e-22 | 3 |
leukocyte | 1.79e-21 | 136 |
hematopoietic oligopotent progenitor cell | 1.57e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.57e-17 | 161 |
hematopoietic stem cell | 1.23e-16 | 168 |
blood cell | 2.81e-16 | 11 |
eosinophil | 6.45e-16 | 2 |
hematopoietic cell | 1.38e-15 | 177 |
nongranular leukocyte | 1.05e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 5.82e-14 | 120 |
multi fate stem cell | 1.23e-08 | 427 |
somatic stem cell | 1.89e-08 | 433 |
stem cell | 3.28e-08 | 441 |
smooth muscle cell of the umbilical artery | 6.03e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.22e-24 | 76 |
bone element | 7.45e-22 | 82 |
skeletal element | 1.20e-19 | 90 |
immune system | 6.49e-19 | 93 |
hematopoietic system | 8.57e-18 | 98 |
blood island | 8.57e-18 | 98 |
skeletal system | 2.24e-17 | 100 |
musculoskeletal system | 1.23e-16 | 167 |
hemolymphoid system | 7.35e-16 | 108 |
lateral plate mesoderm | 2.05e-14 | 203 |
umbilical artery | 6.03e-08 | 4 |
mesoderm | 8.70e-08 | 315 |
mesoderm-derived structure | 8.70e-08 | 315 |
presumptive mesoderm | 8.70e-08 | 315 |