FFCP PHASE1:Hg19::chr1:170632723..170632739,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:170632723..170632739,+ to FFCP PHASE1:Hg19::chr1:170632723..170632739,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5396 | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |HGNC=9142 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-307bp_to_ENST00000239461_5end | |||
|cluster_id=chr1:170632723..170632739,+ | |||
|coexpression_cluster_id=C929 | |||
|description=CAGE_peak_8_at_PRRX1_5end | |||
|id=chr1:170632723..170632739,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.52e-43!180;CL:0000057!7.00e-24!75;CL:0000680!1.29e-19!57;CL:0000056!1.29e-19!57;CL:0000355!1.29e-19!57;CL:0000187!1.91e-18!54;CL:0000183!1.58e-16!59;CL:0000393!6.46e-16!60;CL:0000211!6.46e-16!60;CL:0000192!2.03e-13!42;CL:0000514!2.03e-13!42;CL:0002620!3.31e-13!23;CL:0000359!3.52e-12!32;CL:0000048!7.57e-11!430;CL:0000723!6.24e-10!436;CL:0000034!5.03e-09!444;CL:0002334!6.07e-09!12;CL:0002570!8.88e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.90e-17;23!CL:0000359;1.97e-11;32!CL:0002334;2.93e-11;12!CL:0000057;2.42e-10;73!CL:0000187;1.39e-09;55!CL:0000192;2.41e-09;43!CL:0002320;9.00e-09;188!CL:0002570;2.31e-08;8!CL:0002539;5.48e-08;10!CL:0000393;5.67e-08;61!CL:0000211;5.67e-08;61!CL:0000499;7.79e-08;28!CL:0000188;1.09e-07;9!CL:0000723;1.15e-07;61!CL:0000134;3.49e-07;55!CL:0000327;7.55e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.81e-28,76;CL:0000048,2.17e-22,427;CL:0000723,2.28e-21,433;CL:0000034,4.67e-20,441;CL:0000680,7.47e-18,58;CL:0000056,7.47e-18,58;CL:0000355,7.47e-18,58;CL:0002620,3.44e-17,23;CL:0000187,2.06e-16,55;CL:0000393,1.70e-13,61;CL:0000211,1.70e-13,61;CL:0000359,1.05e-11,32;CL:0000192,1.07e-11,43;CL:0000514,1.07e-11,43;CL:0002334,2.66e-11,12;CL:0002320,6.44e-11,361;CL:0000134,3.40e-10,354;CL:0002570,1.88e-08,8;CL:0000219,1.90e-08,386;CL:0002539,5.01e-08,10;CL:0000499,6.61e-08,28;CL:0000188,1.21e-07,9;CL:0000327,7.15e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;1.47e-10;58!CL:0000514;2.41e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.50e-30!83;UBERON:0002329!4.50e-30!83;UBERON:0003077!4.50e-30!83;UBERON:0003059!4.50e-30!83;UBERON:0007282!4.50e-30!83;UBERON:0009618!4.50e-30!83;UBERON:0007285!4.50e-30!83;UBERON:0004290!3.04e-27!70;UBERON:0000486!1.37e-22!82;UBERON:0001134!5.30e-22!61;UBERON:0002036!5.30e-22!61;UBERON:0003082!5.30e-22!61;UBERON:0002385!3.11e-21!63;UBERON:0001015!3.11e-21!63;UBERON:0000383!3.11e-21!63;UBERON:0000475!6.73e-16!365;UBERON:0003102!1.08e-15!95;UBERON:0002199!2.59e-13!45;UBERON:0002416!2.59e-13!45;UBERON:0005256!2.09e-12!143;UBERON:0002097!1.46e-10!40;UBERON:0004872!1.43e-09!84;UBERON:0001637!3.15e-09!42;UBERON:0003509!3.15e-09!42;UBERON:0004572!3.15e-09!42;UBERON:0001013!3.88e-09!14;UBERON:0002100!7.85e-09!216;UBERON:0004573!1.00e-08!33;UBERON:0004571!1.00e-08!33;UBERON:0000479!6.81e-07!787;UBERON:0001981!9.98e-07!60;UBERON:0007500!9.98e-07!60;UBERON:0004537!9.98e-07!60;UBERON:0006965!9.98e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;7.21e-14;31!UBERON:0001015;7.21e-14;31!UBERON:0000383;7.21e-14;31!UBERON:0001134;3.49e-12;16!UBERON:0002036;3.49e-12;16!UBERON:0002199;1.56e-11;46!UBERON:0002416;1.56e-11;46!UBERON:0001013;1.96e-11;14!UBERON:0004573;5.77e-11;33!UBERON:0004571;5.77e-11;33!UBERON:0002097;7.46e-11;41!UBERON:0002204;1.48e-10;70!UBERON:0003102;1.93e-10;50!UBERON:0002384;2.15e-10;198!UBERON:0002067;2.26e-08;9!UBERON:0004237;5.48e-08;10!UBERON:0004695;5.48e-08;10!UBERON:0002111;5.48e-08;10!UBERON:0004178;5.48e-08;10!UBERON:0001637;1.50e-07;42!UBERON:0003509;1.50e-07;42!UBERON:0004572;1.50e-07;42!UBERON:0001434;7.03e-07;36!UBERON:0000947;7.99e-07;21!UBERON:0010191;7.99e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.24e-27,73;UBERON:0002329,4.32e-27,71;UBERON:0003059,4.32e-27,71;UBERON:0007282,4.32e-27,71;UBERON:0004290,4.32e-27,71;UBERON:0009618,4.32e-27,71;UBERON:0003077,1.97e-26,72;UBERON:0007285,1.97e-26,72;UBERON:0000486,7.52e-24,83;UBERON:0007503,7.41e-23,78;UBERON:0001134,1.07e-20,62;UBERON:0002036,1.07e-20,62;UBERON:0003082,1.07e-20,62;UBERON:0002385,1.54e-19,64;UBERON:0001015,1.54e-19,64;UBERON:0000383,1.54e-19,64;UBERON:0002199,2.60e-18,46;UBERON:0002416,2.60e-18,46;UBERON:0003102,1.86e-15,99;UBERON:0002097,1.30e-14,41;UBERON:0005256,3.93e-12,122;UBERON:0004573,4.36e-12,33;UBERON:0004571,4.36e-12,33;UBERON:0002384,9.57e-12,371;UBERON:0001013,1.47e-11,14;UBERON:0003104,2.20e-10,160;UBERON:0009142,2.20e-10,160;UBERON:0001637,2.43e-10,42;UBERON:0003509,2.43e-10,42;UBERON:0004572,2.43e-10,42;UBERON:0002204,7.26e-10,167;UBERON:0000926,1.43e-08,315;UBERON:0004120,1.43e-08,315;UBERON:0006603,1.43e-08,315;UBERON:0002067,2.30e-08,9;UBERON:0004016,2.30e-08,9;UBERON:0010083,2.30e-08,9;UBERON:0004237,5.01e-08,10;UBERON:0004695,5.01e-08,10;UBERON:0002111,5.01e-08,10;UBERON:0004178,5.01e-08,10;UBERON:0004872,3.20e-07,83;UBERON:0007500,5.63e-07,59;UBERON:0001981,5.63e-07,59;UBERON:0004537,5.63e-07,59;UBERON:0006965,5.63e-07,59;UBERON:0000947,7.60e-07,21;UBERON:0010191,7.60e-07,21;UBERON:0002100,9.97e-07,199 | |||
|phase1_expression=5.63202975738726,2.5692062866918,1.83240725324762,3.00219895059391,0.893922188854576,2.61701557230111,7.59899634504932,5.05375898741465,2.61185628199839,0,0,0,0,2.84662611808107,2.31978163009541,2.6893005858071,2.41077811209591,7.30310090387373,5.36726078669558,0.123121058076788,0.204000691244253,0,0.572471974262113,0.136874425072884,0.502170558379211,1.06978768047132,1.47781061009902,1.02324015707783,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.383587685530591,7.59022220007589,7.52006865953834,3.18662341713812,9.54343136461319,3.40644409211845,0,0,0.087834785693126,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,13.9152146474689,4.81195944325403,5.95841313659485,8.3182620017156,6.02936249737207,1.12135520028461,0,0.74000264525148,2.48968828319813,0.269421344139376,0.490385709340376,0.302714855289863,0.576175924479999,1.64025002283658,9.67696238173994,4.56377457235559,7.92078006924546,5.98915943083201,5.17993421978021,5.33713065468544,4.89970011011744,2.57952066354713,4.13303124703062,3.56400857184616,6.67620709052104,0,0,3.53505839303539,5.88057043398232,10.528436388399,6.14568669233173,2.45190236639216,8.71380741658261,0.794025282120147,6.81680615617675,4.48470516518992,3.39091041855299,4.50136644126603,3.7098910525838,5.92573242104947,4.65292140828975,9.11392194102838,9.06164147999147,3.78650661366172,3.49789614840738,8.89053312503465,7.4552014428489,4.23158812556089,3.56077243852024,0,0,0,0,0,0.348581828608555,0,0,0,6.25798129319264,9.00537313470039,1.38134921352481,7.42988684851167,1.44375896333917,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.651616610620649,7.27954349695705,0,0.115930404975077,0.939269553886573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0.205654985406647,0,0,2.5790149399433,1.30788020649984,3.88692914851035,0.258543431515556,3.57656445851882,5.917119267892,1.59562869950922,4.16029747645464,1.80045161983499,0,1.8649552531127,0,1.62786481617433,0,4.88604276440603,0,0,0,0,0,0,0,0,3.35474797688216,9.18895486672911,24.2482738569221,4.05387658669222,2.87666851570537,1.61154866915906,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,2.08575535922538,4.50153468953709,0.542530047399471,15.8057854763413,13.5606031485843,10.5660618072736,15.4626667790381,5.71797589482666,2.27407504055985,2.0694614258501,6.64225598535437,4.42486004500088,7.81952530212746,0.195801157462741,0.686286847621712,0,0,0,0,0,0,10.4205279283886,10.7423381301644,5.05188169979532,2.81906128362542,8.69902323413396,3.21707842287215,1.48418066444991,11.7199367290018,11.7190738706664,18.2322286350656,4.67328986265259,10.2265133044764,0,0,0,0.574072240823034,2.54927635209404,1.44236856455367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.309123034943167,0,0,1.72279661398852,0.650060246036521,4.82051789532479,9.18371823775159,3.08097234229289,1.68854042198743,6.06480918931935,4.18938954986267,2.32026710262766,3.49429172406014,6.6774026735053,0,0,0,0,3.253918845081,7.24068397710472,5.5762981612848,2.7723022215848,2.66153015158511,7.82939692867565,3.15051172476664,1.00187420719394,1.48863347743867,0.316379424718726,0.190630193923825,1.79128453917934,2.99557291623744,9.5460974377781,1.56989728039846,0.539617372749944,0.274537029736055,0.353437207037059,1.41527737101321,3.17020642346017,1.68503382495592,0,4.87426979262569,2.11300293513511,4.50449707646353,0.424216295861138,6.78048699721457,4.41092274836899,1.32687795048244,1.31535265576129,1.15755106853338,2.62357900818653,0.811641507850816,1.54911749049875,2.25356482025793,1.14729081763241,0.687743287091848,0.35667105148125,3.90237170477658,6.33322905892992,7.90307743103764,1.89736586882858,1.39973888097993,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4906390476222,0,0,0,0,0.593929361665277,0,0,0,0,0,0,1.39473591775749,0.276283915531148,0,0,2.8309505256046,2.79935628895627,0,0,0,0.394573622547734,0,2.22273980289274,0,0.556608588971108,0,0,0,1.44999915086959,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0.110579259931225,0,0.438770794307945,0,0,3.15496059865568,0.227884111694002,0,0,0,0.31900115973192,1.4655614944298,0,0,0,0,0,0,0,0,0,0,0,0,0.649165919226273,0.995261931078505,0,0,0,0,0,0.269604531922708,6.42062117839031,0,0,0,0,0,0,0,17.1867496589487,0,0,0,0,0,0,0,4.99228822847299,0,0,0,0.873633341210151,0.51595809741485,0,0,0,0.484945082442097,0,1.80784592624426,0,1.58971689362392,0.126621591911757,0,0.0801588202515337,0,0,0,0,0,0,0,0,1.22313785466253,0.941425616810999,0,0.866851769704557,0.600420288709789,0.136905378891993,0,0,0,1.39641200636127,0,1.43574604915363,0,0,0,0.403100834920358,3.2426989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| ||
|short_description=p8@PRRX1 | |||
}} | }} |
Latest revision as of 14:17, 18 September 2015
Short description: | p8@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PRRX1_5end |
Coexpression cluster: | C929_myxofibrosarcoma_Fibroblast_normal_Olfactory_mesenchymal_dura_Preadipocyte |
Association with transcript: | -307bp_to_ENST00000239461_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.81e-28 | 76 |
multi fate stem cell | 2.17e-22 | 427 |
somatic stem cell | 2.28e-21 | 433 |
stem cell | 4.67e-20 | 441 |
muscle precursor cell | 7.47e-18 | 58 |
myoblast | 7.47e-18 | 58 |
multi-potent skeletal muscle stem cell | 7.47e-18 | 58 |
skin fibroblast | 3.44e-17 | 23 |
muscle cell | 2.06e-16 | 55 |
electrically responsive cell | 1.70e-13 | 61 |
electrically active cell | 1.70e-13 | 61 |
vascular associated smooth muscle cell | 1.05e-11 | 32 |
smooth muscle cell | 1.07e-11 | 43 |
smooth muscle myoblast | 1.07e-11 | 43 |
preadipocyte | 2.66e-11 | 12 |
connective tissue cell | 6.44e-11 | 361 |
mesenchymal cell | 3.40e-10 | 354 |
mesenchymal stem cell of adipose | 1.88e-08 | 8 |
motile cell | 1.90e-08 | 386 |
aortic smooth muscle cell | 5.01e-08 | 10 |
stromal cell | 6.61e-08 | 28 |
cell of skeletal muscle | 1.21e-07 | 9 |
extracellular matrix secreting cell | 7.15e-07 | 15 |