FFCP PHASE1:Hg19::chr1:170632683..170632696,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:170632683..170632696,+ to FFCP PHASE1:Hg19::chr1:170632683..170632696,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5396 | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |HGNC=9142 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-350bp_to_ENST00000239461_5end | |||
|cluster_id=chr1:170632683..170632696,+ | |||
|coexpression_cluster_id=C929 | |||
|description=CAGE_peak_12_at_PRRX1_5end | |||
|id=chr1:170632683..170632696,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.64e-33!180;CL:0000057!1.08e-21!75;CL:0000680!2.67e-13!57;CL:0000056!2.67e-13!57;CL:0000355!2.67e-13!57;CL:0000187!4.85e-12!54;CL:0002620!6.86e-12!23;CL:0000183!4.09e-11!59;CL:0000393!5.40e-10!60;CL:0000211!5.40e-10!60;CL:0002334!6.13e-10!12;CL:0000192!3.43e-09!42;CL:0000514!3.43e-09!42;CL:0000359!3.90e-09!32;CL:0000048!1.76e-08!430;CL:0000723!9.83e-08!436;CL:0000034!5.50e-07!444;CL:0000136!7.91e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.51e-15;23!CL:0002334;5.39e-12;12!CL:0000057;1.62e-09;73!CL:0002539;1.71e-07;10!CL:0000359;3.36e-07;32!CL:0002320;4.26e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.18e-26,76;CL:0002620,1.31e-15,23;CL:0000048,8.44e-15,427;CL:0000723,4.43e-14,433;CL:0000034,3.71e-13,441;CL:0002334,4.84e-12,12;CL:0000134,1.27e-08,354;CL:0000680,1.42e-08,58;CL:0000056,1.42e-08,58;CL:0000355,1.42e-08,58;CL:0002320,2.85e-08,361;CL:0002539,2.07e-07,10;CL:0000359,2.82e-07,32;CL:0000187,3.12e-07,55;CL:0000219,6.33e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.67e-22!83;UBERON:0002329!6.67e-22!83;UBERON:0003077!6.67e-22!83;UBERON:0003059!6.67e-22!83;UBERON:0007282!6.67e-22!83;UBERON:0009618!6.67e-22!83;UBERON:0007285!6.67e-22!83;UBERON:0004290!2.02e-19!70;UBERON:0000486!1.65e-16!82;UBERON:0001134!6.29e-15!61;UBERON:0002036!6.29e-15!61;UBERON:0003082!6.29e-15!61;UBERON:0000475!9.38e-15!365;UBERON:0002385!1.10e-14!63;UBERON:0001015!1.10e-14!63;UBERON:0000383!1.10e-14!63;UBERON:0003102!5.42e-13!95;UBERON:0002199!3.02e-12!45;UBERON:0002416!3.02e-12!45;UBERON:0002097!6.88e-10!40;UBERON:0005256!7.50e-09!143;UBERON:0000479!1.73e-08!787;UBERON:0004573!3.23e-08!33;UBERON:0004571!3.23e-08!33;UBERON:0001013!6.45e-08!14;UBERON:0002100!2.38e-07!216;UBERON:0001637!2.39e-07!42;UBERON:0003509!2.39e-07!42;UBERON:0004572!2.39e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;5.77e-11;41!UBERON:0002199;6.30e-11;46!UBERON:0002416;6.30e-11;46!UBERON:0003102;2.00e-09;50!UBERON:0002384;5.35e-09;198!UBERON:0002385;1.66e-08;31!UBERON:0001015;1.66e-08;31!UBERON:0000383;1.66e-08;31!UBERON:0001013;1.83e-08;14!UBERON:0004573;2.00e-08;33!UBERON:0004571;2.00e-08;33!UBERON:0002067;2.34e-08;9!UBERON:0004237;1.71e-07;10!UBERON:0004695;1.71e-07;10!UBERON:0002111;1.71e-07;10!UBERON:0004178;1.71e-07;10!UBERON:0000947;4.34e-07;21!UBERON:0010191;4.34e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.84e-17,46;UBERON:0002416,2.84e-17,46;UBERON:0007524,2.58e-15,73;UBERON:0002329,6.81e-15,71;UBERON:0003059,6.81e-15,71;UBERON:0007282,6.81e-15,71;UBERON:0004290,6.81e-15,71;UBERON:0009618,6.81e-15,71;UBERON:0002097,1.08e-14,41;UBERON:0003077,1.65e-14,72;UBERON:0007285,1.65e-14,72;UBERON:0003102,7.53e-13,99;UBERON:0000486,1.06e-12,83;UBERON:0007503,1.96e-12,78;UBERON:0001134,8.58e-10,62;UBERON:0002036,8.58e-10,62;UBERON:0003082,8.58e-10,62;UBERON:0004573,1.92e-09,33;UBERON:0004571,1.92e-09,33;UBERON:0002385,3.35e-09,64;UBERON:0001015,3.35e-09,64;UBERON:0000383,3.35e-09,64;UBERON:0002384,6.07e-09,371;UBERON:0001013,1.20e-08,14;UBERON:0002067,1.64e-08,9;UBERON:0004016,1.64e-08,9;UBERON:0010083,1.64e-08,9;UBERON:0004237,2.07e-07,10;UBERON:0004695,2.07e-07,10;UBERON:0002111,2.07e-07,10;UBERON:0004178,2.07e-07,10;UBERON:0000947,3.79e-07,21;UBERON:0010191,3.79e-07,21;UBERON:0001637,5.90e-07,42;UBERON:0003509,5.90e-07,42;UBERON:0004572,5.90e-07,42 | |||
|phase1_expression=3.99692434395225,3.42560838225573,1.69145284915165,5.00366491765652,0.446961094427288,3.48935409640147,2.53299878168311,2.52687949370732,0.522371256399677,0,0,0,0,0.247532705920093,0.331397375727916,7.39557661096953,4.21886169616784,2.19093027116212,5.36726078669558,0,0.204000691244253,0,0.286235987131057,0,0.251085279189606,1.83392173795083,2.13461532569859,1.96776953284198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,2.53007406669196,3.50936537445123,2.89693037921647,4.7717156823066,2.91980922181582,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,8.94549513051573,2.78587125662075,2.64818361626438,4.58938593198102,2.83734705758686,0,0,0.74000264525148,1.24484414159907,0.404132016209064,0.490385709340376,0.302714855289863,0.576175924479999,0.70296429550139,4.05808099879417,2.85235910772225,2.24173020827702,1.17434498643765,1.94247533241758,1.82586048712923,1.63323337003915,1.22834317311768,2.27316718586684,2.37600571456411,5.43987244412825,0,0,1.17835279767846,1.37630371859161,3.04770527032601,3.5118209670467,2.14541457059314,9.16452159330241,0.113432183160021,2.87023417102179,2.77624605464138,0.635795703478686,1.20036438433761,1.33968288009971,3.60696756063881,2.04728541964749,5.23206629947925,4.38466523225394,2.01947019395292,2.39329736469978,7.43571861366535,3.55009592516614,1.30977727695932,1.52604533079439,0,0,0,0,0,0,0.10366105501537,0,0,10.9514672630871,5.14592750554308,1.38134921352481,4.64367928031979,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0.325808305310325,0,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0.205654985406647,0,0,1.00917975910825,0.43596006883328,1.1734125731352,0.258543431515556,0,0.845302752556,1.86156681609409,0,0.771622122786426,0,1.3321108950805,0,0,0,1.95441710576241,0,0.791951872933429,0,0,0,0,0,0,1.91699884393266,3.44585807502342,11.4109524032575,2.02693829334611,2.26023954805422,1.79060963239896,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.613457458595699,0,0.271265023699736,14.9739020302181,12.133171238207,12.6161932027148,12.2998485742349,0.902838299183157,4.5481500811197,2.0694614258501,3.98535359121262,1.65932251687533,3.30157734978715,0.587403472388222,1.02943027143257,0,0,0,0,0,0.30239029332968,8.18755765801964,7.82656063769118,7.29716245525991,4.48487022394953,7.16390148693385,0.965123526861645,5.93672265779964,5.24312958929029,4.97172830876756,6.81655394914616,2.59627214591811,4.18357362455853,0,0,0,0.229628896329213,0.546273504020151,1.18011973463482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,1.14853107599234,0,0,2.61010939388729,0.462145851343933,0.614014698904518,0.413509717453592,1.18162269355101,2.0302337147992,0.681813019328807,2.75999310504886,0,0,0,0,1.39453664789186,2.83331112147576,0.6970372701606,2.15623506123262,1.06461206063404,1.73986598415015,0.55597265731176,1.14499909393593,1.48863347743867,1.2655176988749,0.38126038784765,0.511795582622668,1.28381696410176,3.81843897511124,0,0,0.274537029736055,0.471249609382746,1.01091240786658,0,1.68503382495592,0,1.70599442741899,1.05650146756755,1.22849920267187,0.282810863907425,2.26016233240486,4.41092274836899,0.66343897524122,1.31535265576129,0,2.62357900818653,0.405820753925408,0.30982349809975,0.845086807596724,0.430234056612155,0,0,1.06428319221179,2.32218398827431,6.25660296623814,1.13841952129715,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3441308683503,0,0,0,0,0,0,0,0,0,0,0,2.39097585901284,0,0,0,2.95403533106567,3.11039587661807,0,0,0,0.690503839458535,0,1.11136990144637,0,0.463840490809256,0,0,0,2.17499872630438,0,0,0,0,0,0,0.885741385813839,0.361789315876224,0,0.221158519862449,0.591095237907095,0.219385397153973,0,0,4.84786628573922,0.227884111694002,0,0,0,0,1.00757352742049,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0.404406797884062,2.40773294189637,0.702793337176017,0,0,0,0.394584402849391,0,0,18.7032275700324,0,0,0,0,0,0,0,6.65638430463066,0,0,0,1.39781334593624,0,0,0,0,0.484945082442097,0,4.06765333404958,0,0.794858446811959,0.189932387867636,0,0.0801588202515337,0.640358984218058,0,0,0,0,0,0,0,0.407712618220842,0.418411385249333,0,0,2.40168115483916,0,0,0.429765441419957,0,1.39641200636127,0,0,0.399358000997982,0,0,0.201550417460179,2.52209918479682,0,0,0,0,0,0,1.59045937961861,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0.157363764404994,0.105600336519406,0,0,0,0.662091970365432,7.37378759198775,0.542999601753713,0,1.95952416065645,0,0,3.40776043570843,0,0,0,0.517131825446202,0.26446520348538,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,1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| ||
|short_description=p12@PRRX1 | |||
}} | }} |
Latest revision as of 14:16, 18 September 2015
Short description: | p12@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PRRX1_5end |
Coexpression cluster: | C929_myxofibrosarcoma_Fibroblast_normal_Olfactory_mesenchymal_dura_Preadipocyte |
Association with transcript: | -350bp_to_ENST00000239461_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.18e-26 | 76 |
skin fibroblast | 1.31e-15 | 23 |
multi fate stem cell | 8.44e-15 | 427 |
somatic stem cell | 4.43e-14 | 433 |
stem cell | 3.71e-13 | 441 |
preadipocyte | 4.84e-12 | 12 |
mesenchymal cell | 1.27e-08 | 354 |
muscle precursor cell | 1.42e-08 | 58 |
myoblast | 1.42e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.42e-08 | 58 |
connective tissue cell | 2.85e-08 | 361 |
aortic smooth muscle cell | 2.07e-07 | 10 |
vascular associated smooth muscle cell | 2.82e-07 | 32 |
muscle cell | 3.12e-07 | 55 |
motile cell | 6.33e-07 | 386 |