FFCP PHASE1:Hg19::chr1:170632051..170632081,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=strong | |||
|UniProt=G3V4R6 | |||
|association_with_transcript=182bp_to_ENST00000553786_5end | |||
|cluster_id=chr1:170632051..170632081,+ | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_16_at_PRRX1_5end | |||
|id=chr1:170632051..170632081,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.04e-33!180;CL:0000057!2.44e-27!75;CL:0002620!1.08e-14!23;CL:0000680!4.82e-14!57;CL:0000056!4.82e-14!57;CL:0000355!4.82e-14!57;CL:0000187!9.26e-13!54;CL:0000359!8.28e-11!32;CL:0000183!9.21e-11!59;CL:0000048!1.09e-10!430;CL:0000393!2.08e-10!60;CL:0000211!2.08e-10!60;CL:0000723!4.84e-10!436;CL:0000192!5.61e-10!42;CL:0000514!5.61e-10!42;CL:0000034!3.20e-09!444;CL:0002494!1.07e-08!16;CL:0002334!4.33e-08!12;CL:0002556!8.06e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.15e-12;23!CL:0002539;4.75e-11;10!CL:0000359;5.50e-11;32!CL:0000569;1.29e-10;4!CL:0000057;1.97e-10;73!CL:0002551;2.44e-09;6!CL:0002494;2.97e-08;16!CL:0002552;4.76e-08;5!CL:0000192;2.64e-07;43!CL:0002573;3.08e-07;2!CL:0002556;3.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.69e-19,76;CL:0002620,1.18e-11,23;CL:0000359,1.61e-11,32;CL:0002539,3.41e-11,10;CL:0000569,1.02e-10,4;CL:0000011,1.02e-10,4;CL:0000048,1.28e-09,427;CL:0002551,1.84e-09,6;CL:0000723,2.89e-09,433;CL:0000192,6.90e-09,43;CL:0000514,6.90e-09,43;CL:0000034,8.26e-09,441;CL:0002494,2.53e-08,16;CL:0002552,7.85e-08,5;CL:0002573,3.14e-07,2;CL:0000187,3.59e-07,55;CL:0002556,4.29e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000011;1.29e-10;4!CL:0000514;2.64e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.24e-21!83;UBERON:0002329!5.24e-21!83;UBERON:0003077!5.24e-21!83;UBERON:0003059!5.24e-21!83;UBERON:0007282!5.24e-21!83;UBERON:0009618!5.24e-21!83;UBERON:0007285!5.24e-21!83;UBERON:0004290!5.87e-18!70;UBERON:0000486!6.91e-15!82;UBERON:0001134!4.64e-14!61;UBERON:0002036!4.64e-14!61;UBERON:0003082!4.64e-14!61;UBERON:0003102!1.27e-13!95;UBERON:0002385!3.23e-13!63;UBERON:0001015!3.23e-13!63;UBERON:0000383!3.23e-13!63;UBERON:0004872!9.76e-12!84;UBERON:0002199!1.15e-11!45;UBERON:0002416!1.15e-11!45;UBERON:0002097!1.24e-11!40;UBERON:0001637!4.01e-11!42;UBERON:0003509!4.01e-11!42;UBERON:0004572!4.01e-11!42;UBERON:0004573!1.69e-09!33;UBERON:0004571!1.69e-09!33;UBERON:0000948!3.17e-08!24;UBERON:0005498!3.17e-08!24;UBERON:0004140!3.17e-08!24;UBERON:0009881!3.17e-08!24;UBERON:0004141!3.17e-08!24;UBERON:0003084!3.17e-08!24;UBERON:0007005!3.17e-08!24;UBERON:0004139!3.17e-08!24;UBERON:0004291!3.17e-08!24;UBERON:0005256!3.32e-08!143;UBERON:0000475!3.54e-08!365;UBERON:0001981!3.91e-07!60;UBERON:0007500!3.91e-07!60;UBERON:0004537!3.91e-07!60;UBERON:0006965!3.91e-07!60;UBERON:0001758!8.06e-07!6;UBERON:0003672!8.06e-07!6;UBERON:0007100!9.12e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;4.75e-11;10!UBERON:0004695;4.75e-11;10!UBERON:0002111;4.75e-11;10!UBERON:0004178;4.75e-11;10!UBERON:0004573;1.24e-10;33!UBERON:0004571;1.24e-10;33!UBERON:0002067;8.43e-09;9!UBERON:0002199;1.56e-07;46!UBERON:0002416;1.56e-07;46!UBERON:0001758;3.97e-07;6!UBERON:0003672;3.97e-07;6!UBERON:0001135;5.47e-07;15!UBERON:0002097;7.30e-07;41!UBERON:0002119;8.50e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,2.87e-11,33;UBERON:0004571,2.87e-11,33;UBERON:0004237,3.41e-11,10;UBERON:0004695,3.41e-11,10;UBERON:0002111,3.41e-11,10;UBERON:0004178,3.41e-11,10;UBERON:0003102,4.28e-11,99;UBERON:0007524,4.86e-11,73;UBERON:0002199,2.06e-10,46;UBERON:0002416,2.06e-10,46;UBERON:0004872,2.20e-10,83;UBERON:0002329,2.57e-10,71;UBERON:0003059,2.57e-10,71;UBERON:0007282,2.57e-10,71;UBERON:0004290,2.57e-10,71;UBERON:0009618,2.57e-10,71;UBERON:0003077,4.26e-10,72;UBERON:0007285,4.26e-10,72;UBERON:0001637,2.32e-09,42;UBERON:0003509,2.32e-09,42;UBERON:0004572,2.32e-09,42;UBERON:0002097,3.95e-09,41;UBERON:0007503,6.64e-09,78;UBERON:0002067,7.08e-09,9;UBERON:0004016,7.08e-09,9;UBERON:0010083,7.08e-09,9;UBERON:0000486,4.74e-08,83;UBERON:0001758,4.29e-07,6;UBERON:0003672,4.29e-07,6;UBERON:0001135,4.44e-07,15;UBERON:0002119,8.56e-07,4 | |||
|phase1_expression=0.726713517082227,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,4.03395087871065,1.80808358407193,4.38186054232424,1.46379839637152,0,0,0,0,0,0,5.73100543109634,7.88165658719479,4.88006844144811,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0.50133791063589,1.01392563272577,0.795285947051099,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.886413581652058,2.64818361626438,0.573673241497627,0.354668382198357,1.12135520028461,0,1.2333377420858,1.55605517699883,0.404132016209064,0.163461903113459,0,0,0.70296429550139,1.5608003841516,0.570471821544449,2.54062756938062,1.29177948508141,1.13311061057692,1.68540968042698,1.22492502752936,0.61417158655884,1.03325781175765,4.75201142912821,3.4617370098998,0,0,2.02003336744879,2.50237039743928,4.71008996323111,0.877955241761676,0.30648779579902,3.60571341375832,0.453728732640084,1.25572744982203,1.06778694409284,0.423863802319124,0.300091096084402,1.13357782162283,0.515281080091258,0.37223371266318,1.0126579934476,1.94874010322397,0,0.552299391853796,6.30419621593366,0.355009592516614,0.503760491138201,0.339121184620975,0,0,0,0,0,0,0,0,0,0,3.21620469096443,0,2.3218396401599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.22001485746285,1.42198887333556,3.57656445851882,0,0.26593811658487,0,0.771622122786426,0,0,0,0,0.823240336780769,0.325736184293735,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.713715955188647,1.10391690523754,1.40569697991256,0.300946099727719,0,0,0,0.184369168541703,1.47702144595741,0,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.280660094433074,0.512556597022804,1.53512174720011,0.160853921143607,0,3.23840356985577,1.59805552781814,1.23190734020714,2.59627214591811,0.581051892299796,0,0,0,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.976135183992909,0.103041011647722,0,0,2.29706215198469,0,1.6068392984416,0.193341436584244,0,0.15350367472613,0.413509717453592,0.322260734604821,0,0.170453254832202,0.712256285173899,0,0,0,0,1.39453664789186,0,1.3940745403212,6.16067160352178,0,0,2.40921484835096,0.429374660225974,0,0,0,0,0,3.5002357271853,0.78494864019923,0,0,0,0.808729926293264,0,1.68503382495592,0,3.89941583410055,0,0.9554993798559,0.141405431953713,1.13008116620243,2.2054613741845,0,1.31535265576129,0,0.655894752046633,0.202910376962704,0.6196469961995,0.845086807596724,0,0.196498082026242,0.35667105148125,1.06428319221179,0.633322905892992,0.987884678879706,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,10.3391236587298,0.933118762985422,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.384751292518985,0.227884111694002,0,0,0,0.31900115973192,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,1.08194319871046,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,2.52746318513952,0,0,0,0,0,0,0,0.832048038078832,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0.451961481561065,0,0.397429223405979,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0.627617077873999,0,0,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0,0,0,0,0.106787412567695,0,0,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895528817321244,2.57084640831947,1.66441758450784,0.947015026375446,1.0062716070103,0,2.97492088916001,2.26846385644859,4.35224161631785,2.95710299979268,4.46030948058367,18.8917307108714,4.50262574941152,0.829412415681711,0,0.521745061811734,0,0,0.406870733204662,2.54588122883583,0.859284456339908,0,0.398095888698616,0,1.71697852591396,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,2.20927140302209,0,0,0,0,0,0,0,8.07784696386395,0,0,1.59002175326709,0,0,2.1160556621441,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0.198916222116275,0.752103283492572,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,2.11045493231545,0,0,0.336283722218824,0,0.227662191351298,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0.6828739083758,0,0,1.30165200803622,1.19298766662821,0,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0.971421986118279,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,69.8588679915253,0,0,0,0,0,0,0,0,0.436350690340377,0,0.743990036333503,1.84870251452567,0,0,0,0,0,0,0,0,0.454672189309436,0.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| |||
|short_description=p16@PRRX1 | |||
}} |
Latest revision as of 14:04, 18 September 2015
Short description: | p16@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_PRRX1_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | 182bp_to_ENST00000553786_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | G3V4R6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.69e-19 | 76 |
skin fibroblast | 1.18e-11 | 23 |
vascular associated smooth muscle cell | 1.61e-11 | 32 |
aortic smooth muscle cell | 3.41e-11 | 10 |
cardiac mesenchymal cell | 1.02e-10 | 4 |
migratory trunk neural crest cell | 1.02e-10 | 4 |
multi fate stem cell | 1.28e-09 | 427 |
fibroblast of dermis | 1.84e-09 | 6 |
somatic stem cell | 2.89e-09 | 433 |
smooth muscle cell | 6.90e-09 | 43 |
smooth muscle myoblast | 6.90e-09 | 43 |
stem cell | 8.26e-09 | 441 |
cardiocyte | 2.53e-08 | 16 |
fibroblast of gingiva | 7.85e-08 | 5 |
Schwann cell | 3.14e-07 | 2 |
muscle cell | 3.59e-07 | 55 |
fibroblast of periodontium | 4.29e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 2.87e-11 | 33 |
systemic arterial system | 2.87e-11 | 33 |
blood vessel smooth muscle | 3.41e-11 | 10 |
arterial system smooth muscle | 3.41e-11 | 10 |
artery smooth muscle tissue | 3.41e-11 | 10 |
aorta smooth muscle tissue | 3.41e-11 | 10 |
surface structure | 4.28e-11 | 99 |
dense mesenchyme tissue | 4.86e-11 | 73 |
integument | 2.06e-10 | 46 |
integumental system | 2.06e-10 | 46 |
splanchnic layer of lateral plate mesoderm | 2.20e-10 | 83 |
somite | 2.57e-10 | 71 |
presomitic mesoderm | 2.57e-10 | 71 |
presumptive segmental plate | 2.57e-10 | 71 |
dermomyotome | 2.57e-10 | 71 |
trunk paraxial mesoderm | 2.57e-10 | 71 |
paraxial mesoderm | 4.26e-10 | 72 |
presumptive paraxial mesoderm | 4.26e-10 | 72 |
artery | 2.32e-09 | 42 |
arterial blood vessel | 2.32e-09 | 42 |
arterial system | 2.32e-09 | 42 |
skin of body | 3.95e-09 | 41 |
epithelial vesicle | 6.64e-09 | 78 |
dermis | 7.08e-09 | 9 |
dermatome | 7.08e-09 | 9 |
future dermis | 7.08e-09 | 9 |
multilaminar epithelium | 4.74e-08 | 83 |
periodontium | 4.29e-07 | 6 |
dentition | 4.29e-07 | 6 |
smooth muscle tissue | 4.44e-07 | 15 |
left ovary | 8.56e-07 | 4 |