FFCP PHASE1:Hg19::chr21:42540033..42540062,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25825 | |EntrezGene=25825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=934 | |HGNC=934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000544566_5end | |association_with_transcript=0bp_to_ENST00000544566_5end | ||
|cluster_id=chr21:42540033..42540062,+ | |||
|coexpression_cluster_id=C4078 | |coexpression_cluster_id=C4078 | ||
|description=CAGE_peak_2_at_BACE2_5end | |description=CAGE_peak_2_at_BACE2_5end | ||
|id=chr21:42540033..42540062,+ | |id=chr21:42540033..42540062,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.58e-21!254;CL:0000222!1.19e-16!119;CL:0000220!1.19e-15!246;CL:0002321!2.45e-15!248;CL:0002139!1.28e-12!24;CL:0000213!2.37e-12!57;CL:0000215!2.37e-12!57;CL:0002078!2.51e-12!44;CL:0000115!4.45e-11!35;CL:0000076!7.70e-09!62;CL:0000071!9.76e-09!18;CL:0002546!9.76e-09!18;CL:0000055!3.28e-08!180;CL:0000075!3.74e-07!27 | |ontology_enrichment_celltype=CL:0000066!1.58e-21!254;CL:0000222!1.19e-16!119;CL:0000220!1.19e-15!246;CL:0002321!2.45e-15!248;CL:0002139!1.28e-12!24;CL:0000213!2.37e-12!57;CL:0000215!2.37e-12!57;CL:0002078!2.51e-12!44;CL:0000115!4.45e-11!35;CL:0000076!7.70e-09!62;CL:0000071!9.76e-09!18;CL:0002546!9.76e-09!18;CL:0000055!3.28e-08!180;CL:0000075!3.74e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002139;4.64e-13;24!CL:0000115;2.62e-10;36!CL:0002078;2.43e-09;45!CL:0000071;4.52e-09;18!CL:0000213;3.60e-08;58!CL:0000215;3.60e-08;58!CL:0000075;3.67e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.40e-22,253;CL:0000222,2.09e-17,121;CL:0002321,8.47e-17,250;CL:0000213,1.63e-13,58;CL:0000215,1.63e-13,58;CL:0002078,1.78e-13,45;CL:0002139,5.41e-13,24;CL:0000115,3.15e-12,36;CL:0000071,5.11e-09,18;CL:0002546,5.11e-09,18;CL:0000076,1.15e-08,63;CL:0000075,2.81e-07,27 | |||
|ontology_enrichment_development_v019=CL:0002546;4.52e-09;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!6.19e-18!79;UBERON:0007798!6.19e-18!79;UBERON:0000055!6.87e-17!69;UBERON:0004872!8.36e-15!84;UBERON:0001981!1.55e-14!60;UBERON:0007500!1.55e-14!60;UBERON:0004537!1.55e-14!60;UBERON:0006965!1.55e-14!60;UBERON:0003914!1.95e-14!118;UBERON:0000477!2.89e-13!286;UBERON:0004535!3.03e-12!110;UBERON:0000119!5.91e-12!312;UBERON:0001009!8.89e-12!113;UBERON:0000483!1.05e-11!309;UBERON:0001637!2.68e-10!42;UBERON:0003509!2.68e-10!42;UBERON:0004572!2.68e-10!42;UBERON:0003104!1.91e-09!238;UBERON:0009142!1.91e-09!238;UBERON:0004111!3.07e-09!241;UBERON:0004573!4.15e-09!33;UBERON:0004571!4.15e-09!33;UBERON:0000481!4.32e-09!347;UBERON:0001986!9.76e-09!18;UBERON:0004638!9.76e-09!18;UBERON:0004852!9.76e-09!18;UBERON:0001048!1.70e-08!168;UBERON:0000468!1.77e-08!659;UBERON:0006914!7.96e-08!25;UBERON:0000490!8.90e-08!138;UBERON:0000063!1.27e-07!97;UBERON:0002100!1.33e-07!216;UBERON:0003103!1.50e-07!69;UBERON:0000487!1.89e-07!22;UBERON:0000064!2.22e-07!219;UBERON:0001737!2.85e-07!9;UBERON:0000467!6.74e-07!625 | |ontology_enrichment_uberon=UBERON:0002049!6.19e-18!79;UBERON:0007798!6.19e-18!79;UBERON:0000055!6.87e-17!69;UBERON:0004872!8.36e-15!84;UBERON:0001981!1.55e-14!60;UBERON:0007500!1.55e-14!60;UBERON:0004537!1.55e-14!60;UBERON:0006965!1.55e-14!60;UBERON:0003914!1.95e-14!118;UBERON:0000477!2.89e-13!286;UBERON:0004535!3.03e-12!110;UBERON:0000119!5.91e-12!312;UBERON:0001009!8.89e-12!113;UBERON:0000483!1.05e-11!309;UBERON:0001637!2.68e-10!42;UBERON:0003509!2.68e-10!42;UBERON:0004572!2.68e-10!42;UBERON:0003104!1.91e-09!238;UBERON:0009142!1.91e-09!238;UBERON:0004111!3.07e-09!241;UBERON:0004573!4.15e-09!33;UBERON:0004571!4.15e-09!33;UBERON:0000481!4.32e-09!347;UBERON:0001986!9.76e-09!18;UBERON:0004638!9.76e-09!18;UBERON:0004852!9.76e-09!18;UBERON:0001048!1.70e-08!168;UBERON:0000468!1.77e-08!659;UBERON:0006914!7.96e-08!25;UBERON:0000490!8.90e-08!138;UBERON:0000063!1.27e-07!97;UBERON:0002100!1.33e-07!216;UBERON:0003103!1.50e-07!69;UBERON:0000487!1.89e-07!22;UBERON:0000064!2.22e-07!219;UBERON:0001737!2.85e-07!9;UBERON:0000467!6.74e-07!625 | ||
|ontology_enrichment_uberon_v019=UBERON:0000055;2.14e-09;65!UBERON:0004638;4.52e-09;18!UBERON:0001986;4.52e-09;18!UBERON:0004852;4.52e-09;18!UBERON:0004573;7.54e-09;33!UBERON:0004571;7.54e-09;33!UBERON:0001637;1.27e-08;42!UBERON:0003509;1.27e-08;42!UBERON:0004572;1.27e-08;42!UBERON:0007500;2.86e-08;56!UBERON:0001981;2.86e-08;56!UBERON:0004537;2.86e-08;56!UBERON:0002049;3.46e-08;75!UBERON:0007798;3.46e-08;75!UBERON:0006914;3.78e-08;25!UBERON:0003914;4.83e-08;74!UBERON:0000487;8.19e-08;22!UBERON:0001737;2.00e-07;9!UBERON:0001557;2.00e-07;9 | |||
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|short_description=p2@BACE2 | |short_description=p2@BACE2 | ||
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Latest revision as of 12:19, 18 September 2015
Short description: | p2@BACE2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BACE2_5end |
Coexpression cluster: | C4078_Mast_Endothelial_Lymphatic_Melanocyte_melanoma_Hep2_Hepatic |
Association with transcript: | 0bp_to_ENST00000544566_5end |
EntrezGene: | BACE2 |
HGNC: | 934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.40e-22 | 253 |
mesodermal cell | 2.09e-17 | 121 |
embryonic cell | 8.47e-17 | 250 |
lining cell | 1.63e-13 | 58 |
barrier cell | 1.63e-13 | 58 |
meso-epithelial cell | 1.78e-13 | 45 |
endothelial cell of vascular tree | 5.41e-13 | 24 |
endothelial cell | 3.15e-12 | 36 |
blood vessel endothelial cell | 5.11e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.11e-09 | 18 |
squamous epithelial cell | 1.15e-08 | 63 |
columnar/cuboidal epithelial cell | 2.81e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.73e-18 | 78 |
vascular system | 1.73e-18 | 78 |
vessel | 1.57e-17 | 68 |
epithelial tube | 3.47e-15 | 117 |
splanchnic layer of lateral plate mesoderm | 4.30e-15 | 83 |
epithelial tube open at both ends | 4.97e-15 | 59 |
blood vessel | 4.97e-15 | 59 |
blood vasculature | 4.97e-15 | 59 |
vascular cord | 4.97e-15 | 59 |
cardiovascular system | 4.10e-12 | 109 |
circulatory system | 1.46e-11 | 112 |
artery | 1.72e-10 | 42 |
arterial blood vessel | 1.72e-10 | 42 |
arterial system | 1.72e-10 | 42 |
cell layer | 1.04e-09 | 309 |
primordium | 1.70e-09 | 160 |
epithelium | 1.75e-09 | 306 |
systemic artery | 2.83e-09 | 33 |
systemic arterial system | 2.83e-09 | 33 |
blood vessel endothelium | 5.11e-09 | 18 |
endothelium | 5.11e-09 | 18 |
cardiovascular system endothelium | 5.11e-09 | 18 |
squamous epithelium | 3.69e-08 | 25 |
compound organ | 6.65e-08 | 68 |
simple squamous epithelium | 8.77e-08 | 22 |
trunk | 1.51e-07 | 199 |
anatomical conduit | 1.97e-07 | 240 |
larynx | 2.13e-07 | 9 |
unilaminar epithelium | 3.92e-07 | 148 |