FFCP PHASE1:Hg19::chr1:51810778..51810793,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22996 | |EntrezGene=22996 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18657 | |HGNC=18657 | ||
|TSSclassifier=strong | |||
|UniProt=F8W961,E9PQX3,Q5SRH9 | |UniProt=F8W961,E9PQX3,Q5SRH9 | ||
|association_with_transcript=0bp_to_ENST00000401051,ENST00000413473,ENST00000527205,NM_001144832,uc010onf.1_5end | |association_with_transcript=0bp_to_ENST00000401051,ENST00000413473,ENST00000527205,NM_001144832,uc010onf.1_5end | ||
|cluster_id=chr1:51810778..51810793,- | |||
|description=CAGE_peak_4_at_TTC39A_5end | |description=CAGE_peak_4_at_TTC39A_5end | ||
|id=chr1:51810778..51810793,- | |id=chr1:51810778..51810793,- | ||
|ontology_enrichment_celltype=CL:0000066!4.16e-11!254;CL:0002076!1.14e-07!43 | |ontology_enrichment_celltype=CL:0000066!4.16e-11!254;CL:0002076!1.14e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000239;7.67e-10;3!CL:1000615;7.67e-10;3!CL:0002306;7.67e-10;3!CL:0000039;1.09e-09;7!CL:0000586;1.09e-09;7!CL:0000167;2.35e-08;1!CL:0000164;2.35e-08;1!CL:0000502;2.35e-08;1!CL:0000172;2.35e-08;1!CL:0000173;2.35e-08;1!CL:0000313;7.59e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,8.58e-10,3;CL:1000615,8.58e-10,3;CL:0002306,8.58e-10,3;CL:0000039,1.10e-09,7;CL:0000586,1.10e-09,7;CL:0000167,2.35e-08,1;CL:0000164,2.35e-08,1;CL:0000502,2.35e-08,1;CL:0000172,2.35e-08,1;CL:0000173,2.35e-08,1;CL:0002351,2.35e-08,1;CL:0000313,5.05e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;2.35e-08;1!UBERON:0008801;3.70e-08;1!UBERON:0005754;3.70e-08;1 | |||
|ontology_enrichment_disease=DOID:305!8.24e-13!106;DOID:0050687!3.61e-10!143;DOID:299!3.56e-08!25 | |ontology_enrichment_disease=DOID:305!8.24e-13!106;DOID:0050687!3.61e-10!143;DOID:299!3.56e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:299;3.12e-09;25!DOID:4430;2.35e-08;1!DOID:5093;5.23e-08;4!DOID:1612;5.23e-08;4!DOID:3111;7.59e-08;1!DOID:2152;7.59e-08;1!DOID:3603;7.59e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.52e-09,25;DOID:4430,2.35e-08,1;DOID:2152,5.05e-08,1;DOID:5093,5.23e-08,4;DOID:1612,5.23e-08,4;DOID:3111,6.63e-08,1;DOID:3603,6.63e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.33e-11!169;UBERON:0000925!2.33e-11!169;UBERON:0006595!2.33e-11!169;UBERON:0001007!2.59e-10!155;UBERON:0001555!2.59e-10!155;UBERON:0007026!2.59e-10!155;UBERON:0005911!2.63e-09!82;UBERON:0000464!6.12e-09!104;UBERON:0000466!9.87e-09!126;UBERON:0000077!1.93e-08!130;UBERON:0004921!2.30e-08!129;UBERON:0004185!2.30e-08!129;UBERON:0005156!1.40e-07!59;UBERON:0000990!1.40e-07!59;UBERON:0002294!1.71e-07!7;UBERON:0001173!1.71e-07!7;UBERON:0004912!1.71e-07!7;UBERON:0003101!1.88e-07!22;UBERON:0000079!1.88e-07!22;UBERON:0000058!3.50e-07!26;UBERON:0001004!9.11e-07!72 | |ontology_enrichment_uberon=UBERON:0004119!2.33e-11!169;UBERON:0000925!2.33e-11!169;UBERON:0006595!2.33e-11!169;UBERON:0001007!2.59e-10!155;UBERON:0001555!2.59e-10!155;UBERON:0007026!2.59e-10!155;UBERON:0005911!2.63e-09!82;UBERON:0000464!6.12e-09!104;UBERON:0000466!9.87e-09!126;UBERON:0000077!1.93e-08!130;UBERON:0004921!2.30e-08!129;UBERON:0004185!2.30e-08!129;UBERON:0005156!1.40e-07!59;UBERON:0000990!1.40e-07!59;UBERON:0002294!1.71e-07!7;UBERON:0001173!1.71e-07!7;UBERON:0004912!1.71e-07!7;UBERON:0003101!1.88e-07!22;UBERON:0000079!1.88e-07!22;UBERON:0000058!3.50e-07!26;UBERON:0001004!9.11e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0006947;4.79e-10;3!UBERON:0004054;4.79e-10;3!UBERON:0006853;7.67e-10;3!UBERON:0007685;7.67e-10;3!UBERON:0004134;7.67e-10;3!UBERON:0001000;3.70e-08;1!UBERON:0001831;3.70e-08;1!UBERON:0000998;3.70e-08;1!UBERON:0006868;3.70e-08;1!UBERON:0005352;3.70e-08;1!UBERON:0001567;3.70e-08;1!UBERON:0002372;7.59e-08;1!UBERON:0000997;7.59e-08;1!UBERON:0004911;7.59e-08;1!UBERON:0002171;7.59e-08;1!UBERON:0005056;7.59e-08;1!UBERON:0001961;7.59e-08;1!UBERON:0001744;7.59e-08;1!UBERON:0006518;7.59e-08;1!UBERON:0008949;7.59e-08;1!UBERON:0004176;7.59e-08;1!UBERON:0000101;7.59e-08;1!UBERON:0001042;7.59e-08;1!UBERON:0002167;7.59e-08;1!UBERON:0001735;7.59e-08;1!UBERON:0005904;9.63e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,4.00e-10,3;UBERON:0004054,4.00e-10,3;UBERON:0006853,8.58e-10,3;UBERON:0007685,8.58e-10,3;UBERON:0004134,8.58e-10,3;UBERON:0000998,3.11e-08,1;UBERON:0006868,3.11e-08,1;UBERON:0001000,3.34e-08,1;UBERON:0005352,3.34e-08,1;UBERON:0001831,4.40e-08,1;UBERON:0001567,4.40e-08,1;UBERON:0008801,4.40e-08,1;UBERON:0004911,5.05e-08,1;UBERON:0002372,7.10e-08,1;UBERON:0001961,7.10e-08,1;UBERON:0001744,7.10e-08,1;UBERON:0001735,7.10e-08,1;UBERON:0000997,7.59e-08,1;UBERON:0005056,7.59e-08,1;UBERON:0005904,8.42e-08,4;UBERON:0002171,9.29e-08,1;UBERON:0006518,9.29e-08,1;UBERON:0008949,9.29e-08,1;UBERON:0000101,9.29e-08,1;UBERON:0002167,9.29e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,1.09288586487763,0.741568885568859,0,0,0,1.66943437013739,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0.132529768321485,0.232387885739037,0.725627385107593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.491953754172454,0,0,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,13.4334747653077,10.3018339451385,0,0,0,0,0,0,0,0.581267877027924,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0.451199612907412,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,1.27438136522519,2.49322802678617,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0.188287601553558,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0.251932747854276,0,0,0,0.269605053441981,1.61119057208048,0,0.197286811273867,0,0,0,0,0,0.7812832832557,0,0.724999575434793,0,0.254253650292766,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0.278847488557207,0.307801034015188,0,18.9062401598209,21.5418346583453,9.88691084490273,0,0,0,0,0,0,0.451191321234361,0.19606253431774,0,0,0,0,0.489698424477443,0.565412285735763,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0.19566461893209,0,2.76209081994573,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,1.37189356380129,0,0.52418000472609,0,0,0,0,0.775912131907355,0,0,0,0,0,0.586654148204409,0.320635281006135,0.85381197895741,0,0.144090417154106,0,0.171594997861965,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0.160753148465019,0,0.415440338029185,0.2249738915515,3.0952078182318,0,0.335434687599266,2.67939404817274,0.944182586429966,0.105600336519406,0,0.383830394638891,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,0,0.747511887973863,0.628817220398664,1.24271716604159,0,0,0,0.638341257770182,0,0,0,0,0.628216385000937,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47918486351039,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.471878893390961,0,0,0,0,0,0,0,2.34454203369928,0,0,0.295712172434091,0,0,0,0,0,2.19303106742873,0.992422356778588,0,0.127762427639595,0,0,0.606965604236632,1.13831095675649,0,0,0,0,0,0.590969204419841,0.667388411352415,0.627944742804112,0,0.280272163313789,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,2.9637093513365,1.8328549483524,0,0,1.67783147696688,0,3.04794812455674,0,0,0,0.971421986118279,0.467878926924211,0,0,0.22589216407792,0,1.66059127923341,0,0.218559560503957,0,0,5.4205605833374,0,0,0,0,0,0,0,0.535661815816973,0.705789743431384,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0.126698501011437,0.407955318967927,0,0,0,0.151557396436479,0.535928260312357,0,0,0.852935927603924,0.714193294391221,0.193766729508018,0.124149428591716,0,0.381882949668989,0.808468755832877,3.26575121845442,0,1.41439311330634,1.36272190246085,0.332660356546013,0,0,0,0,0,0,0,0,0,0.641136984606466 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| ||
|short_description=p4@TTC39A | |short_description=p4@TTC39A | ||
}} | }} |
Latest revision as of 11:44, 18 September 2015
Short description: | p4@TTC39A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TTC39A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000401051, ENST00000413473, ENST00000527205, NM_001144832, uc010onf.1_5end |
EntrezGene: | TTC39A |
HGNC: | 18657 |
UniProt: | F8W961E9PQX3Q5SRH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 8.58e-10 | 3 |
kidney cortex tubule cell | 8.58e-10 | 3 |
epithelial cell of proximal tubule | 8.58e-10 | 3 |
germ line cell | 1.10e-09 | 7 |
germ cell | 1.10e-09 | 7 |
peptide hormone secreting cell | 2.35e-08 | 1 |
enteroendocrine cell | 2.35e-08 | 1 |
type D enteroendocrine cell | 2.35e-08 | 1 |
somatostatin secreting cell | 2.35e-08 | 1 |
pancreatic D cell | 2.35e-08 | 1 |
progenitor cell of endocrine pancreas | 2.35e-08 | 1 |
serous secreting cell | 5.05e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 4.00e-10 | 3 |
internal male genitalia | 4.00e-10 | 3 |
renal cortex tubule | 8.58e-10 | 3 |
region of nephron tubule | 8.58e-10 | 3 |
proximal tubule | 8.58e-10 | 3 |
seminal vesicle | 3.11e-08 | 1 |
seminal fluid secreting gland | 3.11e-08 | 1 |
vas deferens | 3.34e-08 | 1 |
spermatic cord | 3.34e-08 | 1 |
parotid gland | 4.40e-08 | 1 |
cheek | 4.40e-08 | 1 |
parotid gland primordium | 4.40e-08 | 1 |
epithelium of female gonad | 5.05e-08 | 1 |
tonsil | 7.10e-08 | 1 |
mucosa-associated lymphoid tissue | 7.10e-08 | 1 |
lymphoid tissue | 7.10e-08 | 1 |
tonsillar ring | 7.10e-08 | 1 |
mammalian vulva | 7.59e-08 | 1 |
external female genitalia | 7.59e-08 | 1 |
duct of male reproductive system | 8.42e-08 | 4 |
lower lobe of right lung | 9.29e-08 | 1 |
right lung lobe | 9.29e-08 | 1 |
lower lobe of lung | 9.29e-08 | 1 |
lobe of lung | 9.29e-08 | 1 |
right lung | 9.29e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.52e-09 | 25 |
somatostatinoma | 2.35e-08 | 1 |
ovary epithelial cancer | 5.05e-08 | 1 |
thoracic cancer | 5.23e-08 | 4 |
breast cancer | 5.23e-08 | 4 |
cystadenocarcinoma | 6.63e-08 | 1 |
mucinous cystadenocarcinoma | 6.63e-08 | 1 |