FFCP PHASE1:Hg19::chr5:65440118..65440192,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=140890 | |EntrezGene=140890 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17882 | |HGNC=17882 | ||
|TSSclassifier=strong | |||
|UniProt=E5RK30,E5RFV3,B3KRJ9 | |UniProt=E5RK30,E5RFV3,B3KRJ9 | ||
|association_with_transcript=0bp_to_ENST00000520058,ENST00000520953,ENST00000522912,ENST00000524111,ENST00000537482_5end | |association_with_transcript=0bp_to_ENST00000520058,ENST00000520953,ENST00000522912,ENST00000524111,ENST00000537482_5end | ||
|cluster_id=chr5:65440118..65440192,+ | |||
|description=CAGE_peak_1_at_SREK1_5end | |description=CAGE_peak_1_at_SREK1_5end | ||
|id=chr5:65440118..65440192,+ | |id=chr5:65440118..65440192,+ | ||
|ontology_enrichment_celltype=CL:0000037!8.58e-10!172;CL:0000566!8.58e-10!172;CL:0000988!2.63e-08!182;CL:0002032!2.65e-08!165;CL:0000837!2.65e-08!165;CL:0000763!1.31e-07!112;CL:0000049!1.31e-07!112 | |ontology_enrichment_celltype=CL:0000037!8.58e-10!172;CL:0000566!8.58e-10!172;CL:0000988!2.63e-08!182;CL:0002032!2.65e-08!165;CL:0000837!2.65e-08!165;CL:0000763!1.31e-07!112;CL:0000049!1.31e-07!112 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.16e-09,168;CL:0000988,1.72e-08,177;CL:0002032,3.57e-08,161;CL:0000837,3.57e-08,161;CL:0000763,1.66e-07,108;CL:0000049,1.66e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.96e-11!235;DOID:14566!5.59e-10!239;DOID:0050686!3.18e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.96e-11,235;DOID:14566,5.59e-10,239;DOID:0050686,3.18e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000073!5.20e-12!94;UBERON:0001016!5.20e-12!94;UBERON:0000955!3.81e-11!69;UBERON:0006238!3.81e-11!69;UBERON:0001049!4.69e-11!57;UBERON:0005068!4.69e-11!57;UBERON:0006241!4.69e-11!57;UBERON:0007135!4.69e-11!57;UBERON:0001017!9.26e-11!82;UBERON:0003080!1.72e-10!42;UBERON:0002616!2.69e-10!59;UBERON:0002780!4.47e-10!41;UBERON:0001890!4.47e-10!41;UBERON:0006240!4.47e-10!41;UBERON:0005743!1.00e-09!86;UBERON:0002020!2.40e-08!34;UBERON:0003528!2.40e-08!34;UBERON:0002346!3.79e-08!90;UBERON:0001869!5.70e-08!32;UBERON:0001893!8.10e-08!34;UBERON:0002791!9.43e-08!33;UBERON:0003075!6.13e-07!86;UBERON:0007284!6.13e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.10e-07;41!UBERON:0001890;1.10e-07;41!UBERON:0003528;1.86e-07;34!UBERON:0002020;1.86e-07;34!UBERON:0002791;2.07e-07;32!UBERON:0001869;2.26e-07;32!UBERON:0001893;9.93e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.14e-13,89;UBERON:0000955,9.09e-11,68;UBERON:0006238,9.09e-11,68;UBERON:0001049,1.16e-10,56;UBERON:0005068,1.16e-10,56;UBERON:0006241,1.16e-10,56;UBERON:0007135,1.16e-10,56;UBERON:0001017,2.10e-10,81;UBERON:0000073,2.74e-10,53;UBERON:0002616,2.74e-10,53;UBERON:0002780,4.47e-10,41;UBERON:0001890,4.47e-10,41;UBERON:0003080,4.47e-10,41;UBERON:0006240,4.47e-10,41;UBERON:0003528,2.40e-08,34;UBERON:0002020,2.40e-08,34;UBERON:0001869,5.70e-08,32;UBERON:0002346,6.09e-08,86;UBERON:0002791,6.48e-08,32;UBERON:0001893,8.10e-08,34;UBERON:0003075,9.88e-07,82;UBERON:0007284,9.88e-07,82 | |||
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| ||
|short_description=p1@SREK1 | |short_description=p1@SREK1 | ||
}} | }} |
Latest revision as of 10:51, 18 September 2015
Short description: | p1@SREK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SREK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000520058, ENST00000520953, ENST00000522912, ENST00000524111, ENST00000537482_5end |
EntrezGene: | SREK1 |
HGNC: | 17882 |
UniProt: | E5RK30E5RFV3B3KRJ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.16e-09 | 168 |
hematopoietic cell | 1.72e-08 | 177 |
hematopoietic oligopotent progenitor cell | 3.57e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.57e-08 | 161 |
myeloid cell | 1.66e-07 | 108 |
common myeloid progenitor | 1.66e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.14e-13 | 89 |
brain | 9.09e-11 | 68 |
future brain | 9.09e-11 | 68 |
neural tube | 1.16e-10 | 56 |
neural rod | 1.16e-10 | 56 |
future spinal cord | 1.16e-10 | 56 |
neural keel | 1.16e-10 | 56 |
central nervous system | 2.10e-10 | 81 |
regional part of nervous system | 2.74e-10 | 53 |
regional part of brain | 2.74e-10 | 53 |
regional part of forebrain | 4.47e-10 | 41 |
forebrain | 4.47e-10 | 41 |
anterior neural tube | 4.47e-10 | 41 |
future forebrain | 4.47e-10 | 41 |
brain grey matter | 2.40e-08 | 34 |
gray matter | 2.40e-08 | 34 |
cerebral hemisphere | 5.70e-08 | 32 |
neurectoderm | 6.09e-08 | 86 |
regional part of telencephalon | 6.48e-08 | 32 |
telencephalon | 8.10e-08 | 34 |
neural plate | 9.88e-07 | 82 |
presumptive neural plate | 9.88e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.96e-11 | 235 |
disease of cellular proliferation | 5.59e-10 | 239 |
organ system cancer | 3.18e-07 | 137 |