FFCP PHASE1:Hg19::chr1:165325449..165325465,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4009 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6653 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=9bp_to_uc001gcz.1_5end | |||
|cluster_id=chr1:165325449..165325465,- | |||
|description=CAGE_peak_3_at_LMX1A_5end | |||
|id=chr1:165325449..165325465,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;3.11e-21;2!CL:0000333;3.49e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,3.11e-21,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;8.13e-17;10!DOID:4362;2.53e-09;5!DOID:3095;3.27e-08;22!DOID:2994;3.27e-08;22!DOID:169;7.25e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.13e-17,10;DOID:4362,2.53e-09,5;DOID:3095,3.27e-08,22;DOID:2994,3.27e-08,22;DOID:169,7.25e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001896!3.77e-17!3;UBERON:0005290!3.77e-17!3;UBERON:0010096!3.77e-17!3;UBERON:0004733!1.12e-15!12;UBERON:0002028!1.12e-15!12;UBERON:0007277!1.12e-15!12;UBERON:0004732!1.99e-14!13;UBERON:0003076!2.00e-12!15;UBERON:0003057!2.00e-12!15;UBERON:0002616!3.08e-12!59;UBERON:0002298!6.51e-11!8;UBERON:0001049!8.19e-11!57;UBERON:0005068!8.19e-11!57;UBERON:0006241!8.19e-11!57;UBERON:0007135!8.19e-11!57;UBERON:0002346!5.47e-10!90;UBERON:0000955!6.17e-10!69;UBERON:0006238!6.17e-10!69;UBERON:0007023!1.91e-09!115;UBERON:0001017!2.19e-09!82;UBERON:0000073!4.21e-09!94;UBERON:0001016!4.21e-09!94;UBERON:0005743!7.85e-09!86;UBERON:0003075!1.20e-07!86;UBERON:0007284!1.20e-07!86;UBERON:0001894!2.12e-07!7;UBERON:0006222!2.12e-07!7;UBERON:0000924!8.00e-07!173;UBERON:0006601!8.00e-07!173;UBERON:0007029!8.49e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;3.11e-21;2!UBERON:0004801;3.11e-21;2!UBERON:0002346;2.80e-11;4!UBERON:0000923;2.80e-11;4!UBERON:0010316;2.80e-11;4!UBERON:0005291;2.80e-11;4!UBERON:0002050;2.74e-09;5!UBERON:0005423;2.74e-09;5!UBERON:0000013;3.49e-09;5!UBERON:0002410;3.49e-09;5!UBERON:0000002;5.54e-08;6!UBERON:0001560;5.54e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,3.11e-21,2;UBERON:0004801,3.11e-21,2;UBERON:0000013,3.49e-09,5;UBERON:0002410,3.49e-09,5;UBERON:0000002,5.54e-08,6;UBERON:0001560,5.54e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28285671352269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0.694238953340524,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,2.93774963014692,0,0,0,0,0,0,0,0,0,2.57392496792947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0.573409195690071,0.776503360757966,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72992536041486,0,0,0.637724760305049,3.84200869202907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0.336283722218824,0,0.682986574053893,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.946629373159108,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p3@LMX1A | |||
}} |
Latest revision as of 09:40, 18 September 2015
Short description: | p3@LMX1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LMX1A_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_uc001gcz.1_5end |
EntrezGene: | LMX1A |
HGNC: | 6653 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 3.11e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 3.11e-21 | 2 |
cervix epithelium | 3.11e-21 | 2 |
sympathetic nervous system | 3.49e-09 | 5 |
autonomic nervous system | 3.49e-09 | 5 |
uterine cervix | 5.54e-08 | 6 |
neck of organ | 5.54e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.13e-17 | 10 |
cervical cancer | 2.53e-09 | 5 |
germ cell and embryonal cancer | 3.27e-08 | 22 |
germ cell cancer | 3.27e-08 | 22 |
neuroendocrine tumor | 7.25e-08 | 6 |