FFCP PHASE1:Hg19::chr15:59908820..59908829,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |EntrezGene=9245 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |HGNC=4205 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=90bp_to_ENST00000560210_5end | |association_with_transcript=90bp_to_ENST00000560210_5end | ||
|cluster_id=chr15:59908820..59908829,+ | |||
|coexpression_cluster_id=C184 | |coexpression_cluster_id=C184 | ||
|description=CAGE_peak_20_at_GCNT3_5end | |description=CAGE_peak_20_at_GCNT3_5end | ||
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|ontology_enrichment_celltype=CL:0002149!2.68e-08!6;CL:0002255!2.68e-08!6;CL:0000239!8.74e-08!3;CL:1000615!8.74e-08!3;CL:0002306!8.74e-08!3;CL:0000167!9.91e-07!1;CL:0000164!9.91e-07!1;CL:0000502!9.91e-07!1;CL:0000172!9.91e-07!1;CL:0000173!9.91e-07!1;CL:0002351!9.91e-07!1 | |ontology_enrichment_celltype=CL:0002149!2.68e-08!6;CL:0002255!2.68e-08!6;CL:0000239!8.74e-08!3;CL:1000615!8.74e-08!3;CL:0002306!8.74e-08!3;CL:0000167!9.91e-07!1;CL:0000164!9.91e-07!1;CL:0000502!9.91e-07!1;CL:0000172!9.91e-07!1;CL:0000173!9.91e-07!1;CL:0002351!9.91e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000167;1.84e-34;1!CL:0000164;1.84e-34;1!CL:0000502;1.84e-34;1!CL:0000172;1.84e-34;1!CL:0000173;1.84e-34;1!CL:0000239;2.74e-12;3!CL:1000615;2.74e-12;3!CL:0002306;2.74e-12;3!CL:0002149;8.72e-07;6!CL:0002255;8.72e-07;6 | |ontology_enrichment_celltype_v019=CL:0000167;1.84e-34;1!CL:0000164;1.84e-34;1!CL:0000502;1.84e-34;1!CL:0000172;1.84e-34;1!CL:0000173;1.84e-34;1!CL:0000239;2.74e-12;3!CL:1000615;2.74e-12;3!CL:0002306;2.74e-12;3!CL:0002149;8.72e-07;6!CL:0002255;8.72e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000167,1.84e-34,1;CL:0000164,1.84e-34,1;CL:0000502,1.84e-34,1;CL:0000172,1.84e-34,1;CL:0000173,1.84e-34,1;CL:0002351,1.84e-34,1;CL:0000239,2.31e-12,3;CL:1000615,2.31e-12,3;CL:0002306,2.31e-12,3;CL:0002149,8.97e-07,6;CL:0002255,8.97e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002351;1.84e-34;1!UBERON:0008801;5.97e-34;1 | |ontology_enrichment_development_v019=CL:0002351;1.84e-34;1!UBERON:0008801;5.97e-34;1 | ||
|ontology_enrichment_disease=DOID:3001!2.68e-08!6;DOID:4430!9.91e-07!1 | |ontology_enrichment_disease=DOID:3001!2.68e-08!6;DOID:4430!9.91e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:4430;1.84e-34;1!DOID:169;7.17e-07;6!DOID:3001;8.72e-07;6 | |ontology_enrichment_disease_v019=DOID:4430;1.84e-34;1!DOID:169;7.17e-07;6!DOID:3001;8.72e-07;6 | ||
|ontology_enrichment_disease_v019_2=DOID:4430,1.84e-34,1;DOID:169,7.17e-07,6;DOID:3001,8.97e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0003127!1.47e-11!2;UBERON:0000995!1.29e-10!21;UBERON:0005795!4.31e-10!22;UBERON:0003975!4.31e-10!22;UBERON:0004921!1.79e-09!129;UBERON:0004185!1.79e-09!129;UBERON:0004119!4.47e-09!169;UBERON:0000925!4.47e-09!169;UBERON:0006595!4.47e-09!169;UBERON:0004175!9.03e-09!25;UBERON:0007023!1.69e-08!115;UBERON:0001007!3.45e-08!155;UBERON:0001555!3.45e-08!155;UBERON:0007026!3.45e-08!155;UBERON:0006853!8.74e-08!3;UBERON:0007685!8.74e-08!3;UBERON:0004134!8.74e-08!3;UBERON:0000077!2.77e-07!130;UBERON:0003134!3.10e-07!37;UBERON:0000474!3.10e-07!37;UBERON:0003126!4.74e-07!7;UBERON:0001005!4.74e-07!7 | |ontology_enrichment_uberon=UBERON:0003127!1.47e-11!2;UBERON:0000995!1.29e-10!21;UBERON:0005795!4.31e-10!22;UBERON:0003975!4.31e-10!22;UBERON:0004921!1.79e-09!129;UBERON:0004185!1.79e-09!129;UBERON:0004119!4.47e-09!169;UBERON:0000925!4.47e-09!169;UBERON:0006595!4.47e-09!169;UBERON:0004175!9.03e-09!25;UBERON:0007023!1.69e-08!115;UBERON:0001007!3.45e-08!155;UBERON:0001555!3.45e-08!155;UBERON:0007026!3.45e-08!155;UBERON:0006853!8.74e-08!3;UBERON:0007685!8.74e-08!3;UBERON:0004134!8.74e-08!3;UBERON:0000077!2.77e-07!130;UBERON:0003134!3.10e-07!37;UBERON:0000474!3.10e-07!37;UBERON:0003126!4.74e-07!7;UBERON:0001005!4.74e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001831;5.97e-34;1!UBERON:0001567;5.97e-34;1!UBERON:0003127;9.86e-18;2!UBERON:0001829;9.86e-18;2!UBERON:0004089;9.86e-18;2!UBERON:0006853;2.74e-12;3!UBERON:0007685;2.74e-12;3!UBERON:0004134;2.74e-12;3!UBERON:0001044;8.72e-07;6!UBERON:0003293;8.72e-07;6!UBERON:0003294;8.72e-07;6!UBERON:0010047;8.72e-07;6!UBERON:0003408;8.72e-07;6!UBERON:0000167;8.72e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0001831;5.97e-34;1!UBERON:0001567;5.97e-34;1!UBERON:0003127;9.86e-18;2!UBERON:0001829;9.86e-18;2!UBERON:0004089;9.86e-18;2!UBERON:0006853;2.74e-12;3!UBERON:0007685;2.74e-12;3!UBERON:0004134;2.74e-12;3!UBERON:0001044;8.72e-07;6!UBERON:0003293;8.72e-07;6!UBERON:0003294;8.72e-07;6!UBERON:0010047;8.72e-07;6!UBERON:0003408;8.72e-07;6!UBERON:0000167;8.72e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001831,5.05e-34,1;UBERON:0001567,5.05e-34,1;UBERON:0008801,5.05e-34,1;UBERON:0001829,9.07e-18,2;UBERON:0004089,9.07e-18,2;UBERON:0003127,1.27e-17,2;UBERON:0006853,2.31e-12,3;UBERON:0007685,2.31e-12,3;UBERON:0004134,2.31e-12,3;UBERON:0001044,8.48e-07,6;UBERON:0003293,8.48e-07,6;UBERON:0003294,8.48e-07,6;UBERON:0010047,8.48e-07,6;UBERON:0000167,8.48e-07,6 | |||
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|short_description=p20@GCNT3 | |short_description=p20@GCNT3 | ||
}} | }} |
Latest revision as of 09:11, 18 September 2015
Short description: | p20@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_GCNT3_5end |
Coexpression cluster: | C184_somatostatinoma_smallcell_nonsmall_small_gastrointestinal_pineal_thyroid |
Association with transcript: | 90bp_to_ENST00000560210_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 1.84e-34 | 1 |
enteroendocrine cell | 1.84e-34 | 1 |
type D enteroendocrine cell | 1.84e-34 | 1 |
somatostatin secreting cell | 1.84e-34 | 1 |
pancreatic D cell | 1.84e-34 | 1 |
progenitor cell of endocrine pancreas | 1.84e-34 | 1 |
brush border epithelial cell | 2.31e-12 | 3 |
kidney cortex tubule cell | 2.31e-12 | 3 |
epithelial cell of proximal tubule | 2.31e-12 | 3 |
epithelial cell of uterus | 8.97e-07 | 6 |
stromal cell of endometrium | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
parotid gland | 5.05e-34 | 1 |
cheek | 5.05e-34 | 1 |
parotid gland primordium | 5.05e-34 | 1 |
major salivary gland | 9.07e-18 | 2 |
midface | 9.07e-18 | 2 |
open tracheal system trachea | 1.27e-17 | 2 |
renal cortex tubule | 2.31e-12 | 3 |
region of nephron tubule | 2.31e-12 | 3 |
proximal tubule | 2.31e-12 | 3 |
saliva-secreting gland | 8.48e-07 | 6 |
gland of oral region | 8.48e-07 | 6 |
gland of foregut | 8.48e-07 | 6 |
oral gland | 8.48e-07 | 6 |
oral cavity | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.84e-34 | 1 |
neuroendocrine tumor | 7.17e-07 | 6 |
female reproductive endometrioid cancer | 8.97e-07 | 6 |