FFCP PHASE1:Hg19::chr1:164528866..164528877,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5087 | |EntrezGene=5087 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8632 | |HGNC=8632 | ||
|TSSclassifier=strong | |||
|UniProt=P40424 | |UniProt=P40424 | ||
|association_with_transcript=0bp_to_ENST00000420696_5end | |association_with_transcript=0bp_to_ENST00000420696_5end | ||
|cluster_id=chr1:164528866..164528877,+ | |||
|description=CAGE_peak_12_at_PBX1_5end | |description=CAGE_peak_12_at_PBX1_5end | ||
|id=chr1:164528866..164528877,+ | |id=chr1:164528866..164528877,+ | ||
|ontology_enrichment_celltype=CL:0000133!5.78e-07!59 | |ontology_enrichment_celltype=CL:0000133!5.78e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.73e-10;5!CL:0002319;3.92e-10;25!CL:0002321;1.81e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.52e-10,5;CL:0002319,2.53e-10,25;CL:0000133,1.27e-09,59;CL:0000047,6.14e-08,8;CL:0000221,9.55e-08,72;CL:0002605,8.84e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!1.34e-08!22;DOID:2994!1.34e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.42e-09;22!DOID:2994;6.42e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.62e-09,22;DOID:2994,3.62e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0002346!4.20e-17!90;UBERON:0001017!1.48e-16!82;UBERON:0000073!2.49e-16!94;UBERON:0001016!2.49e-16!94;UBERON:0005743!2.70e-16!86;UBERON:0003075!1.01e-15!86;UBERON:0007284!1.01e-15!86;UBERON:0003056!3.85e-15!61;UBERON:0000924!6.84e-15!173;UBERON:0006601!6.84e-15!173;UBERON:0004121!9.87e-14!169;UBERON:0000955!1.31e-13!69;UBERON:0006238!1.31e-13!69;UBERON:0000153!5.18e-13!129;UBERON:0007811!5.18e-13!129;UBERON:0000033!5.55e-13!123;UBERON:0001049!5.59e-13!57;UBERON:0005068!5.59e-13!57;UBERON:0006241!5.59e-13!57;UBERON:0007135!5.59e-13!57;UBERON:0000475!2.69e-12!365;UBERON:0000481!1.48e-11!347;UBERON:0002616!2.77e-11!59;UBERON:0001893!3.85e-11!34;UBERON:0003080!4.36e-11!42;UBERON:0001869!7.43e-11!32;UBERON:0002780!9.25e-11!41;UBERON:0001890!9.25e-11!41;UBERON:0006240!9.25e-11!41;UBERON:0002791!1.20e-10!33;UBERON:0002020!1.03e-09!34;UBERON:0003528!1.03e-09!34;UBERON:0000956!3.58e-09!25;UBERON:0000203!3.58e-09!25;UBERON:0000064!1.52e-08!219;UBERON:0000483!4.03e-08!309;UBERON:0000468!7.02e-08!659;UBERON:0000119!8.02e-08!312;UBERON:0002619!2.22e-07!22;UBERON:0000922!4.01e-07!612;UBERON:0007023!4.22e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.57e-09;49!UBERON:0001869;2.34e-08;32!UBERON:0001893;4.61e-08;34!UBERON:0002791;1.29e-07;32!UBERON:0003528;6.65e-07;34!UBERON:0002020;6.65e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.15e-11,89;UBERON:0001017,3.29e-11,81;UBERON:0002346,2.07e-10,86;UBERON:0003056,3.18e-10,61;UBERON:0004121,1.18e-09,171;UBERON:0000924,1.18e-09,171;UBERON:0006601,1.18e-09,171;UBERON:0003075,2.87e-09,82;UBERON:0007284,2.87e-09,82;UBERON:0001893,3.23e-09,34;UBERON:0001869,9.11e-09,32;UBERON:0001049,2.60e-08,56;UBERON:0005068,2.60e-08,56;UBERON:0006241,2.60e-08,56;UBERON:0007135,2.60e-08,56;UBERON:0002780,4.22e-08,41;UBERON:0001890,4.22e-08,41;UBERON:0003080,4.22e-08,41;UBERON:0006240,4.22e-08,41;UBERON:0011216,4.54e-08,223;UBERON:0010371,4.55e-08,104;UBERON:0002791,1.43e-07,32;UBERON:0000073,5.17e-07,53;UBERON:0002616,5.17e-07,53;UBERON:0003528,5.94e-07,34;UBERON:0002020,5.94e-07,34 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0.655324116390517,0.263766978228454,1.48519623552056,0,0.672325146451775,0,0,0,0.61560529038394,0,1.25381888591235,3.72106783270374,1.50561867580173,2.00868223351684,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.02290049474824,0.722878304769133,0,0.579386075843295,0.795285947051099,0,3.02511414925017,0.443458794925128,0.87834785693126,0.196468613246569,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.446498641420399,0.673588117878509,0.563057402416611,0,0,0,0,0,0,0,0.379891534993739,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0.933633106199299,0.134710672069688,0.326923806226917,0,0.576175924479999,1.64025002283658,0.312160076830321,0,0.149448680551801,0,0.161872944368132,0.280901613404497,0.816616685019573,0.859840221182376,0.723280468230358,0,0,0,0.718618141816238,1.0100166837244,2.00189631795143,0,0,0.30648779579902,0,0,0,0.640672166455702,0.211931901159562,0,0,0.257640540045629,0.37223371266318,0.337552664482532,0.0974370051611986,0,0.460249493211497,0.80823028409406,0,0.10075209822764,0,0,0,0,1.70763188581434,2.12047629314376,2.67246068599892,2.38420426535352,3.28017106138317,2.18986415445498,0,0,0,0.464367928031979,1.44375896333917,0.236613600079688,0.168584690078102,0.241011029883482,0.882351781859152,0,0.474541238222193,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,1.02940686179115,0,0,0,0.277765335475589,0.977424915930974,2.07986957055916,1.44331342025273,1.39116485970092,0.352226082707465,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.528290604079356,0.207328115540772,0.576479813667846,0.37872730027914,0.126995788584338,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0.1466765716419,0.258543431515556,0,0,0.531876233169741,0,0,1.41849132023278,0,0.857867961948885,0,0,0.325736184293735,1.06617584622764,1.58390374586686,0.301439377059586,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,1.02738161275192,0.537182889719687,0,0,0,0,2.03275699377971,1.30139853857622,0,1.00509759200609,0,0,0,0,2.57652132610194,0,0.271265023699736,0.415941723061614,0.356857977594324,0.630809660135739,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,1.04260337361699,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.841980283299221,0,0,0.482561763430822,0,0.462629081407967,0.355123450626254,0.246381468041427,0.519254429183621,0.116210378459959,0.846016147141356,0,0,0.68888668898764,0.364182336013434,0.262248829918848,0,0.0770153371044148,0.784349769176855,0,0.211103257785751,1.13733384070897,0.170093705276516,0.215915916102139,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0.309123034943167,0.0915694648183434,0,0,0,1.6068392984416,0.48335359146061,0.154048617114644,0.460511024178389,0,2.14840489736547,0.435050081742686,0.340906509664404,0.445160178233687,0,0,0.127612712494584,0,0,0,0,0.308033580176089,1.06461206063404,1.73986598415015,0,0,0.372158369359667,0,0.38126038784765,0,0.855877976067841,0.318203247925937,0,1.2591072030832,3.29444435683266,0.589062011728432,0.404364963146632,0,0,0.975267478179181,0.487426979262569,0,0.136499911407986,1.1312434556297,0,0.551365343546124,0,0,0.578775534266688,1.31178950409327,0.202910376962704,0,0,0.286822704408103,0.491245205065606,0.35667105148125,0,1.26664581178598,0.658589785919804,1.13841952129715,1.74967360122491,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.33307196799782,1.4098700508785,0,0.439524537815682,0,0,0,0.23874448473769,0.296964680832639,0,0,0.562677665642051,0.445234820091624,0,1.90012867315194,0.796991953004279,0.828851746593443,0,0.20453736500431,0,0,0.0898683511473268,0.716084698702437,0,1.08507746200627,0,0,0.969332746095218,0.649376687132959,0,1.04171104434093,0.61221999997337,0.724999575434793,0.341380344856499,0,0.709163045303809,0.344743373241465,0.874813840149763,2.2571249341328,0,1.20596438625408,0,0.552896299656123,0.886642856860642,0,0.544692317594951,0.557694977114413,2.23155749661011,0.455768223388005,0,0,0.869178975376065,0,0,0,0,0,0.831058409500782,0,0,0,0,0,0,0,0.282706142867882,1.29833183845255,0,0.530745387020035,2.4441205797345,0,0,0,1.07841812769083,0,1.40558667435203,0,0.19566461893209,0,0.789168805698781,1.20990716048664,0.61214552326098,0.821425535170343,0.450970258243478,0.72581733978073,0.664653872707185,0.330991955875499,0,1.19472429772959,1.13843818411917,0,0,0,0.0870592065804026,0.17472666824203,0.51595809741485,0.580537987734511,0.365446585430928,0.492692742319255,0.387956065953678,0,0,0,0,1.0762835312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| ||
|short_description=p12@PBX1 | |short_description=p12@PBX1 | ||
}} | }} |
Latest revision as of 09:11, 18 September 2015
Short description: | p12@PBX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PBX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000420696_5end |
EntrezGene: | PBX1 |
HGNC: | 8632 |
UniProt: | P40424 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.52e-10 | 5 |
neural cell | 2.53e-10 | 25 |
neurectodermal cell | 1.27e-09 | 59 |
neuronal stem cell | 6.14e-08 | 8 |
ectodermal cell | 9.55e-08 | 72 |
astrocyte of the cerebral cortex | 8.84e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.15e-11 | 89 |
central nervous system | 3.29e-11 | 81 |
neurectoderm | 2.07e-10 | 86 |
pre-chordal neural plate | 3.18e-10 | 61 |
ectoderm-derived structure | 1.18e-09 | 171 |
ectoderm | 1.18e-09 | 171 |
presumptive ectoderm | 1.18e-09 | 171 |
neural plate | 2.87e-09 | 82 |
presumptive neural plate | 2.87e-09 | 82 |
telencephalon | 3.23e-09 | 34 |
cerebral hemisphere | 9.11e-09 | 32 |
neural tube | 2.60e-08 | 56 |
neural rod | 2.60e-08 | 56 |
future spinal cord | 2.60e-08 | 56 |
neural keel | 2.60e-08 | 56 |
regional part of forebrain | 4.22e-08 | 41 |
forebrain | 4.22e-08 | 41 |
anterior neural tube | 4.22e-08 | 41 |
future forebrain | 4.22e-08 | 41 |
organ system subdivision | 4.54e-08 | 223 |
ecto-epithelium | 4.55e-08 | 104 |
regional part of telencephalon | 1.43e-07 | 32 |
regional part of nervous system | 5.17e-07 | 53 |
regional part of brain | 5.17e-07 | 53 |
brain grey matter | 5.94e-07 | 34 |
gray matter | 5.94e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.62e-09 | 22 |
germ cell cancer | 3.62e-09 | 22 |