FFCP PHASE1:Hg19::chr19:42806728..42806795,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:42806728..42806795,- to FFCP PHASE1:Hg19::chr19:42806728..42806795,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5050 | |EntrezGene=5050 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8576 | |HGNC=8576 | ||
|TSSclassifier=strong | |||
|UniProt=Q15102 | |UniProt=Q15102 | ||
|association_with_transcript=0bp_to_ENST00000262890,NM_002573,uc002otg.2_5end | |||
|cluster_id=chr19:42806728..42806795,- | |||
|coexpression_cluster_id=C1824 | |||
|description=CAGE_peak_1_at_PAFAH1B3_5end | |||
|id=chr19:42806728..42806795,- | |||
|ontology_enrichment_celltype=CL:0000066!1.19e-23!254;CL:0002321!9.83e-19!248;CL:0000220!6.77e-18!246;CL:0000221!5.48e-12!71;CL:0000133!5.69e-11!59;CL:0002319!2.60e-09!25;CL:0000333!3.01e-09!41;CL:0000012!8.05e-08!682;CL:0000548!1.51e-07!679;CL:0000004!1.51e-07!679;CL:0000255!1.51e-07!679;CL:0000003!8.02e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.26e-09;25!CL:1000449;2.22e-07;15!CL:1000497;4.73e-07;17!CL:0002518;4.73e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.00e-24,253;CL:0002321,1.97e-18,250;CL:0000221,1.19e-11,72;CL:0000133,5.57e-11,59;CL:0002319,2.55e-09,25;CL:0000333,2.96e-09,41;CL:1000449,1.99e-07,15;CL:1000497,4.49e-07,17;CL:0002518,4.49e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!7.26e-18!235;DOID:14566!4.07e-17!239;DOID:0050687!3.57e-11!143;DOID:0050686!7.47e-11!137;DOID:305!1.26e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.57e-18,235;DOID:14566,3.70e-17,239;DOID:0050687,3.52e-11,143;DOID:0050686,7.37e-11,137;DOID:305,1.17e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000119!7.32e-08!312;UBERON:0000483!1.70e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;7.44e-08;30!UBERON:0001008;7.44e-08;30!UBERON:0006555;2.22e-07;15!UBERON:0004819;2.22e-07;15!UBERON:0001285;2.22e-07;15!UBERON:0007684;2.22e-07;15!UBERON:0002113;8.21e-07;24!UBERON:0011143;8.21e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.58e-07,309;UBERON:0004211,1.99e-07,15;UBERON:0009773,1.99e-07,15;UBERON:0001231,1.99e-07,15;UBERON:0001285,1.99e-07,15;UBERON:0007684,1.99e-07,15;UBERON:0004208,1.99e-07,15;UBERON:0000483,3.59e-07,306 | |||
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| ||
|short_description=p1@PAFAH1B3 | |||
}} | }} |
Latest revision as of 08:56, 18 September 2015
Short description: | p1@PAFAH1B3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAFAH1B3_5end |
Coexpression cluster: | C1824_Alveolar_nonsmall_brain_duodenum_Neurons_Renal_temporal |
Association with transcript: | 0bp_to_ENST00000262890, NM_002573, uc002otg.2_5end |
EntrezGene: | PAFAH1B3 |
HGNC: | 8576 |
UniProt: | Q15102 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.00e-24 | 253 |
embryonic cell | 1.97e-18 | 250 |
ectodermal cell | 1.19e-11 | 72 |
neurectodermal cell | 5.57e-11 | 59 |
neural cell | 2.55e-09 | 25 |
migratory neural crest cell | 2.96e-09 | 41 |
epithelial cell of nephron | 1.99e-07 | 15 |
kidney cell | 4.49e-07 | 17 |
kidney epithelial cell | 4.49e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.58e-07 | 309 |
nephron epithelium | 1.99e-07 | 15 |
renal tubule | 1.99e-07 | 15 |
nephron tubule | 1.99e-07 | 15 |
nephron | 1.99e-07 | 15 |
uriniferous tubule | 1.99e-07 | 15 |
nephrogenic mesenchyme | 1.99e-07 | 15 |
epithelium | 3.59e-07 | 306 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.57e-18 | 235 |
disease of cellular proliferation | 3.70e-17 | 239 |
cell type cancer | 3.52e-11 | 143 |
organ system cancer | 7.37e-11 | 137 |
carcinoma | 1.17e-07 | 106 |