FFCP PHASE1:Hg19::chr1:46768941..46768957,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:46768941..46768957,- to FFCP PHASE1:Hg19::chr1:46768941..46768957,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10489 | |EntrezGene=10489 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16917 | |HGNC=16917 | ||
|TSSclassifier=strong | |||
|UniProt=B5MD92,E9PE58 | |UniProt=B5MD92,E9PE58 | ||
|association_with_transcript=0bp_to_ENST00000254454,ENST00000371972,ENST00000498402_5end | |||
|cluster_id=chr1:46768941..46768957,- | |||
|description=CAGE_peak_1_at_LRRC41_5end | |||
|id=chr1:46768941..46768957,- | |||
|ontology_enrichment_celltype=CL:0000055!4.96e-18!180;CL:0002321!1.80e-16!248;CL:0000220!1.96e-16!246;CL:0000183!2.81e-15!59;CL:0000680!2.87e-13!57;CL:0000056!2.87e-13!57;CL:0000355!2.87e-13!57;CL:0000187!5.66e-13!54;CL:0000192!1.01e-12!42;CL:0000514!1.01e-12!42;CL:0000222!1.69e-12!119;CL:0000393!9.14e-12!60;CL:0000211!9.14e-12!60;CL:0000359!2.64e-10!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.72e-10;32!CL:0000192;2.24e-09;43!CL:0000349;1.84e-07;19!CL:0000187;1.98e-07;55!CL:0000393;5.14e-07;61!CL:0000211;5.14e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.53e-17,250;CL:0000680,2.10e-13,58;CL:0000056,2.10e-13,58;CL:0000355,2.10e-13,58;CL:0000187,4.16e-13,55;CL:0000192,7.69e-13,43;CL:0000514,7.69e-13,43;CL:0000222,9.76e-13,121;CL:0000393,6.62e-12,61;CL:0000211,6.62e-12,61;CL:0000359,2.64e-10,32;CL:0000349,1.97e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;2.24e-09;43!CL:0000355;6.69e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.20e-16!365;UBERON:0000468!1.31e-14!659;UBERON:0005256!2.10e-13!143;UBERON:0001134!9.30e-13!61;UBERON:0002036!9.30e-13!61;UBERON:0003082!9.30e-13!61;UBERON:0000486!2.15e-12!82;UBERON:0002385!2.19e-12!63;UBERON:0001015!2.19e-12!63;UBERON:0000383!2.19e-12!63;UBERON:0000119!8.48e-12!312;UBERON:0000483!1.35e-11!309;UBERON:0004290!2.04e-11!70;UBERON:0002100!2.84e-11!216;UBERON:0000481!7.73e-11!347;UBERON:0000467!1.41e-10!625;UBERON:0000480!2.04e-10!626;UBERON:0000914!2.47e-10!83;UBERON:0002329!2.47e-10!83;UBERON:0003077!2.47e-10!83;UBERON:0003059!2.47e-10!83;UBERON:0007282!2.47e-10!83;UBERON:0009618!2.47e-10!83;UBERON:0007285!2.47e-10!83;UBERON:0000922!6.40e-10!612;UBERON:0003914!8.93e-10!118;UBERON:0000923!2.31e-09!604;UBERON:0005291!2.31e-09!604;UBERON:0006598!2.31e-09!604;UBERON:0002532!2.31e-09!604;UBERON:0002050!2.85e-09!605;UBERON:0005423!2.85e-09!605;UBERON:0003104!3.14e-09!238;UBERON:0009142!3.14e-09!238;UBERON:0000490!2.51e-08!138;UBERON:0000477!3.59e-08!286;UBERON:0000025!1.31e-07!194;UBERON:0002049!1.77e-07!79;UBERON:0007798!1.77e-07!79;UBERON:0004111!1.91e-07!241;UBERON:0000478!2.55e-07!24;UBERON:0001637!2.70e-07!42;UBERON:0003509!2.70e-07!42;UBERON:0004572!2.70e-07!42;UBERON:0004872!3.12e-07!84;UBERON:0009569!9.45e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.54e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.71e-14,160;UBERON:0009142,2.71e-14,160;UBERON:0007503,6.26e-14,78;UBERON:0000119,5.77e-13,309;UBERON:0001134,6.75e-13,62;UBERON:0002036,6.75e-13,62;UBERON:0003082,6.75e-13,62;UBERON:0000483,9.37e-13,306;UBERON:0000486,1.53e-12,83;UBERON:0002385,1.58e-12,64;UBERON:0001015,1.58e-12,64;UBERON:0000383,1.58e-12,64;UBERON:0005256,6.12e-12,122;UBERON:0002329,1.46e-11,71;UBERON:0003059,1.46e-11,71;UBERON:0007282,1.46e-11,71;UBERON:0004290,1.46e-11,71;UBERON:0009618,1.46e-11,71;UBERON:0002100,1.59e-11,199;UBERON:0007524,1.68e-11,73;UBERON:0003077,2.65e-11,72;UBERON:0007285,2.65e-11,72;UBERON:0003914,1.23e-09,117;UBERON:0005423,5.95e-09,581;UBERON:0000922,6.23e-09,592;UBERON:0000490,4.22e-08,148;UBERON:0002049,1.34e-07,78;UBERON:0007798,1.34e-07,78;UBERON:0006554,1.36e-07,47;UBERON:0000025,1.61e-07,192;UBERON:0004111,1.72e-07,240;UBERON:0004872,2.42e-07,83;UBERON:0000478,2.55e-07,24;UBERON:0001637,2.70e-07,42;UBERON:0003509,2.70e-07,42;UBERON:0004572,2.70e-07,42;UBERON:0002050,3.38e-07,564;UBERON:0001008,3.90e-07,48;UBERON:0000923,5.77e-07,560;UBERON:0010316,5.77e-07,560;UBERON:0005291,5.77e-07,560;UBERON:0006598,5.77e-07,560;UBERON:0010317,5.77e-07,560;UBERON:0002532,5.77e-07,560 | |||
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| ||
|short_description=p1@LRRC41 | |||
}} | }} |
Latest revision as of 08:50, 18 September 2015
Short description: | p1@LRRC41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC41_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000254454, ENST00000371972, ENST00000498402_5end |
EntrezGene: | LRRC41 |
HGNC: | 16917 |
UniProt: | B5MD92E9PE58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.53e-17 | 250 |
muscle precursor cell | 2.10e-13 | 58 |
myoblast | 2.10e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.10e-13 | 58 |
muscle cell | 4.16e-13 | 55 |
smooth muscle cell | 7.69e-13 | 43 |
smooth muscle myoblast | 7.69e-13 | 43 |
mesodermal cell | 9.76e-13 | 121 |
electrically responsive cell | 6.62e-12 | 61 |
electrically active cell | 6.62e-12 | 61 |
vascular associated smooth muscle cell | 2.64e-10 | 32 |
extraembryonic cell | 1.97e-07 | 19 |