FFCP PHASE1:Hg19::chr6:34204642..34204664,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:34204642..34204664,+
|short_description=p2@HMGA1
|description=CAGE_peak_2_at_HMGA1_5end
|association_with_transcript=0bp_to_ENST00000327014,ENST00000347617...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100130009,3159 | |EntrezGene=100130009,3159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5010 | |HGNC=5010 | ||
|TSSclassifier=strong | |||
|UniProt=P17096,Q5T6U8 | |UniProt=P17096,Q5T6U8 | ||
|association_with_transcript=0bp_to_ENST00000327014,ENST00000347617,ENST00000357318,ENST00000395004,ENST00000447654,NM_145901,NM_145902,uc003oix.2,uc003oiy.2,uc003oiz.2,uc003oja.2_5end | |||
|cluster_id=chr6:34204642..34204664,+ | |||
|description=CAGE_peak_2_at_HMGA1_5end | |||
|id=chr6:34204642..34204664,+ | |||
|ontology_enrichment_celltype=CL:0000012!8.66e-39!682;CL:0000548!1.31e-37!679;CL:0000004!1.31e-37!679;CL:0000255!1.31e-37!679;CL:0000144!4.32e-28!625;CL:0000003!4.55e-28!722;CL:0002371!4.38e-20!591;CL:0002321!2.96e-18!248;CL:0000220!2.00e-17!246;CL:0000066!2.02e-16!254;CL:0000063!8.20e-14!578;CL:0000222!1.09e-08!119;CL:0000183!1.46e-08!59;CL:0000393!4.43e-08!60;CL:0000211!4.43e-08!60;CL:1000449!5.67e-08!16;CL:0000221!2.78e-07!71;CL:0000187!5.43e-07!54;CL:1000497!9.39e-07!18;CL:0002518!9.39e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.97e-08;15!CL:1000497;4.30e-07;17!CL:0002518;4.30e-07;17!CL:1000507;6.80e-07;10!CL:1000494;6.80e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.96e-18,250;CL:0000066,1.80e-16,253;CL:0000222,8.14e-09,121;CL:1000449,2.00e-08,15;CL:0000393,5.80e-08,61;CL:0000211,5.80e-08,61;CL:0000221,1.69e-07,72;CL:1000497,4.40e-07,17;CL:0002518,4.40e-07,17;CL:1000507,6.76e-07,10;CL:1000494,6.76e-07,10;CL:0000187,7.00e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!3.62e-12!239;DOID:162!2.01e-11!235;DOID:0050686!2.42e-09!137;DOID:8692!3.23e-09!31;DOID:1240!1.17e-08!39;DOID:2531!4.91e-08!51;DOID:0060083!4.91e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;5.74e-09;31!DOID:1240;3.59e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.62e-12,239;DOID:162,2.01e-11,235;DOID:0050686,2.42e-09,137;DOID:8692,3.23e-09,31;DOID:1240,1.17e-08,39;DOID:2531,4.91e-08,51;DOID:0060083,4.91e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0004211!5.67e-08!16;UBERON:0001285!5.67e-08!16;UBERON:0007684!5.67e-08!16;UBERON:0003220!5.67e-08!16;UBERON:0004208!5.67e-08!16;UBERON:0006555!9.48e-07!17;UBERON:0005103!9.48e-07!17;UBERON:0000083!9.48e-07!17;UBERON:0009201!9.48e-07!17;UBERON:0004819!9.48e-07!17;UBERON:0006553!9.48e-07!17;UBERON:0003074!9.48e-07!17;UBERON:0003060!9.48e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.97e-08;15!UBERON:0004819;1.97e-08;15!UBERON:0001285;1.97e-08;15!UBERON:0007684;1.97e-08;15!UBERON:0004211;6.80e-07;10!UBERON:0009773;6.80e-07;10!UBERON:0001231;6.80e-07;10!UBERON:0004810;6.80e-07;10!UBERON:0003914;9.99e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.00e-08,15;UBERON:0009773,2.00e-08,15;UBERON:0001231,2.00e-08,15;UBERON:0001285,2.00e-08,15;UBERON:0007684,2.00e-08,15;UBERON:0004208,2.00e-08,15;UBERON:0007503,3.24e-07,78;UBERON:0006555,4.25e-07,16;UBERON:0004819,4.25e-07,16;UBERON:0004810,6.76e-07,10 | |||
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| ||
|short_description=p2@HMGA1 | |||
}} | }} |
Latest revision as of 08:48, 18 September 2015
Short description: | p2@HMGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327014, ENST00000347617, ENST00000357318, ENST00000395004, ENST00000447654, NM_145901, NM_145902, uc003oix.2, uc003oiy.2, uc003oiz.2, uc003oja.2_5end |
EntrezGene: | 100130009,3159 |
HGNC: | 5010 |
UniProt: | P17096Q5T6U8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.96e-18 | 250 |
epithelial cell | 1.80e-16 | 253 |
mesodermal cell | 8.14e-09 | 121 |
epithelial cell of nephron | 2.00e-08 | 15 |
electrically responsive cell | 5.80e-08 | 61 |
electrically active cell | 5.80e-08 | 61 |
ectodermal cell | 1.69e-07 | 72 |
kidney cell | 4.40e-07 | 17 |
kidney epithelial cell | 4.40e-07 | 17 |
kidney tubule cell | 6.76e-07 | 10 |
nephron tubule epithelial cell | 6.76e-07 | 10 |
muscle cell | 7.00e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.00e-08 | 15 |
renal tubule | 2.00e-08 | 15 |
nephron tubule | 2.00e-08 | 15 |
nephron | 2.00e-08 | 15 |
uriniferous tubule | 2.00e-08 | 15 |
nephrogenic mesenchyme | 2.00e-08 | 15 |
epithelial vesicle | 3.24e-07 | 78 |
excretory tube | 4.25e-07 | 16 |
kidney epithelium | 4.25e-07 | 16 |
nephron tubule epithelium | 6.76e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.62e-12 | 239 |
cancer | 2.01e-11 | 235 |
organ system cancer | 2.42e-09 | 137 |
myeloid leukemia | 3.23e-09 | 31 |
leukemia | 1.17e-08 | 39 |
hematologic cancer | 4.91e-08 | 51 |
immune system cancer | 4.91e-08 | 51 |