FFCP PHASE1:Hg19::chr8:42623674..42623685,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8973 | |EntrezGene=8973 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15963 | |HGNC=15963 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-55bp_to_uc003xpj.2,uc011lcw.1_5end | |association_with_transcript=-55bp_to_uc003xpj.2,uc011lcw.1_5end | ||
|cluster_id=chr8:42623674..42623685,- | |||
|coexpression_cluster_id=C4073 | |||
|description=CAGE_peak_3_at_CHRNA6_5end | |description=CAGE_peak_3_at_CHRNA6_5end | ||
|id=chr8:42623674..42623685,- | |id=chr8:42623674..42623685,- | ||
|ontology_enrichment_celltype=CL:0000838!1.03e-09!52;CL:0000542!1.75e-09!53;CL:0000051!1.75e-09!53;CL:0000080!1.01e-07!6 | |ontology_enrichment_celltype=CL:0000838!1.03e-09!52;CL:0000542!1.75e-09!53;CL:0000051!1.75e-09!53;CL:0000080!1.01e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002569;1.44e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,1.44e-09,6 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.89e-08;7 | |||
|ontology_enrichment_disease=DOID:0060058!2.01e-11!10 | |ontology_enrichment_disease=DOID:0060058!2.01e-11!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;7.72e-21;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,8.54e-21,10 | |||
|ontology_enrichment_uberon=UBERON:0001950!4.94e-12!20;UBERON:0001049!1.04e-11!57;UBERON:0005068!1.04e-11!57;UBERON:0006241!1.04e-11!57;UBERON:0007135!1.04e-11!57;UBERON:0002616!3.22e-11!59;UBERON:0002619!7.07e-11!22;UBERON:0003075!1.49e-10!86;UBERON:0007284!1.49e-10!86;UBERON:0001893!1.86e-10!34;UBERON:0005743!2.17e-10!86;UBERON:0002780!2.91e-10!41;UBERON:0001890!2.91e-10!41;UBERON:0006240!2.91e-10!41;UBERON:0003080!5.66e-10!42;UBERON:0002346!6.34e-10!90;UBERON:0001017!1.21e-09!82;UBERON:0000956!1.77e-09!25;UBERON:0000203!1.77e-09!25;UBERON:0002360!2.16e-09!2;UBERON:0000094!2.16e-09!2;UBERON:0007645!2.16e-09!2;UBERON:0000073!4.40e-09!94;UBERON:0001016!4.40e-09!94;UBERON:0001869!4.76e-09!32;UBERON:0000955!5.07e-09!69;UBERON:0006238!5.07e-09!69;UBERON:0002791!8.62e-09!33;UBERON:0001872!2.12e-08!5;UBERON:0007023!4.04e-08!115;UBERON:0002331!8.10e-08!10;UBERON:0000358!8.10e-08!10;UBERON:0000307!8.10e-08!10;UBERON:0000091!8.10e-08!10;UBERON:0000087!8.10e-08!10;UBERON:0007806!8.10e-08!10;UBERON:0008780!8.10e-08!10;UBERON:0005728!8.10e-08!10;UBERON:0003056!1.41e-07!61;UBERON:0000200!4.74e-07!6 | |ontology_enrichment_uberon=UBERON:0001950!4.94e-12!20;UBERON:0001049!1.04e-11!57;UBERON:0005068!1.04e-11!57;UBERON:0006241!1.04e-11!57;UBERON:0007135!1.04e-11!57;UBERON:0002616!3.22e-11!59;UBERON:0002619!7.07e-11!22;UBERON:0003075!1.49e-10!86;UBERON:0007284!1.49e-10!86;UBERON:0001893!1.86e-10!34;UBERON:0005743!2.17e-10!86;UBERON:0002780!2.91e-10!41;UBERON:0001890!2.91e-10!41;UBERON:0006240!2.91e-10!41;UBERON:0003080!5.66e-10!42;UBERON:0002346!6.34e-10!90;UBERON:0001017!1.21e-09!82;UBERON:0000956!1.77e-09!25;UBERON:0000203!1.77e-09!25;UBERON:0002360!2.16e-09!2;UBERON:0000094!2.16e-09!2;UBERON:0007645!2.16e-09!2;UBERON:0000073!4.40e-09!94;UBERON:0001016!4.40e-09!94;UBERON:0001869!4.76e-09!32;UBERON:0000955!5.07e-09!69;UBERON:0006238!5.07e-09!69;UBERON:0002791!8.62e-09!33;UBERON:0001872!2.12e-08!5;UBERON:0007023!4.04e-08!115;UBERON:0002331!8.10e-08!10;UBERON:0000358!8.10e-08!10;UBERON:0000307!8.10e-08!10;UBERON:0000091!8.10e-08!10;UBERON:0000087!8.10e-08!10;UBERON:0007806!8.10e-08!10;UBERON:0008780!8.10e-08!10;UBERON:0005728!8.10e-08!10;UBERON:0003056!1.41e-07!61;UBERON:0000200!4.74e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;9.44e-21;10!UBERON:0002106;6.76e-18;3!UBERON:0004177;2.66e-11;5!UBERON:0005057;2.66e-11;5!UBERON:0003422;1.44e-09;6!UBERON:0000478;2.67e-09;24!UBERON:0003104;2.18e-08;7!UBERON:0009142;2.18e-08;7!UBERON:0002390;3.48e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,8.54e-21,10;UBERON:0000358,8.54e-21,10;UBERON:0000307,8.54e-21,10;UBERON:0000091,8.54e-21,10;UBERON:0000087,8.54e-21,10;UBERON:0007010,8.54e-21,10;UBERON:0007806,8.54e-21,10;UBERON:0008780,8.54e-21,10;UBERON:0005728,8.54e-21,10;UBERON:0002106,6.76e-18,3;UBERON:0004854,6.76e-18,3;UBERON:0009034,6.76e-18,3;UBERON:0002095,6.76e-18,3;UBERON:0004782,6.76e-18,3;UBERON:0003281,6.76e-18,3;UBERON:0009664,6.76e-18,3;UBERON:0002296,6.76e-18,3;UBERON:0005602,6.76e-18,3;UBERON:0001179,6.76e-18,3;UBERON:0006293,6.76e-18,3;UBERON:0003422,1.44e-09,6;UBERON:0000478,2.56e-09,24;UBERON:0004177,1.89e-08,7;UBERON:0005057,1.89e-08,7;UBERON:0000945,1.49e-07,8;UBERON:0010039,1.49e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0,0,0,0,0,0,0.154934401160603,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0.328875809207352,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.774054819518572,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889563386041866,1.72989514525104,0.939797545549098,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263091094251396,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19811698959773,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0,0,0,0,0,0,0,0.154934401160603,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0.328875809207352,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.774054819518572,0.591095237907095,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889563386041866,1.72989514525104,0.939797545549098,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0.425246896606173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263091094251396,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19811698959773,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@CHRNA6 | |short_description=p3@CHRNA6 | ||
}} | }} |
Latest revision as of 08:19, 18 September 2015
Short description: | p3@CHRNA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CHRNA6_5end |
Coexpression cluster: | C4073_splenic_cord_adult_hairy_spleen_Multipotent_Burkitt |
Association with transcript: | -55bp_to_uc003xpj.2, uc011lcw.1_5end |
EntrezGene: | CHRNA6 |
HGNC: | 15963 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 1.44e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 8.54e-21 | 10 |
blastocyst | 8.54e-21 | 10 |
blastula | 8.54e-21 | 10 |
bilaminar disc | 8.54e-21 | 10 |
inner cell mass | 8.54e-21 | 10 |
cleaving embryo | 8.54e-21 | 10 |
connecting stalk | 8.54e-21 | 10 |
inner cell mass derived epiblast | 8.54e-21 | 10 |
extraembryonic mesoderm | 8.54e-21 | 10 |
spleen | 6.76e-18 | 3 |
gastrointestinal system mesentery | 6.76e-18 | 3 |
stomach region | 6.76e-18 | 3 |
mesentery | 6.76e-18 | 3 |
gastrointestinal system serosa | 6.76e-18 | 3 |
mesentery of stomach | 6.76e-18 | 3 |
gut mesentery | 6.76e-18 | 3 |
dorsal mesentery | 6.76e-18 | 3 |
dorsal mesogastrium | 6.76e-18 | 3 |
peritoneal cavity | 6.76e-18 | 3 |
spleen primordium | 6.76e-18 | 3 |
mesenchyme of umbilical cord | 1.44e-09 | 6 |
extraembryonic structure | 2.56e-09 | 24 |
hemopoietic organ | 1.89e-08 | 7 |
immune organ | 1.89e-08 | 7 |
stomach | 1.49e-07 | 8 |
food storage organ | 1.49e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 8.54e-21 | 10 |