FFCP PHASE2:Hg19::chr21:38071778..38071790,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:6493 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:10883 |TSSclas...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=6493 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=10883 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q14190 | ||
|association_with_transcript=-200bp_to_ENST00000430056,NM_005069,NM_009586,uc002yvp.2,uc002yvq.2,uc002yvr.2_5end | |association_with_transcript=-200bp_to_ENST00000430056,NM_005069,NM_009586,uc002yvp.2,uc002yvq.2,uc002yvr.2_5end | ||
|cluster_id=chr21:38071778..38071790,+ | |cluster_id=chr21:38071778..38071790,+ |
Latest revision as of 08:03, 18 September 2015
Short description: | p9@SIM2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SIM2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -200bp_to_ENST00000430056, NM_005069, NM_009586, uc002yvp.2, uc002yvq.2, uc002yvr.2_5end |
EntrezGene: | SIM2 |
HGNC: | 10883 |
UniProt: | Q14190 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p9@SIM2 |
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5.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
cardiac fibroblast | 2.74e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
kidney tubule cell | 6.13e-08 | 10 |
nephron tubule epithelial cell | 6.13e-08 | 10 |
Showing 1 to 7 of 7 entries
Ontology term | p-value | n |
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cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
nephron tubule epithelium | 6.13e-08 | 10 |
Showing 1 to 3 of 3 entries
Ontology term | p-value | n |
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chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |
Showing 1 to 6 of 6 entries