FFCP PHASE1:Hg19::chr6:33398981..33399013,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8831 | |EntrezGene=8831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11497 | |HGNC=11497 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-494bp_to_ENST00000428982_5end | |association_with_transcript=-494bp_to_ENST00000428982_5end | ||
|cluster_id=chr6:33398981..33399013,+ | |||
|description=CAGE_peak_3_at_SYNGAP1_5end | |description=CAGE_peak_3_at_SYNGAP1_5end | ||
|id=chr6:33398981..33399013,+ | |id=chr6:33398981..33399013,+ | ||
|ontology_enrichment_celltype=CL:0000542!6.03e-18!53;CL:0000051!6.03e-18!53;CL:0000838!2.24e-17!52;CL:0000945!1.30e-11!24;CL:0000826!1.30e-11!24;CL:0000037!1.38e-08!172;CL:0000566!1.38e-08!172;CL:0000988!3.49e-08!182;CL:0002087!1.79e-07!119;CL:0002032!2.85e-07!165;CL:0000837!2.85e-07!165 | |ontology_enrichment_celltype=CL:0000542!6.03e-18!53;CL:0000051!6.03e-18!53;CL:0000838!2.24e-17!52;CL:0000945!1.30e-11!24;CL:0000826!1.30e-11!24;CL:0000037!1.38e-08!172;CL:0000566!1.38e-08!172;CL:0000988!3.49e-08!182;CL:0002087!1.79e-07!119;CL:0002032!2.85e-07!165;CL:0000837!2.85e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000945;3.01e-15;24!CL:0000542;6.97e-11;53!CL:0000236;1.18e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.45e-18,53;CL:0000051,1.45e-18,53;CL:0000838,8.59e-18,52;CL:0000945,1.81e-15,24;CL:0000826,1.81e-15,24;CL:0000236,3.73e-08,14;CL:0000037,5.90e-07,168 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.79e-12;82!CL:0000051;6.97e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.67e-31!94;UBERON:0001016!2.67e-31!94;UBERON:0005743!5.12e-31!86;UBERON:0001017!2.40e-29!82;UBERON:0001049!5.82e-27!57;UBERON:0005068!5.82e-27!57;UBERON:0006241!5.82e-27!57;UBERON:0007135!5.82e-27!57;UBERON:0007023!4.46e-25!115;UBERON:0000955!4.79e-25!69;UBERON:0006238!4.79e-25!69;UBERON:0002780!5.53e-24!41;UBERON:0001890!5.53e-24!41;UBERON:0006240!5.53e-24!41;UBERON:0002616!4.92e-23!59;UBERON:0003080!7.37e-23!42;UBERON:0002346!3.87e-22!90;UBERON:0003075!5.46e-21!86;UBERON:0007284!5.46e-21!86;UBERON:0001893!3.79e-19!34;UBERON:0002020!4.87e-19!34;UBERON:0003528!4.87e-19!34;UBERON:0002791!1.95e-18!33;UBERON:0003056!1.96e-18!61;UBERON:0001869!6.16e-18!32;UBERON:0002619!1.49e-15!22;UBERON:0001950!4.86e-14!20;UBERON:0000956!8.47e-14!25;UBERON:0000203!8.47e-14!25;UBERON:0000153!1.58e-11!129;UBERON:0007811!1.58e-11!129;UBERON:0000924!9.44e-11!173;UBERON:0006601!9.44e-11!173;UBERON:0000033!2.56e-10!123;UBERON:0004121!6.31e-10!169;UBERON:0002420!4.91e-07!9;UBERON:0007245!4.91e-07!9;UBERON:0010009!4.91e-07!9;UBERON:0010011!4.91e-07!9;UBERON:0000454!4.91e-07!9;UBERON:0002308!9.58e-07!9;UBERON:0000125!9.58e-07!9 | |ontology_enrichment_uberon=UBERON:0000073!2.67e-31!94;UBERON:0001016!2.67e-31!94;UBERON:0005743!5.12e-31!86;UBERON:0001017!2.40e-29!82;UBERON:0001049!5.82e-27!57;UBERON:0005068!5.82e-27!57;UBERON:0006241!5.82e-27!57;UBERON:0007135!5.82e-27!57;UBERON:0007023!4.46e-25!115;UBERON:0000955!4.79e-25!69;UBERON:0006238!4.79e-25!69;UBERON:0002780!5.53e-24!41;UBERON:0001890!5.53e-24!41;UBERON:0006240!5.53e-24!41;UBERON:0002616!4.92e-23!59;UBERON:0003080!7.37e-23!42;UBERON:0002346!3.87e-22!90;UBERON:0003075!5.46e-21!86;UBERON:0007284!5.46e-21!86;UBERON:0001893!3.79e-19!34;UBERON:0002020!4.87e-19!34;UBERON:0003528!4.87e-19!34;UBERON:0002791!1.95e-18!33;UBERON:0003056!1.96e-18!61;UBERON:0001869!6.16e-18!32;UBERON:0002619!1.49e-15!22;UBERON:0001950!4.86e-14!20;UBERON:0000956!8.47e-14!25;UBERON:0000203!8.47e-14!25;UBERON:0000153!1.58e-11!129;UBERON:0007811!1.58e-11!129;UBERON:0000924!9.44e-11!173;UBERON:0006601!9.44e-11!173;UBERON:0000033!2.56e-10!123;UBERON:0004121!6.31e-10!169;UBERON:0002420!4.91e-07!9;UBERON:0007245!4.91e-07!9;UBERON:0010009!4.91e-07!9;UBERON:0010011!4.91e-07!9;UBERON:0000454!4.91e-07!9;UBERON:0002308!9.58e-07!9;UBERON:0000125!9.58e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.36e-22;41!UBERON:0001890;1.36e-22;41!UBERON:0001893;2.92e-21;34!UBERON:0003528;1.16e-20;34!UBERON:0002020;1.16e-20;34!UBERON:0000073;2.16e-20;53!UBERON:0002616;2.16e-20;53!UBERON:0001869;2.43e-20;32!UBERON:0002791;3.20e-20;32!UBERON:0002619;4.95e-20;22!UBERON:0001950;8.41e-18;20!UBERON:0000956;1.02e-16;25!UBERON:0000203;1.02e-16;25!UBERON:0001017;6.48e-15;75!UBERON:0000955;2.87e-14;68!UBERON:0001016;2.24e-13;83!UBERON:0002420;9.82e-10;9!UBERON:0007245;9.82e-10;9!UBERON:0010009;9.82e-10;9!UBERON:0010011;9.82e-10;9!UBERON:0000454;9.82e-10;9!UBERON:0000125;2.65e-09;9!UBERON:0002308;2.65e-09;9!UBERON:0001894;9.79e-09;7!UBERON:0007023;2.99e-08;114!UBERON:0000200;6.64e-08;6!UBERON:0009663;1.41e-07;7!UBERON:0002298;2.88e-07;6!UBERON:0000349;4.36e-07;5 | |||
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| ||
|short_description=p3@SYNGAP1 | |short_description=p3@SYNGAP1 | ||
}} | }} |
Latest revision as of 07:36, 18 September 2015
Short description: | p3@SYNGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SYNGAP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -494bp_to_ENST00000428982_5end |
EntrezGene: | SYNGAP1 |
HGNC: | 11497 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.45e-18 | 53 |
common lymphoid progenitor | 1.45e-18 | 53 |
lymphoid lineage restricted progenitor cell | 8.59e-18 | 52 |
lymphocyte of B lineage | 1.81e-15 | 24 |
pro-B cell | 1.81e-15 | 24 |
B cell | 3.73e-08 | 14 |
hematopoietic stem cell | 5.90e-07 | 168 |