FFCP PHASE1:Hg19::chr1:44401579..44401643,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9048 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=727 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_uc001ckw.2_5end | |||
|cluster_id=chr1:44401579..44401643,+ | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_2_at_ARTN_5end | |||
|id=chr1:44401579..44401643,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.29e-19!254;CL:0002076!5.65e-15!43;CL:0002159!2.10e-14!13;CL:0000223!4.36e-12!59;CL:0002368!9.25e-10!13;CL:0002077!4.40e-09!33;CL:0000240!2.43e-08!6;CL:0000311!2.43e-08!6;CL:0000079!2.43e-08!6;CL:0000237!2.43e-08!6;CL:0000036!2.43e-08!6;CL:0000357!2.43e-08!6;CL:0000114!2.43e-08!6;CL:0000362!2.60e-08!8;CL:0000312!3.51e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.57e-18;42!CL:0002368;1.71e-16;13!CL:0002159;4.40e-16;14!CL:0000244;3.98e-10;4!CL:0000731;3.98e-10;4!CL:0002202;1.29e-09;9!CL:0002632;1.29e-09;9!CL:0002077;2.86e-09;34!CL:0002328;2.70e-08;3!CL:0000307;2.73e-08;3!CL:0002621;5.02e-08;3!CL:0002166;1.47e-07;3!CL:0000240;5.47e-07;6!CL:0000311;5.47e-07;6!CL:0000079;5.47e-07;6!CL:0000237;5.47e-07;6!CL:0000362;5.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.15e-29,253;CL:0002076,2.87e-23,42;CL:0000223,1.64e-16,58;CL:0002368,1.85e-16,13;CL:0002159,3.93e-16,14;CL:0002077,1.48e-10,34;CL:0000244,4.49e-10,4;CL:0000731,4.49e-10,4;CL:0002202,1.37e-09,9;CL:0002632,1.37e-09,9;CL:0000068,2.83e-08,3;CL:0000069,2.83e-08,3;CL:0002328,2.83e-08,3;CL:0000307,2.83e-08,3;CL:0000377,2.83e-08,3;CL:0002621,5.09e-08,3;CL:0002166,1.27e-07,3;CL:0000240,5.08e-07,6;CL:0000311,5.08e-07,6;CL:0000079,5.08e-07,6;CL:0000237,5.08e-07,6;CL:0000036,5.08e-07,6;CL:0000357,5.08e-07,6;CL:0000114,5.08e-07,6;CL:0000362,5.55e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.22e-09;58!CL:0000377;2.73e-08;3!CL:0000357;5.47e-07;6!CL:0000114;5.47e-07;6 | |||
|ontology_enrichment_disease=DOID:305!4.19e-07!106;DOID:299!7.26e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;3.20e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.56e-08,25;DOID:305,1.75e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.25e-12!115;UBERON:0000466!1.85e-09!126;UBERON:0000464!2.21e-09!104;UBERON:0004119!6.93e-09!169;UBERON:0000925!6.93e-09!169;UBERON:0006595!6.93e-09!169;UBERON:0006554!2.43e-08!44;UBERON:0004121!4.61e-08!169;UBERON:0001008!5.11e-08!45;UBERON:0000924!5.16e-08!173;UBERON:0006601!5.16e-08!173;UBERON:0001049!6.99e-08!57;UBERON:0005068!6.99e-08!57;UBERON:0006241!6.99e-08!57;UBERON:0007135!6.99e-08!57;UBERON:0002020!7.89e-08!34;UBERON:0003528!7.89e-08!34;UBERON:0000475!8.04e-08!365;UBERON:0001869!8.69e-08!32;UBERON:0000922!1.27e-07!612;UBERON:0000033!1.35e-07!123;UBERON:0000064!1.69e-07!219;UBERON:0000365!1.98e-07!5;UBERON:0000468!2.50e-07!659;UBERON:0000153!2.87e-07!129;UBERON:0007811!2.87e-07!129;UBERON:0003135!3.34e-07!11;UBERON:0000062!4.07e-07!511;UBERON:0001893!4.60e-07!34;UBERON:0002553!8.03e-07!70;UBERON:0002616!9.37e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.05e-11;5!UBERON:0000486;1.79e-11;12!UBERON:0005910;1.13e-09;6!UBERON:0004815;2.70e-08;3!UBERON:0002031;2.70e-08;3!UBERON:0006554;4.59e-08;30!UBERON:0001008;4.59e-08;30!UBERON:0001949;5.02e-08;3!UBERON:0002110;3.51e-07;3!UBERON:0007196;5.33e-07;15!UBERON:0001558;5.33e-07;15!UBERON:0005911;7.87e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.42e-11,5;UBERON:0005910,1.45e-09,6;UBERON:0004119,5.42e-09,160;UBERON:0000925,5.42e-09,160;UBERON:0006595,5.42e-09,160;UBERON:0004815,2.83e-08,3;UBERON:0002031,2.83e-08,3;UBERON:0001949,5.09e-08,3;UBERON:0002110,3.29e-07,3;UBERON:0006242,3.29e-07,3;UBERON:0006554,3.74e-07,47;UBERON:0001004,4.98e-07,74;UBERON:0007196,5.61e-07,15;UBERON:0001558,5.61e-07,15;UBERON:0001008,6.22e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,22.9855306119732,16.2651196140255,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,1.0478326039817,23.3148984507227,25.9549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2632918249887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8226077771446,5.18217629122586,8.31733326628111,1.70763188581434,0.265059536642971,1.51052125730374,0.725627385107593,2.01856680700503,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.983907508344908,0,36.8760958972982,24.7283857166763,21.8147870133239,3.98130314181677,0,0,0,0,0,0,0,0,7.90204397959275,3.43394464837949,0,0,0,3.74935335947108,5.54341023056236,3.96970272278682,3.04498977189684,10.1721878479887,9.58456697913028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,22.4567246739679,6.62983120338454,0,0,0,3.60959690325929,3.23464415838542,0,1.46139224653261,0.949964660035881,0,0,0,0,0,0,2.80363900349542,10.8039881160734,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,9.76251414593493,12.3511446746939,0,0,0,0,0,0,0,0,0,2.31398881505369,3.45942121257191,4.72167036229961,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.12043634168789,12.0654409596442,20.6892871236513,0.282431402330337,10.7626343167807,11.7930032967338,15.076625220247,2.29723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7255567477589,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0.211125408127993,0,0.552567831062295,0.251932747854276,0,0,0,1.16828856491525,0,0,0.591860433821602,0,0,0.969332746095218,0,0,0.7812832832557,0,0,4.89311827627649,0,0,0,0,0,0,0.241192877250816,0,0.110579259931225,0.886642856860642,0,0,0,0.538651809526579,0,0,0.269272933229316,0,0,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0,1.63232808159148,0,0,2.98578579323551,0.176915129006678,1.83309043480088,0,0,0,0,0,0.468528891450678,0,0,0,0.394584402849391,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,2.84609546029793,0,5.55391162672419,1.27390116638691,0.174118413160805,1.92199335066233,0,0,0,0,0.387956065953678,0,0,0,0,0.316553979779393,4.88878456837007,3.60714691131902,1.49417096317547,0,2.88180834308212,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0,0,0,2.32991899054908,0.315132729228895,0.164831716762333,0.404421263125109,0,0,0,0.136203406111576,1.44677833618517,1.37539436597234,1.66176135211674,0,0,0.182248669974074,0,1.89133697518076,0.996637174564964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,6.12510975375914,0,0.122026264901963,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,0,0,0,0.468334905806882,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,8.95228849404445,5.59869534029676,0,0,0.157265941855896,0,0,0.425149840203366,0,0,0,0.0788617450012534,0.80057074828547,0,0,0.0642292250964595,1.41696576325585,0,0.205116364240755,0.252071696221718,0.345786262321089,0,0,2.55184068102667,0,0,0,0,0,0,0.150420656698515,0,3.90757005616546,0,0,0.147856086217045,0.405225507710368,0,0,0.19024743058172,0,0.548257766857182,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0,0.40781839786099,0.131545547125698,0,0,0.549451649953598,0.471346769748006,0,0,0,0,0,0,0,0,0,0.62164849248911,0,0,1.72090943528111,0,0,0.423387050190929,3.2074961596167,0,0,1.56597604516909,1.27595303699816,1.95068679971631,0,0,0,0,0,1.98950775161368,0,1.01651473835064,0,2.2644426535001,0,0,9.40634592723046,0.245148321753905,5.4205605833374,0.196308467114945,0,0,0,0,0,0,0.178553938605658,0,0,0,1.83491713361816,0,0,0.135982980381829,0.872701380680755,0,0,0,0,0,0,0,4.79347499787314,2.40495664739004,1.10273879441814,1.25353769646188,0.0757786982182394,0,0,0,1.27940389140589,0,0,0,0,0.318235791390825,0,0.870866991587845,0,0.26940821205835,1.43444410785353,0,1.22104902916462,0,0,0,2.34640942403454,0.366724332548599,0.406896178315738,0,0,0 | |||
|short_description=p2@ARTN | |||
}} |
Latest revision as of 05:26, 18 September 2015
Short description: | p2@ARTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARTN_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | -10bp_to_uc001ckw.2_5end |
EntrezGene: | ARTN |
HGNC: | 727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.15e-29 | 253 |
endo-epithelial cell | 2.87e-23 | 42 |
endodermal cell | 1.64e-16 | 58 |
respiratory epithelial cell | 1.85e-16 | 13 |
general ecto-epithelial cell | 3.93e-16 | 14 |
ecto-epithelial cell | 1.48e-10 | 34 |
transitional epithelial cell | 4.49e-10 | 4 |
urothelial cell | 4.49e-10 | 4 |
epithelial cell of tracheobronchial tree | 1.37e-09 | 9 |
epithelial cell of lower respiratory tract | 1.37e-09 | 9 |
duct epithelial cell | 2.83e-08 | 3 |
branched duct epithelial cell | 2.83e-08 | 3 |
bronchial epithelial cell | 2.83e-08 | 3 |
tracheal epithelial cell | 2.83e-08 | 3 |
tracheoblast | 2.83e-08 | 3 |
gingival epithelial cell | 5.09e-08 | 3 |
epithelial cell of Malassez | 1.27e-07 | 3 |
stratified squamous epithelial cell | 5.08e-07 | 6 |
keratin accumulating cell | 5.08e-07 | 6 |
stratified epithelial cell | 5.08e-07 | 6 |
keratinizing barrier epithelial cell | 5.08e-07 | 6 |
epithelial fate stem cell | 5.08e-07 | 6 |
stratified epithelial stem cell | 5.08e-07 | 6 |
surface ectodermal cell | 5.08e-07 | 6 |
epidermal cell | 5.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.42e-11 | 5 |
transitional epithelium | 1.45e-09 | 6 |
endoderm-derived structure | 5.42e-09 | 160 |
endoderm | 5.42e-09 | 160 |
presumptive endoderm | 5.42e-09 | 160 |
lower respiratory tract epithelium | 2.83e-08 | 3 |
epithelium of bronchus | 2.83e-08 | 3 |
gingival epithelium | 5.09e-08 | 3 |
gallbladder | 3.29e-07 | 3 |
gall bladder primordium | 3.29e-07 | 3 |
urinary system structure | 3.74e-07 | 47 |
respiratory system | 4.98e-07 | 74 |
tracheobronchial tree | 5.61e-07 | 15 |
lower respiratory tract | 5.61e-07 | 15 |
renal system | 6.22e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.56e-08 | 25 |
carcinoma | 1.75e-07 | 106 |