FFCP PHASE1:Hg19::chr19:41859814..41859837,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:41859814..41859837,- to FFCP PHASE1:Hg19::chr19:41859814..41859837,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7040 | |EntrezGene=7040 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11766 | |HGNC=11766 | ||
|TSSclassifier=strong | |||
|UniProt=P01137 | |UniProt=P01137 | ||
|association_with_transcript=0bp_to_ENST00000221930,NM_000660,uc002oqh.1_5end | |||
|cluster_id=chr19:41859814..41859837,- | |||
|coexpression_cluster_id=C1822 | |||
|description=CAGE_peak_1_at_TGFB1_5end | |||
|id=chr19:41859814..41859837,- | |||
|ontology_enrichment_celltype=CL:0002371!6.72e-31!591;CL:0000988!6.71e-29!182;CL:0000037!9.70e-29!172;CL:0000566!9.70e-29!172;CL:0002032!5.72e-28!165;CL:0000837!5.72e-28!165;CL:0000048!1.20e-27!430;CL:0000723!2.61e-27!436;CL:0000763!7.86e-26!112;CL:0000049!7.86e-26!112;CL:0000144!1.30e-25!625;CL:0000034!2.05e-25!444;CL:0000766!2.83e-25!76;CL:0000738!2.10e-24!140;CL:0000134!9.03e-24!358;CL:0002320!2.16e-23!365;CL:0002087!5.05e-21!119;CL:0000557!5.42e-21!71;CL:0002057!6.73e-21!42;CL:0002031!2.44e-20!124;CL:0000003!3.06e-19!722;CL:0000839!5.84e-19!70;CL:0002194!9.70e-19!63;CL:0000576!9.70e-19!63;CL:0000040!9.70e-19!63;CL:0000559!9.70e-19!63;CL:0002009!1.22e-18!65;CL:0000219!1.97e-17!390;CL:0000860!5.10e-17!45;CL:0000012!2.83e-13!682;CL:0000548!4.80e-13!679;CL:0000004!4.80e-13!679;CL:0000255!4.80e-13!679;CL:0000063!2.09e-11!578;CL:0000115!2.12e-11!35;CL:0000071!1.89e-09!18;CL:0002546!1.89e-09!18;CL:0000222!4.07e-09!119;CL:0002139!8.34e-09!24;CL:0002078!1.86e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.71e-19;33!CL:0002057;7.71e-19;33!CL:0000473;8.47e-17;39!CL:0000234;8.47e-17;39!CL:0000576;1.62e-13;48!CL:0000766;5.97e-13;69!CL:0000763;1.08e-10;100!CL:0000115;5.02e-10;36!CL:0000071;1.86e-09;18!CL:0002139;8.14e-09;24!CL:0002087;1.36e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.10e-31,168;CL:0000988,3.29e-31,177;CL:0002032,1.18e-30,161;CL:0000837,1.18e-30,161;CL:0000766,2.02e-29,72;CL:0000763,4.46e-29,108;CL:0000049,4.46e-29,108;CL:0000048,1.44e-28,427;CL:0000723,3.18e-28,433;CL:0000738,3.99e-27,136;CL:0000034,2.73e-26,441;CL:0000134,5.82e-25,354;CL:0000557,7.93e-25,67;CL:0002320,1.46e-24,361;CL:0002087,9.26e-24,115;CL:0002031,5.96e-23,120;CL:0002194,1.34e-22,59;CL:0000576,1.34e-22,59;CL:0000040,1.34e-22,59;CL:0000559,1.34e-22,59;CL:0000839,1.41e-22,66;CL:0002009,2.10e-22,61;CL:0000473,3.79e-22,48;CL:0000234,3.79e-22,48;CL:0000860,6.73e-21,42;CL:0002057,6.73e-21,42;CL:0000219,2.15e-18,386;CL:0000115,1.30e-11,36;CL:0000071,1.89e-09,18;CL:0002546,1.89e-09,18;CL:0000222,4.79e-09,121;CL:0002139,8.34e-09,24;CL:0002078,1.15e-07,45 | |||
|ontology_enrichment_development_v019=CL:0002057;2.39e-15;42!CL:0002546;1.86e-09;18!CL:0000049;1.30e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.52e-38!216;UBERON:0002193!3.96e-25!112;UBERON:0002390!4.46e-24!102;UBERON:0003061!4.46e-24!102;UBERON:0002384!4.88e-22!375;UBERON:0002371!5.62e-19!80;UBERON:0001474!9.39e-19!86;UBERON:0004535!1.11e-18!110;UBERON:0002405!1.34e-17!115;UBERON:0001009!1.83e-17!113;UBERON:0004872!2.16e-15!84;UBERON:0000055!4.67e-15!69;UBERON:0001981!7.11e-15!60;UBERON:0007500!7.11e-15!60;UBERON:0004537!7.11e-15!60;UBERON:0006965!7.11e-15!60;UBERON:0002204!1.32e-14!167;UBERON:0002049!2.31e-14!79;UBERON:0007798!2.31e-14!79;UBERON:0004765!8.59e-14!101;UBERON:0001434!8.59e-14!101;UBERON:0001637!2.48e-12!42;UBERON:0003509!2.48e-12!42;UBERON:0004572!2.48e-12!42;UBERON:0003914!1.06e-09!118;UBERON:0001986!1.89e-09!18;UBERON:0004638!1.89e-09!18;UBERON:0004852!1.89e-09!18;UBERON:0004573!7.33e-09!33;UBERON:0004571!7.33e-09!33;UBERON:0000487!1.72e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.86e-09;18!UBERON:0001986;1.86e-09;18!UBERON:0004852;1.86e-09;18!UBERON:0007500;2.14e-09;56!UBERON:0001981;2.14e-09;56!UBERON:0004537;2.14e-09;56!UBERON:0001637;2.99e-09;42!UBERON:0003509;2.99e-09;42!UBERON:0004572;2.99e-09;42!UBERON:0000055;1.54e-08;65!UBERON:0004573;3.66e-08;33!UBERON:0004571;3.66e-08;33!UBERON:0003914;1.01e-07;74!UBERON:0000487;1.70e-07;22!UBERON:0002049;8.53e-07;75!UBERON:0007798;8.53e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,6.50e-42,203;UBERON:0002193,2.56e-28,108;UBERON:0002390,2.26e-27,98;UBERON:0003061,2.26e-27,98;UBERON:0002405,3.46e-24,93;UBERON:0002384,3.72e-23,371;UBERON:0002371,2.78e-22,76;UBERON:0001474,7.00e-22,82;UBERON:0000926,2.49e-19,315;UBERON:0004120,2.49e-19,315;UBERON:0006603,2.49e-19,315;UBERON:0004535,4.99e-19,109;UBERON:0004765,1.37e-18,90;UBERON:0001009,8.71e-18,112;UBERON:0004872,9.39e-16,83;UBERON:0002204,1.06e-15,167;UBERON:0001434,1.60e-15,100;UBERON:0000055,1.81e-15,68;UBERON:0007500,2.50e-15,59;UBERON:0001981,2.50e-15,59;UBERON:0004537,2.50e-15,59;UBERON:0006965,2.50e-15,59;UBERON:0002049,1.01e-14,78;UBERON:0007798,1.01e-14,78;UBERON:0001637,2.48e-12,42;UBERON:0003509,2.48e-12,42;UBERON:0004572,2.48e-12,42;UBERON:0003914,5.70e-10,117;UBERON:0004638,1.89e-09,18;UBERON:0001986,1.89e-09,18;UBERON:0004852,1.89e-09,18;UBERON:0004573,7.33e-09,33;UBERON:0004571,7.33e-09,33;UBERON:0000487,1.72e-07,22 | |||
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| ||
|short_description=p1@TGFB1 | |||
}} | }} |
Latest revision as of 05:24, 18 September 2015
Short description: | p1@TGFB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TGFB1_5end |
Coexpression cluster: | C1822_CD14_CD8_Neutrophils_Natural_Renal_Endothelial_acute |
Association with transcript: | 0bp_to_ENST00000221930, NM_000660, uc002oqh.1_5end |
EntrezGene: | TGFB1 |
HGNC: | 11766 |
UniProt: | P01137 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 6.50e-42 | 203 |
hemolymphoid system | 2.56e-28 | 108 |
hematopoietic system | 2.26e-27 | 98 |
blood island | 2.26e-27 | 98 |
immune system | 3.46e-24 | 93 |
connective tissue | 3.72e-23 | 371 |
bone marrow | 2.78e-22 | 76 |
bone element | 7.00e-22 | 82 |
mesoderm | 2.49e-19 | 315 |
mesoderm-derived structure | 2.49e-19 | 315 |
presumptive mesoderm | 2.49e-19 | 315 |
cardiovascular system | 4.99e-19 | 109 |
skeletal element | 1.37e-18 | 90 |
circulatory system | 8.71e-18 | 112 |
splanchnic layer of lateral plate mesoderm | 9.39e-16 | 83 |
musculoskeletal system | 1.06e-15 | 167 |
skeletal system | 1.60e-15 | 100 |
vessel | 1.81e-15 | 68 |
epithelial tube open at both ends | 2.50e-15 | 59 |
blood vessel | 2.50e-15 | 59 |
blood vasculature | 2.50e-15 | 59 |
vascular cord | 2.50e-15 | 59 |
vasculature | 1.01e-14 | 78 |
vascular system | 1.01e-14 | 78 |
artery | 2.48e-12 | 42 |
arterial blood vessel | 2.48e-12 | 42 |
arterial system | 2.48e-12 | 42 |
epithelial tube | 5.70e-10 | 117 |
blood vessel endothelium | 1.89e-09 | 18 |
endothelium | 1.89e-09 | 18 |
cardiovascular system endothelium | 1.89e-09 | 18 |
systemic artery | 7.33e-09 | 33 |
systemic arterial system | 7.33e-09 | 33 |
simple squamous epithelium | 1.72e-07 | 22 |