FFCP PHASE1:Hg19::chr1:161059380..161059392,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81607 | |EntrezGene=81607 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19688 | |HGNC=19688 | ||
|TSSclassifier=strong | |||
|UniProt=Q96NY8 | |UniProt=Q96NY8 | ||
|association_with_transcript=0bp_to_ENST00000368012,NM_030916,uc001fxo.2_5end | |association_with_transcript=0bp_to_ENST00000368012,NM_030916,uc001fxo.2_5end | ||
|cluster_id=chr1:161059380..161059392,- | |||
|coexpression_cluster_id=C1369 | |coexpression_cluster_id=C1369 | ||
|description=CAGE_peak_4_at_PVRL4_5end | |description=CAGE_peak_4_at_PVRL4_5end | ||
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|ontology_enrichment_celltype=CL:0002076!3.53e-15!43;CL:0000066!2.82e-12!254;CL:0000223!8.02e-12!59;CL:0002368!2.92e-10!13;CL:0000039!4.08e-07!7;CL:0000586!4.08e-07!7;CL:0002251!9.60e-07!21 | |ontology_enrichment_celltype=CL:0002076!3.53e-15!43;CL:0000066!2.82e-12!254;CL:0000223!8.02e-12!59;CL:0002368!2.92e-10!13;CL:0000039!4.08e-07!7;CL:0000586!4.08e-07!7;CL:0002251!9.60e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.87e-11;3!CL:0000313;1.32e-08;1!CL:0000244;1.99e-08;4!CL:0000731;1.99e-08;4!CL:0002537;4.00e-07;5!CL:0000349;9.94e-07;19 | |ontology_enrichment_celltype_v019=CL:0002541;1.87e-11;3!CL:0000313;1.32e-08;1!CL:0000244;1.99e-08;4!CL:0000731;1.99e-08;4!CL:0002537;4.00e-07;5!CL:0000349;9.94e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.87e-11,3;CL:0000313,7.75e-09,1;CL:0000244,1.99e-08,4;CL:0000731,1.99e-08,4;CL:0002537,3.89e-07,5;CL:0000349,9.80e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0003124;4.52e-09;1!UBERON:0000358;6.39e-09;1!UBERON:0009143;6.39e-09;1 | |ontology_enrichment_development_v019=UBERON:0003124;4.52e-09;1!UBERON:0000358;6.39e-09;1!UBERON:0009143;6.39e-09;1 | ||
|ontology_enrichment_disease=DOID:305!7.12e-12!106;DOID:5093!1.13e-08!4;DOID:1612!1.13e-08!4;DOID:0050687!1.15e-08!143;DOID:299!1.68e-08!25;DOID:1749!3.74e-07!14 | |ontology_enrichment_disease=DOID:305!7.12e-12!106;DOID:5093!1.13e-08!4;DOID:1612!1.13e-08!4;DOID:0050687!1.15e-08!143;DOID:299!1.68e-08!25;DOID:1749!3.74e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;1.32e-08;1!DOID:2152;1.32e-08;1!DOID:3149;1.32e-08;1 | |ontology_enrichment_disease_v019=DOID:3151;1.32e-08;1!DOID:2152;1.32e-08;1!DOID:3149;1.32e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:2152,7.75e-09,1;DOID:3151,2.22e-08,1;DOID:3149,2.22e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.89e-14!169;UBERON:0000925!4.89e-14!169;UBERON:0006595!4.89e-14!169;UBERON:0000464!7.36e-11!104;UBERON:0001004!1.84e-10!72;UBERON:0000077!5.78e-10!130;UBERON:0001007!9.48e-10!155;UBERON:0001555!9.48e-10!155;UBERON:0007026!9.48e-10!155;UBERON:0000466!1.29e-09!126;UBERON:0002294!7.43e-09!7;UBERON:0001173!7.43e-09!7;UBERON:0004912!7.43e-09!7;UBERON:0004921!2.59e-08!129;UBERON:0004185!2.59e-08!129;UBERON:0000065!6.80e-08!53;UBERON:0000161!1.65e-07!35;UBERON:0006554!3.62e-07!44;UBERON:0001008!6.32e-07!45 | |ontology_enrichment_uberon=UBERON:0004119!4.89e-14!169;UBERON:0000925!4.89e-14!169;UBERON:0006595!4.89e-14!169;UBERON:0000464!7.36e-11!104;UBERON:0001004!1.84e-10!72;UBERON:0000077!5.78e-10!130;UBERON:0001007!9.48e-10!155;UBERON:0001555!9.48e-10!155;UBERON:0007026!9.48e-10!155;UBERON:0000466!1.29e-09!126;UBERON:0002294!7.43e-09!7;UBERON:0001173!7.43e-09!7;UBERON:0004912!7.43e-09!7;UBERON:0004921!2.59e-08!129;UBERON:0004185!2.59e-08!129;UBERON:0000065!6.80e-08!53;UBERON:0000161!1.65e-07!35;UBERON:0006554!3.62e-07!44;UBERON:0001008!6.32e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.06e-12;10!UBERON:0000158;1.06e-12;10!UBERON:0003124;1.87e-11;3!UBERON:0000920;1.87e-11;3!UBERON:0000478;3.99e-11;24!UBERON:0002372;1.32e-08;1!UBERON:0004911;1.32e-08;1!UBERON:0001961;1.32e-08;1!UBERON:0001744;1.32e-08;1!UBERON:0001042;1.32e-08;1!UBERON:0001735;1.32e-08;1!UBERON:0000365;6.64e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0005631;1.06e-12;10!UBERON:0000158;1.06e-12;10!UBERON:0003124;1.87e-11;3!UBERON:0000920;1.87e-11;3!UBERON:0000478;3.99e-11;24!UBERON:0002372;1.32e-08;1!UBERON:0004911;1.32e-08;1!UBERON:0001961;1.32e-08;1!UBERON:0001744;1.32e-08;1!UBERON:0001042;1.32e-08;1!UBERON:0001735;1.32e-08;1!UBERON:0000365;6.64e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.32e-14,14;UBERON:0000158,9.32e-14,14;UBERON:0000920,1.87e-11,3;UBERON:0000478,3.96e-11,24;UBERON:0003124,1.34e-10,7;UBERON:0004911,7.75e-09,1;UBERON:0002372,8.36e-09,1;UBERON:0001961,8.36e-09,1;UBERON:0001744,8.36e-09,1;UBERON:0001735,8.36e-09,1;UBERON:0000365,6.65e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0.739508020333575,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0.93733833986777,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56537681191024,0,0,0,0,1.15523005656622,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,2.26690225624989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,0,3.10674542563371,0,3.36942951335251,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81991175580304,0,4.60741053148848,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0.0898683511473268,0.179021174675609,0,1.28236427328014,0,0,0,0,0,0.260427761085233,0.962059999958153,0,0.1137934482855,1.01701460117107,0.709163045303809,0,0,0,0,0,0,0,0,0,0,1.39423744278603,0.384751292518985,0,0.69169171316418,1.43612231055635,0.977826347298073,6.38002319463839,0,11.1937302963913,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,0.0979923974143777,0,0.17472666824203,0,0,0,0,2.81268147816416,0,0.677942222341597,0,0,0,0.195551382734803,0.240476460754601,0.640358984218058,0,0.288180834308212,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,3.86900977278975,0,1.0063040627978,0.0788057072991982,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.979156554036111,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,0.366857197043358,0,0,0,0,0,0,0,0.523813388962845,0,0.739280431085226,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,3.193285325855,0,0,0,0,0,0.333694205676207,0.549451649953598,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0.17071847709395,2.07377898544228,0,0,0,0.423387050190929,0,0,0,1.67783147696688,0.098150233615243,0.243835849964539,0,0,0,0.971421986118279,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,1.60698544745092,1.05868461514708,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0,0,0,0,0,0,0.426467963801962,0,0,0.124149428591716,0,0,0,1.08858373948481,0.342233301085281,1.6164492723501,0.502055437748735,0,0.0814032686109745,0,0,0,2.34640942403454,0.244482888365733,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0.739508020333575,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0.93733833986777,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56537681191024,0,0,0,0,1.15523005656622,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,2.26690225624989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,0,3.10674542563371,0,3.36942951335251,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81991175580304,0,4.60741053148848,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0.0898683511473268,0.179021174675609,0,1.28236427328014,0,0,0,0,0,0.260427761085233,0.962059999958153,0,0.1137934482855,1.01701460117107,0.709163045303809,0,0,0,0,0,0,0,0,0,0,1.39423744278603,0.384751292518985,0,0.69169171316418,1.43612231055635,0.977826347298073,6.38002319463839,0,11.1937302963913,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,0.0979923974143777,0,0.17472666824203,0,0,0,0,2.81268147816416,0,0.677942222341597,0,0,0,0.195551382734803,0.240476460754601,0.640358984218058,0,0.288180834308212,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,3.86900977278975,0,1.0063040627978,0.0788057072991982,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.979156554036111,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,0.366857197043358,0,0,0,0,0,0,0,0.523813388962845,0,0.739280431085226,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,3.193285325855,0,0,0,0,0,0.333694205676207,0.549451649953598,0,0.840816489941367,0,0,0,0,0,0,0,0,0,0.17071847709395,2.07377898544228,0,0,0,0.423387050190929,0,0,0,1.67783147696688,0.098150233615243,0.243835849964539,0,0,0,0.971421986118279,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,1.60698544745092,1.05868461514708,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407955318967927,0.26721740526556,0,0,0,0,0,0,0.426467963801962,0,0,0.124149428591716,0,0,0,1.08858373948481,0.342233301085281,1.6164492723501,0.502055437748735,0,0.0814032686109745,0,0,0,2.34640942403454,0.244482888365733,0,0,0,0 | ||
|short_description=p4@PVRL4 | |short_description=p4@PVRL4 | ||
}} | }} |
Latest revision as of 04:38, 18 September 2015
Short description: | p4@PVRL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PVRL4_5end |
Coexpression cluster: | C1369_amniotic_immature_skin_salivary_chorionic_tongue_esophagus |
Association with transcript: | 0bp_to_ENST00000368012, NM_030916, uc001fxo.2_5end |
EntrezGene: | PVRL4 |
HGNC: | 19688 |
UniProt: | Q96NY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.87e-11 | 3 |
serous secreting cell | 7.75e-09 | 1 |
transitional epithelial cell | 1.99e-08 | 4 |
urothelial cell | 1.99e-08 | 4 |
amnion mesenchymal stem cell | 3.89e-07 | 5 |
extraembryonic cell | 9.80e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 9.32e-14 | 14 |
membranous layer | 9.32e-14 | 14 |
egg chorion | 1.87e-11 | 3 |
extraembryonic structure | 3.96e-11 | 24 |
chorion | 1.34e-10 | 7 |
epithelium of female gonad | 7.75e-09 | 1 |
tonsil | 8.36e-09 | 1 |
mucosa-associated lymphoid tissue | 8.36e-09 | 1 |
lymphoid tissue | 8.36e-09 | 1 |
tonsillar ring | 8.36e-09 | 1 |
urothelium | 6.65e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 7.75e-09 | 1 |
skin squamous cell carcinoma | 2.22e-08 | 1 |
keratoacanthoma | 2.22e-08 | 1 |