FFCP PHASE1:Hg19::chr13:92712093..92712096,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=42575 | |HGNC=42575 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000516699_5end | |association_with_transcript=0bp_to_ENST00000516699_5end | ||
|cluster_id=chr13:92712093..92712096,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_RNU4ATAC3P_5end | |description=CAGE_peak_1_at_RNU4ATAC3P_5end | ||
|id=chr13:92712093..92712096,+ | |id=chr13:92712093..92712096,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.40e-21!42;CL:0000860!3.04e-20!45;CL:0002009!1.65e-12!65;CL:0002194!2.53e-12!63;CL:0000576!2.53e-12!63;CL:0000040!2.53e-12!63;CL:0000559!2.53e-12!63;CL:0000557!7.91e-11!71;CL:0000839!2.77e-10!70;CL:0000766!6.63e-10!76;CL:0002087!6.96e-08!119;CL:0000763!1.29e-07!112;CL:0000049!1.29e-07!112;CL:0002031!7.67e-07!124 | |ontology_enrichment_celltype=CL:0002057!1.40e-21!42;CL:0000860!3.04e-20!45;CL:0002009!1.65e-12!65;CL:0002194!2.53e-12!63;CL:0000576!2.53e-12!63;CL:0000040!2.53e-12!63;CL:0000559!2.53e-12!63;CL:0000557!7.91e-11!71;CL:0000839!2.77e-10!70;CL:0000766!6.63e-10!76;CL:0002087!6.96e-08!119;CL:0000763!1.29e-07!112;CL:0000049!1.29e-07!112;CL:0002031!7.67e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.72e-41;33!CL:0002057;9.72e-41;33!CL:0000473;8.22e-31;39!CL:0000234;8.22e-31;39!CL:0000576;2.90e-27;48!CL:0000766;3.84e-18;69!CL:0002393;1.45e-11;6!CL:0002397;1.45e-11;6!CL:0002379;2.12e-08;1!CL:0002087;4.62e-08;104!CL:0000763;3.98e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.68e-52,42;CL:0002057,3.68e-52,42;CL:0000473,3.19e-45,48;CL:0000234,3.19e-45,48;CL:0002194,1.67e-35,59;CL:0000576,1.67e-35,59;CL:0000040,1.67e-35,59;CL:0000559,1.67e-35,59;CL:0002009,3.00e-34,61;CL:0000839,1.94e-31,66;CL:0000557,6.31e-31,67;CL:0000766,1.42e-28,72;CL:0000763,5.33e-18,108;CL:0000049,5.33e-18,108;CL:0002087,1.05e-16,115;CL:0002031,7.18e-16,120;CL:0000738,1.30e-13,136;CL:0002032,5.64e-11,161;CL:0000837,5.64e-11,161;CL:0000037,2.24e-10,168;CL:0000988,1.12e-09,177;CL:0002379,3.53e-08,1;CL:0002393,6.44e-08,9;CL:0002397,6.44e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.26e-36;42 | |||
|ontology_enrichment_disease=DOID:162!4.22e-07!235;DOID:14566!4.26e-07!239 | |ontology_enrichment_disease=DOID:162!4.22e-07!235;DOID:14566!4.26e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:3620;2.12e-08;1!DOID:3565;2.12e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,3.53e-08,1;DOID:3565,3.53e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!4.77e-11!80;UBERON:0004765!1.23e-10!101;UBERON:0001434!1.23e-10!101;UBERON:0001474!1.36e-10!86;UBERON:0002390!1.60e-08!102;UBERON:0003061!1.60e-08!102;UBERON:0002204!2.95e-07!167;UBERON:0002405!5.57e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.67e-30,76;UBERON:0001474,1.01e-27,82;UBERON:0004765,5.72e-25,90;UBERON:0002405,4.67e-24,93;UBERON:0002390,1.17e-22,98;UBERON:0003061,1.17e-22,98;UBERON:0001434,3.86e-22,100;UBERON:0002193,3.00e-20,108;UBERON:0002204,1.26e-16,167;UBERON:0003081,5.46e-13,203;UBERON:0000926,8.53e-08,315;UBERON:0004120,8.53e-08,315;UBERON:0006603,8.53e-08,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.662794751455832,0,1.20538905604795,0,0,0,0,0,0,0.136874425072884,0,0.229240217243854,0.164201178899891,0.236132343941038,0,0,0.619264493264304,1.83884244895785,0,0.739508020333575,0.0774672005803016,0.142169232487422,0.587200878669695,2.76997704265939,1.60435557976113,2.38711957787437,0,0,0,0.290796477559129,0,0.485168122375632,0.929716147622738,1.23350366406548,0.619412741790207,2.3015391385772,1.5369642391746,0.945928919554341,2.75796544589295,1.29096936716765,6.77132432971709,0.376484679085209,0.545812300115692,0.449446968890169,1.83650335422542,0.641858054152187,3.19668562899521,0.989553900560148,0.797854630486527,0,1.45104619314292,2.8369261234557,1.86846674698672,2.51248665256743,1.0429658368404,0.868755378820466,0,1.47311054395026,1.26584954976354,0,0.212604299965044,0,0.336985893439485,0,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0.328875809207352,0.276350017785848,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0.81014194788176,0,0.673588117878509,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0.612975591598039,0,0.113432183160021,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0.339121184620975,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0.473227200159376,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0.300343057843917,0,0,0.43596006883328,0,0.129271715757778,0,0,0,0,0,1.41849132023278,0.532844358032199,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0,0.448340575974109,0.197030760201927,0.862510299438069,0.77005821767849,0,0,0.773288812777695,0,0,0,0,0.414415513436035,0,0,0.271265023699736,0,0,0.315404830067869,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0.533637789017222,0,0,0,0.248107807818777,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.697262270759755,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616194468458578,0.614014698904518,0.413509717453592,0,0.290033387828457,0.0852266274161009,0,0,0.192190067365106,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0.286249773483982,0,0,0,0,0,0,1.56989728039846,0.179872457583315,0.54907405947211,0,0,0,0.842516912477962,0,0,0,0,0.282810863907425,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0.213648142254946,0.962479855263359,0.245040215981032,0,0.28853842595289,0.0711418433484141,0,0.199579371432817,0,0.635020748171649,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0.687010689511529,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0.111443384277478,0.568272293612826,0,0,0,0,0.140669416410513,0.111308705022906,0.329607748453519,0,0.19924798825107,0,0.503865495708552,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,1.5625665665114,0.437299999980979,0,0.227586896570999,0.254253650292766,0.236387681767936,0.344743373241465,0.583209226766509,0.173624994933292,0,0,0,0.552896299656123,0,0,0.21787692703798,0,0,0.113942055847001,0,0,0.108647371922008,0,0,0,0,0.156980256395025,0,0,0.19606253431774,0,0,0.635746315921515,0,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0.067401132980677,0,0,0.364909578431332,0,0,0.394584402849391,0,0,0,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0,0,0.0870592065804026,0,0.343972064943233,0.19351266257817,0,0,0,0,0.225980740780532,0.548167698587004,0,0,0,0,0,0.19980960958213,0,0.343609788497747,0,0.576219191952599,0,0.471388069233591,0,0.104602846312333,0.611989305817931,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.202210631562555,0,0.169346664131569,0,0.272406812223151,0.160753148465019,0.137539436597234,0,0,0.77380195455795,0,0,0,0,0,0.179287339332845,0,0.714695326373367,0,0.25426853765475,0,0,0.326587360109409,0,0.574647645245373,0,0,0.293104467356165,0,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0,0.138348634936231,0,0.151649117541648,0.285465333544967,1.17632909849086,0.936669811613763,0.144921028610825,0.149254802886874,0.467426619694449,0,0,0.251567901752575,0,0,0,0.15543720058278,0.147855149989634,0,0.449803112163605,0,0.414706207840855,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0,0.398095888698616,2.40016658797892,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0.303859956177382,0.1382584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| ||
|short_description=p1@RNU4ATAC3P | |short_description=p1@RNU4ATAC3P | ||
}} | }} |
Latest revision as of 04:33, 18 September 2015
Short description: | p1@RNU4ATAC3P |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNU4ATAC3P_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000516699_5end |
EntrezGene: | NA |
HGNC: | 42575 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.68e-52 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.68e-52 | 42 |
defensive cell | 3.19e-45 | 48 |
phagocyte | 3.19e-45 | 48 |
monopoietic cell | 1.67e-35 | 59 |
monocyte | 1.67e-35 | 59 |
monoblast | 1.67e-35 | 59 |
promonocyte | 1.67e-35 | 59 |
macrophage dendritic cell progenitor | 3.00e-34 | 61 |
myeloid lineage restricted progenitor cell | 1.94e-31 | 66 |
granulocyte monocyte progenitor cell | 6.31e-31 | 67 |
myeloid leukocyte | 1.42e-28 | 72 |
myeloid cell | 5.33e-18 | 108 |
common myeloid progenitor | 5.33e-18 | 108 |
nongranular leukocyte | 1.05e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 7.18e-16 | 120 |
leukocyte | 1.30e-13 | 136 |
hematopoietic oligopotent progenitor cell | 5.64e-11 | 161 |
hematopoietic multipotent progenitor cell | 5.64e-11 | 161 |
hematopoietic stem cell | 2.24e-10 | 168 |
hematopoietic cell | 1.12e-09 | 177 |
meningothelial cell | 3.53e-08 | 1 |
intermediate monocyte | 6.44e-08 | 9 |
CD14-positive, CD16-positive monocyte | 6.44e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.67e-30 | 76 |
bone element | 1.01e-27 | 82 |
skeletal element | 5.72e-25 | 90 |
immune system | 4.67e-24 | 93 |
hematopoietic system | 1.17e-22 | 98 |
blood island | 1.17e-22 | 98 |
skeletal system | 3.86e-22 | 100 |
hemolymphoid system | 3.00e-20 | 108 |
musculoskeletal system | 1.26e-16 | 167 |
lateral plate mesoderm | 5.46e-13 | 203 |
mesoderm | 8.53e-08 | 315 |
mesoderm-derived structure | 8.53e-08 | 315 |
presumptive mesoderm | 8.53e-08 | 315 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 3.53e-08 | 1 |
meningioma | 3.53e-08 | 1 |