FFCP PHASE1:Hg19::chr11:47236489..47236567,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:47236489..47236567,+
|short_description=p2@DDB2
|description=CAGE_peak_2_at_DDB2_5end
|association_with_transcript=0bp_to_ENST00000256996,ENST00000378600,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1643 | |EntrezGene=1643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2718 | |HGNC=2718 | ||
|TSSclassifier=strong | |||
|UniProt=Q92466 | |UniProt=Q92466 | ||
|association_with_transcript=0bp_to_ENST00000256996,ENST00000378600,ENST00000378601,ENST00000378603,NM_000107,uc001neb.2,uc001nec.2,uc001ned.2,uc001nee.2,uc009yli.1_5end | |||
|cluster_id=chr11:47236489..47236567,+ | |||
|description=CAGE_peak_2_at_DDB2_5end | |||
|id=chr11:47236489..47236567,+ | |||
|ontology_enrichment_celltype=CL:0000115!1.62e-14!35;CL:0002371!6.91e-14!591;CL:0000003!8.13e-14!722;CL:0002139!1.04e-13!24;CL:0002078!2.00e-13!44;CL:0000144!1.41e-12!625;CL:0000071!2.66e-11!18;CL:0002546!2.66e-11!18;CL:0000048!1.57e-10!430;CL:0000219!5.00e-10!390;CL:0000034!1.03e-09!444;CL:0000213!1.52e-09!57;CL:0000215!1.52e-09!57;CL:0000012!1.70e-09!682;CL:0000723!2.55e-09!436;CL:0000548!3.09e-09!679;CL:0000004!3.09e-09!679;CL:0000255!3.09e-09!679;CL:0000134!2.69e-08!358;CL:0002320!3.65e-08!365;CL:0000222!4.98e-08!119;CL:0000055!6.27e-08!180;CL:0000057!6.97e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.11e-13;24!CL:0000115;5.78e-13;36!CL:0000071;3.01e-11;18!CL:0002078;8.35e-10;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.98e-15,36;CL:0002078,5.35e-14,45;CL:0002139,1.04e-13,24;CL:0000071,2.66e-11,18;CL:0002546,2.66e-11,18;CL:0000213,5.11e-10,58;CL:0000215,5.11e-10,58;CL:0000048,1.95e-09,427;CL:0000219,4.21e-09,386;CL:0000034,1.14e-08,441;CL:0000723,2.66e-08,433;CL:0000057,2.89e-08,76;CL:0000222,3.78e-08,121;CL:0000134,1.81e-07,354;CL:0002320,2.41e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002546;3.01e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.60e-14!69;UBERON:0003081!1.42e-13!216;UBERON:0002049!1.23e-12!79;UBERON:0007798!1.23e-12!79;UBERON:0001981!1.79e-11!60;UBERON:0007500!1.79e-11!60;UBERON:0004537!1.79e-11!60;UBERON:0006965!1.79e-11!60;UBERON:0001986!2.66e-11!18;UBERON:0004638!2.66e-11!18;UBERON:0004852!2.66e-11!18;UBERON:0004535!5.39e-11!110;UBERON:0001009!3.20e-10!113;UBERON:0004872!7.68e-10!84;UBERON:0006914!1.80e-09!25;UBERON:0000487!2.95e-09!22;UBERON:0002384!6.85e-08!375;UBERON:0001637!1.75e-07!42;UBERON:0003509!1.75e-07!42;UBERON:0004572!1.75e-07!42;UBERON:0003914!2.00e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.01e-11;18!UBERON:0001986;3.01e-11;18!UBERON:0004852;3.01e-11;18!UBERON:0006914;1.74e-09;25!UBERON:0000487;3.25e-09;22!UBERON:0000055;1.38e-08;65!UBERON:0007500;1.16e-07;56!UBERON:0001981;1.16e-07;56!UBERON:0004537;1.16e-07;56!UBERON:0003914;1.83e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,5.05e-14,68;UBERON:0002049,3.53e-12,78;UBERON:0007798,3.53e-12,78;UBERON:0003081,2.48e-11,203;UBERON:0004638,2.66e-11,18;UBERON:0001986,2.66e-11,18;UBERON:0004852,2.66e-11,18;UBERON:0007500,5.30e-11,59;UBERON:0001981,5.30e-11,59;UBERON:0004537,5.30e-11,59;UBERON:0006965,5.30e-11,59;UBERON:0004535,1.32e-10,109;UBERON:0001009,7.56e-10,112;UBERON:0006914,1.80e-09,25;UBERON:0004872,1.94e-09,83;UBERON:0000487,2.95e-09,22;UBERON:0000926,3.46e-09,315;UBERON:0004120,3.46e-09,315;UBERON:0006603,3.46e-09,315;UBERON:0003914,1.22e-07,117;UBERON:0001637,1.75e-07,42;UBERON:0003509,1.75e-07,42;UBERON:0004572,1.75e-07,42;UBERON:0002384,4.35e-07,371 | |||
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| ||
|short_description=p2@DDB2 | |||
}} | }} |
Latest revision as of 04:03, 18 September 2015
Short description: | p2@DDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DDB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000256996, ENST00000378600, ENST00000378601, ENST00000378603, NM_000107, uc001neb.2, uc001nec.2, uc001ned.2, uc001nee.2, uc009yli.1_5end |
EntrezGene: | DDB2 |
HGNC: | 2718 |
UniProt: | Q92466 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.98e-15 | 36 |
meso-epithelial cell | 5.35e-14 | 45 |
endothelial cell of vascular tree | 1.04e-13 | 24 |
blood vessel endothelial cell | 2.66e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.66e-11 | 18 |
lining cell | 5.11e-10 | 58 |
barrier cell | 5.11e-10 | 58 |
multi fate stem cell | 1.95e-09 | 427 |
motile cell | 4.21e-09 | 386 |
stem cell | 1.14e-08 | 441 |
somatic stem cell | 2.66e-08 | 433 |
fibroblast | 2.89e-08 | 76 |
mesodermal cell | 3.78e-08 | 121 |
mesenchymal cell | 1.81e-07 | 354 |
connective tissue cell | 2.41e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
vessel | 5.05e-14 | 68 |
vasculature | 3.53e-12 | 78 |
vascular system | 3.53e-12 | 78 |
lateral plate mesoderm | 2.48e-11 | 203 |
blood vessel endothelium | 2.66e-11 | 18 |
endothelium | 2.66e-11 | 18 |
cardiovascular system endothelium | 2.66e-11 | 18 |
epithelial tube open at both ends | 5.30e-11 | 59 |
blood vessel | 5.30e-11 | 59 |
blood vasculature | 5.30e-11 | 59 |
vascular cord | 5.30e-11 | 59 |
cardiovascular system | 1.32e-10 | 109 |
circulatory system | 7.56e-10 | 112 |
squamous epithelium | 1.80e-09 | 25 |
splanchnic layer of lateral plate mesoderm | 1.94e-09 | 83 |
simple squamous epithelium | 2.95e-09 | 22 |
mesoderm | 3.46e-09 | 315 |
mesoderm-derived structure | 3.46e-09 | 315 |
presumptive mesoderm | 3.46e-09 | 315 |
epithelial tube | 1.22e-07 | 117 |
artery | 1.75e-07 | 42 |
arterial blood vessel | 1.75e-07 | 42 |
arterial system | 1.75e-07 | 42 |
connective tissue | 4.35e-07 | 371 |