FFCP PHASE1:Hg19::chr4:5889989..5890000,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1400 | |EntrezGene=1400 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2365 | |HGNC=2365 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=197bp_to_ENST00000506216_5end | |association_with_transcript=197bp_to_ENST00000506216_5end | ||
|cluster_id=chr4:5889989..5890000,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_7_at_CRMP1_5end | |description=CAGE_peak_7_at_CRMP1_5end | ||
|id=chr4:5889989..5890000,- | |id=chr4:5889989..5890000,- | ||
|ontology_enrichment_celltype=CL:0000047!7.48e-16!8;CL:0002319!2.67e-14!25;CL:0000540!2.43e-12!6;CL:0000031!2.43e-12!6;CL:0000404!2.43e-12!6;CL:0000133!6.71e-12!59;CL:0002322!1.24e-09!5;CL:0000221!7.94e-09!71 | |ontology_enrichment_celltype=CL:0000047!7.48e-16!8;CL:0002319!2.67e-14!25;CL:0000540!2.43e-12!6;CL:0000031!2.43e-12!6;CL:0000404!2.43e-12!6;CL:0000133!6.71e-12!59;CL:0002322!1.24e-09!5;CL:0000221!7.94e-09!71 | ||
|ontology_enrichment_celltype_v019=CL:0000540;3.38e-27;6!CL:0000404;3.38e-27;6!CL:0000047;1.74e-20;2!CL:0002319;1.89e-17;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.17e-44,8;CL:0000540,3.50e-27,6;CL:0000031,3.50e-27,6;CL:0000404,3.50e-27,6;CL:0002319,2.15e-17,25;CL:0000133,2.56e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;3.38e-27;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.77e-46!82;UBERON:0005743!5.97e-45!86;UBERON:0000073!7.15e-45!94;UBERON:0001016!7.15e-45!94;UBERON:0001049!1.27e-35!57;UBERON:0005068!1.27e-35!57;UBERON:0006241!1.27e-35!57;UBERON:0007135!1.27e-35!57;UBERON:0002780!4.69e-34!41;UBERON:0001890!4.69e-34!41;UBERON:0006240!4.69e-34!41;UBERON:0003080!5.03e-33!42;UBERON:0000955!1.15e-31!69;UBERON:0006238!1.15e-31!69;UBERON:0002616!6.49e-30!59;UBERON:0001893!1.90e-29!34;UBERON:0003075!2.59e-29!86;UBERON:0007284!2.59e-29!86;UBERON:0002346!3.98e-29!90;UBERON:0002791!4.27e-28!33;UBERON:0003056!1.31e-27!61;UBERON:0002020!2.25e-27!34;UBERON:0003528!2.25e-27!34;UBERON:0001869!3.44e-27!32;UBERON:0000924!4.01e-27!173;UBERON:0006601!4.01e-27!173;UBERON:0004121!6.63e-27!169;UBERON:0000956!9.19e-23!25;UBERON:0000203!9.19e-23!25;UBERON:0000033!2.47e-21!123;UBERON:0002619!7.20e-21!22;UBERON:0000153!1.08e-19!129;UBERON:0007811!1.08e-19!129;UBERON:0001950!8.51e-18!20;UBERON:0007023!7.05e-14!115;UBERON:0000064!3.69e-08!219;UBERON:0001871!6.28e-08!7;UBERON:0000200!4.28e-07!6;UBERON:0000922!5.09e-07!612;UBERON:0000025!5.61e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;6.22e-12;20!UBERON:0002619;6.94e-11;22!UBERON:0000956;1.30e-09;25!UBERON:0000203;1.30e-09;25!UBERON:0002021;5.49e-09;5!UBERON:0002791;2.79e-07;32!UBERON:0001869;3.25e-07;32!UBERON:0000922;6.17e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.49e-15,81;UBERON:0001016,7.47e-14,89;UBERON:0001950,5.80e-12,20;UBERON:0002619,6.52e-11,22;UBERON:0000956,1.23e-09,25;UBERON:0000203,1.23e-09,25;UBERON:0004121,4.27e-09,171;UBERON:0000924,4.27e-09,171;UBERON:0006601,4.27e-09,171;UBERON:0002021,5.72e-09,5;UBERON:0002791,1.47e-07,32;UBERON:0001869,1.47e-07,32;UBERON:0003528,4.06e-07,34;UBERON:0002020,4.06e-07,34;UBERON:0001893,4.06e-07,34 | |||
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| ||
|short_description=p7@CRMP1 | |short_description=p7@CRMP1 | ||
}} | }} |
Latest revision as of 03:57, 18 September 2015
Short description: | p7@CRMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CRMP1_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 197bp_to_ENST00000506216_5end |
EntrezGene: | CRMP1 |
HGNC: | 2365 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.17e-44 | 8 |
neuron | 3.50e-27 | 6 |
neuroblast | 3.50e-27 | 6 |
electrically signaling cell | 3.50e-27 | 6 |
neural cell | 2.15e-17 | 25 |
neurectodermal cell | 2.56e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.49e-15 | 81 |
nervous system | 7.47e-14 | 89 |
neocortex | 5.80e-12 | 20 |
regional part of cerebral cortex | 6.52e-11 | 22 |
cerebral cortex | 1.23e-09 | 25 |
pallium | 1.23e-09 | 25 |
ectoderm-derived structure | 4.27e-09 | 171 |
ectoderm | 4.27e-09 | 171 |
presumptive ectoderm | 4.27e-09 | 171 |
occipital lobe | 5.72e-09 | 5 |
regional part of telencephalon | 1.47e-07 | 32 |
cerebral hemisphere | 1.47e-07 | 32 |
brain grey matter | 4.06e-07 | 34 |
gray matter | 4.06e-07 | 34 |
telencephalon | 4.06e-07 | 34 |