FFCP PHASE1:Hg19::chr1:43205948..43205957,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=149461 | |EntrezGene=149461 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2040 | |HGNC=2040 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N6F1,F5H5P9,B7Z5I2 | |UniProt=Q8N6F1,F5H5P9,B7Z5I2 | ||
|association_with_transcript=-23bp_to_ENST00000296387,ENST00000539749,NM_001123395,NM_001185117,NM_148960,uc001cht.1,uc001chu.2,uc010ojv.1_5end | |association_with_transcript=-23bp_to_ENST00000296387,ENST00000539749,NM_001123395,NM_001185117,NM_148960,uc001cht.1,uc001chu.2,uc010ojv.1_5end | ||
|cluster_id=chr1:43205948..43205957,- | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_2_at_CLDN19_5end | |description=CAGE_peak_2_at_CLDN19_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!5.66e-16!5;CL:0002541!4.07e-11!3 | |ontology_enrichment_celltype=CL:0002322!5.66e-16!5;CL:0002541!4.07e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.89e-50;3!CL:0000349;1.53e-08;19!CL:0002586;9.64e-07;3 | |ontology_enrichment_celltype_v019=CL:0002541;1.89e-50;3!CL:0000349;1.53e-08;19!CL:0002586;9.64e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.23e-50,3;CL:0000349,1.57e-08,19;CL:0002586,9.12e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.22e-17;1!UBERON:0006241;6.69e-07;3!UBERON:0003057;6.69e-07;3!UBERON:0003056;7.70e-07;3 | |ontology_enrichment_development_v019=UBERON:0003124;1.22e-17;1!UBERON:0006241;6.69e-07;3!UBERON:0003057;6.69e-07;3!UBERON:0003056;7.70e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!2.58e-13!8;UBERON:0000476!4.07e-11!3;UBERON:0000920!4.07e-11!3;UBERON:0000966!4.60e-11!5;UBERON:0005388!4.60e-11!5;UBERON:0001802!4.60e-11!5;UBERON:0002240!2.86e-10!3;UBERON:0001896!8.95e-10!3;UBERON:0005290!8.95e-10!3;UBERON:0010096!8.95e-10!3;UBERON:0003076!4.44e-09!15;UBERON:0003057!4.44e-09!15;UBERON:0003124!4.40e-08!7;UBERON:0002950!1.41e-07!2;UBERON:0001891!1.41e-07!2;UBERON:0009616!1.41e-07!2;UBERON:0003075!4.63e-07!86;UBERON:0007284!4.63e-07!86;UBERON:0000970!6.69e-07!20 | |ontology_enrichment_uberon=UBERON:0002298!2.58e-13!8;UBERON:0000476!4.07e-11!3;UBERON:0000920!4.07e-11!3;UBERON:0000966!4.60e-11!5;UBERON:0005388!4.60e-11!5;UBERON:0001802!4.60e-11!5;UBERON:0002240!2.86e-10!3;UBERON:0001896!8.95e-10!3;UBERON:0005290!8.95e-10!3;UBERON:0010096!8.95e-10!3;UBERON:0003076!4.44e-09!15;UBERON:0003057!4.44e-09!15;UBERON:0003124!4.40e-08!7;UBERON:0002950!1.41e-07!2;UBERON:0001891!1.41e-07!2;UBERON:0009616!1.41e-07!2;UBERON:0003075!4.63e-07!86;UBERON:0007284!4.63e-07!86;UBERON:0000970!6.69e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.89e-50;3!UBERON:0000920;1.89e-50;3!UBERON:0005631;1.11e-15;10!UBERON:0000158;1.11e-15;10!UBERON:0000966;3.84e-14;5!UBERON:0005388;3.84e-14;5!UBERON:0001802;3.84e-14;5!UBERON:0000478;2.08e-11;24!UBERON:0000970;5.29e-08;20!UBERON:0002104;1.20e-07;21!UBERON:0000020;4.98e-07;23!UBERON:0002240;6.69e-07;3!UBERON:0005174;6.69e-07;3!UBERON:0001137;6.69e-07;3!UBERON:0001032;9.31e-07;24!UBERON:0004456;9.31e-07;24!UBERON:0001896;9.64e-07;3!UBERON:0001781;9.64e-07;3!UBERON:0001782;9.64e-07;3!UBERON:0005290;9.64e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003124;1.89e-50;3!UBERON:0000920;1.89e-50;3!UBERON:0005631;1.11e-15;10!UBERON:0000158;1.11e-15;10!UBERON:0000966;3.84e-14;5!UBERON:0005388;3.84e-14;5!UBERON:0001802;3.84e-14;5!UBERON:0000478;2.08e-11;24!UBERON:0000970;5.29e-08;20!UBERON:0002104;1.20e-07;21!UBERON:0000020;4.98e-07;23!UBERON:0002240;6.69e-07;3!UBERON:0005174;6.69e-07;3!UBERON:0001137;6.69e-07;3!UBERON:0001032;9.31e-07;24!UBERON:0004456;9.31e-07;24!UBERON:0001896;9.64e-07;3!UBERON:0001781;9.64e-07;3!UBERON:0001782;9.64e-07;3!UBERON:0005290;9.64e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.23e-50,3;UBERON:0003124,3.73e-38,7;UBERON:0005631,2.55e-19,14;UBERON:0000158,2.55e-19,14;UBERON:0000966,5.37e-12,6;UBERON:0005388,5.37e-12,6;UBERON:0001802,5.37e-12,6;UBERON:0000478,2.02e-11,24;UBERON:0000970,1.17e-07,21;UBERON:0002104,1.17e-07,21;UBERON:0002240,6.50e-07,3;UBERON:0005174,6.50e-07,3;UBERON:0001137,6.50e-07,3;UBERON:0001782,9.12e-07,3;UBERON:0005424,9.12e-07,3;UBERON:0000020,9.13e-07,24;UBERON:0001032,9.13e-07,24;UBERON:0004456,9.13e-07,24;UBERON:0001896,9.64e-07,3;UBERON:0005290,9.64e-07,3;UBERON:0010096,9.64e-07,3 | |||
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| ||
|short_description=p2@CLDN19 | |short_description=p2@CLDN19 | ||
}} | }} |
Latest revision as of 03:33, 18 September 2015
Short description: | p2@CLDN19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CLDN19_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -23bp_to_ENST00000296387, ENST00000539749, NM_001123395, NM_001185117, NM_148960, uc001cht.1, uc001chu.2, uc010ojv.1_5end |
EntrezGene: | CLDN19 |
HGNC: | 2040 |
UniProt: | Q8N6F1F5H5P9B7Z5I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.23e-50 | 3 |
extraembryonic cell | 1.57e-08 | 19 |
retinal pigment epithelial cell | 9.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.23e-50 | 3 |
chorion | 3.73e-38 | 7 |
extraembryonic membrane | 2.55e-19 | 14 |
membranous layer | 2.55e-19 | 14 |
retina | 5.37e-12 | 6 |
photoreceptor array | 5.37e-12 | 6 |
posterior segment of eyeball | 5.37e-12 | 6 |
extraembryonic structure | 2.02e-11 | 24 |
eye | 1.17e-07 | 21 |
visual system | 1.17e-07 | 21 |
spinal cord | 6.50e-07 | 3 |
dorsal region element | 6.50e-07 | 3 |
dorsum | 6.50e-07 | 3 |
pigmented layer of retina | 9.12e-07 | 3 |
presumptive retinal pigmented epithelium | 9.12e-07 | 3 |
sense organ | 9.13e-07 | 24 |
sensory system | 9.13e-07 | 24 |
entire sense organ system | 9.13e-07 | 24 |
medulla oblongata | 9.64e-07 | 3 |
myelencephalon | 9.64e-07 | 3 |
future myelencephalon | 9.64e-07 | 3 |