FFCP PHASE1:Hg19::chr2:69180018..69180036,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=200504 | |EntrezGene=200504 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24588 | |HGNC=24588 | ||
|TSSclassifier=strong | |||
|UniProt=E5RHQ8 | |UniProt=E5RHQ8 | ||
|association_with_transcript=-6bp_to_ENST00000481498_5end | |association_with_transcript=-6bp_to_ENST00000481498_5end | ||
|cluster_id=chr2:69180018..69180036,- | |||
|coexpression_cluster_id=C238 | |coexpression_cluster_id=C238 | ||
|description=CAGE_peak_1_at_GKN2_5end | |description=CAGE_peak_1_at_GKN2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000764!9.24e-10!2;CL:0000765!9.24e-10!2;CL:0000050!9.24e-10!2;CL:0000038!9.24e-10!2;CL:0000558!9.24e-10!2;CL:0000547!9.24e-10!2;CL:0000549!9.24e-10!2;CL:0000550!9.24e-10!2;CL:0000552!9.24e-10!2 | |ontology_enrichment_celltype=CL:0000764!9.24e-10!2;CL:0000765!9.24e-10!2;CL:0000050!9.24e-10!2;CL:0000038!9.24e-10!2;CL:0000558!9.24e-10!2;CL:0000547!9.24e-10!2;CL:0000549!9.24e-10!2;CL:0000550!9.24e-10!2;CL:0000552!9.24e-10!2 | ||
|ontology_enrichment_celltype_v019=CL:0000764;3.13e-27;2!CL:0000558;3.13e-27;2!CL:0002589;7.52e-08;2 | |ontology_enrichment_celltype_v019=CL:0000764;3.13e-27;2!CL:0000558;3.13e-27;2!CL:0002589;7.52e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,2.74e-27,2;CL:0000765,2.74e-27,2;CL:0000050,2.74e-27,2;CL:0000038,2.74e-27,2;CL:0000558,2.74e-27,2;CL:0000547,2.74e-27,2;CL:0000549,2.74e-27,2;CL:0000550,2.74e-27,2;CL:0000552,2.74e-27,2;CL:0002589,6.58e-08,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3112;7.13e-15;1 | |ontology_enrichment_disease_v019=DOID:3112;7.13e-15;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3112,7.13e-15,1 | |||
|ontology_enrichment_uberon=UBERON:0000477!8.65e-08!286;UBERON:0001737!3.54e-07!9;UBERON:0008947!3.91e-07!38;UBERON:0003258!3.91e-07!38 | |ontology_enrichment_uberon=UBERON:0000477!8.65e-08!286;UBERON:0001737!3.54e-07!9;UBERON:0008947!3.91e-07!38;UBERON:0003258!3.91e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;1.07e-14;1!UBERON:0006518;1.07e-14;1!UBERON:0008949;1.07e-14;1!UBERON:0000101;1.07e-14;1!UBERON:0002167;1.07e-14;1!UBERON:0002336;2.11e-14;1!UBERON:0011215;2.11e-14;1!UBERON:0001018;2.11e-14;1!UBERON:0002473;2.11e-14;1!UBERON:0005340;2.11e-14;1!UBERON:0003544;2.11e-14;1!UBERON:0005970;2.11e-14;1!UBERON:0002316;2.11e-14;1!UBERON:0001020;2.11e-14;1!UBERON:0002437;2.11e-14;1!UBERON:0005162;7.52e-08;2!UBERON:0000122;7.52e-08;2!UBERON:0001529;7.52e-08;2!UBERON:0007204;7.52e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0002171;1.07e-14;1!UBERON:0006518;1.07e-14;1!UBERON:0008949;1.07e-14;1!UBERON:0000101;1.07e-14;1!UBERON:0002167;1.07e-14;1!UBERON:0002336;2.11e-14;1!UBERON:0011215;2.11e-14;1!UBERON:0001018;2.11e-14;1!UBERON:0002473;2.11e-14;1!UBERON:0005340;2.11e-14;1!UBERON:0003544;2.11e-14;1!UBERON:0005970;2.11e-14;1!UBERON:0002316;2.11e-14;1!UBERON:0001020;2.11e-14;1!UBERON:0002437;2.11e-14;1!UBERON:0005162;7.52e-08;2!UBERON:0000122;7.52e-08;2!UBERON:0001529;7.52e-08;2!UBERON:0007204;7.52e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,1.07e-14,1;UBERON:0006518,1.07e-14,1;UBERON:0008949,1.07e-14,1;UBERON:0000101,1.07e-14,1;UBERON:0002167,1.07e-14,1;UBERON:0002336,1.41e-14,1;UBERON:0011215,1.41e-14,1;UBERON:0001018,1.41e-14,1;UBERON:0002473,1.41e-14,1;UBERON:0005340,1.41e-14,1;UBERON:0003544,1.41e-14,1;UBERON:0005970,1.41e-14,1;UBERON:0002316,1.41e-14,1;UBERON:0001020,1.41e-14,1;UBERON:0002437,1.41e-14,1;UBERON:0005162,6.15e-08,2;UBERON:0000122,6.15e-08,2;UBERON:0001529,6.58e-08,2;UBERON:0007204,6.58e-08,2 | |||
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| ||
|short_description=p1@GKN2 | |short_description=p1@GKN2 | ||
}} | }} |
Latest revision as of 03:28, 18 September 2015
Short description: | p1@GKN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GKN2_5end |
Coexpression cluster: | C238_stomach_gall_breast_duodenum_temporal_MCF7_smallcell |
Association with transcript: | -6bp_to_ENST00000481498_5end |
EntrezGene: | GKN2 |
HGNC: | 24588 |
UniProt: | E5RHQ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 2.74e-27 | 2 |
erythroblast | 2.74e-27 | 2 |
megakaryocyte-erythroid progenitor cell | 2.74e-27 | 2 |
erythroid progenitor cell | 2.74e-27 | 2 |
reticulocyte | 2.74e-27 | 2 |
proerythroblast | 2.74e-27 | 2 |
basophilic erythroblast | 2.74e-27 | 2 |
polychromatophilic erythroblast | 2.74e-27 | 2 |
orthochromatic erythroblast | 2.74e-27 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 1.07e-14 | 1 |
right lung lobe | 1.07e-14 | 1 |
lower lobe of lung | 1.07e-14 | 1 |
lobe of lung | 1.07e-14 | 1 |
right lung | 1.07e-14 | 1 |
corpus callosum | 1.41e-14 | 1 |
central nervous system cell part cluster | 1.41e-14 | 1 |
axon tract | 1.41e-14 | 1 |
intercerebral commissure | 1.41e-14 | 1 |
dorsal telencephalic commissure | 1.41e-14 | 1 |
brain white matter | 1.41e-14 | 1 |
brain commissure | 1.41e-14 | 1 |
white matter | 1.41e-14 | 1 |
nervous system commissure | 1.41e-14 | 1 |
cerebral hemisphere white matter | 1.41e-14 | 1 |
multi cell component structure | 6.15e-08 | 2 |
neuron projection bundle | 6.15e-08 | 2 |
brachiocephalic artery | 6.58e-08 | 2 |
brachiocephalic vasculature | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 7.13e-15 | 1 |