FFCP PHASE1:Hg19::chr4:57774042..57774114,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5978 | |EntrezGene=5978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9966 | |HGNC=9966 | ||
|TSSclassifier=strong | |||
|UniProt=Q13127,A0PJ83 | |UniProt=Q13127,A0PJ83 | ||
|association_with_transcript=0bp_to_ENST00000309042,ENST00000456010,NM_005612,uc003hch.2_5end | |association_with_transcript=0bp_to_ENST00000309042,ENST00000456010,NM_005612,uc003hch.2_5end | ||
|cluster_id=chr4:57774042..57774114,+ | |||
|description=CAGE_peak_1_at_REST_5end | |description=CAGE_peak_1_at_REST_5end | ||
|id=chr4:57774042..57774114,+ | |id=chr4:57774042..57774114,+ | ||
|ontology_enrichment_celltype=CL:0000763!1.13e-17!112;CL:0000049!1.13e-17!112;CL:0000766!2.93e-15!76;CL:0000037!3.84e-15!172;CL:0000566!3.84e-15!172;CL:0002032!8.53e-14!165;CL:0000837!8.53e-14!165;CL:0000557!9.72e-13!71;CL:0000738!1.31e-12!140;CL:0000988!1.52e-12!182;CL:0000839!6.90e-11!70;CL:0002009!4.14e-10!65;CL:0002194!5.49e-10!63;CL:0000576!5.49e-10!63;CL:0000040!5.49e-10!63;CL:0000559!5.49e-10!63;CL:0002057!1.92e-08!42;CL:0002031!7.49e-08!124;CL:0000860!1.19e-07!45;CL:0002087!1.97e-07!119 | |ontology_enrichment_celltype=CL:0000763!1.13e-17!112;CL:0000049!1.13e-17!112;CL:0000766!2.93e-15!76;CL:0000037!3.84e-15!172;CL:0000566!3.84e-15!172;CL:0002032!8.53e-14!165;CL:0000837!8.53e-14!165;CL:0000557!9.72e-13!71;CL:0000738!1.31e-12!140;CL:0000988!1.52e-12!182;CL:0000839!6.90e-11!70;CL:0002009!4.14e-10!65;CL:0002194!5.49e-10!63;CL:0000576!5.49e-10!63;CL:0000040!5.49e-10!63;CL:0000559!5.49e-10!63;CL:0002057!1.92e-08!42;CL:0002031!7.49e-08!124;CL:0000860!1.19e-07!45;CL:0002087!1.97e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.95e-09;33!CL:0002057;9.95e-09;33!CL:0000473;1.55e-07;39!CL:0000234;1.55e-07;39!CL:0000766;6.77e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,6.12e-18,108;CL:0000049,6.12e-18,108;CL:0000766,1.14e-15,72;CL:0000037,3.31e-15,168;CL:0002032,7.45e-14,161;CL:0000837,7.45e-14,161;CL:0000557,4.35e-13,67;CL:0000988,6.43e-13,177;CL:0000738,1.08e-12,136;CL:0000839,3.63e-11,66;CL:0002009,2.18e-10,61;CL:0002194,2.83e-10,59;CL:0000576,2.83e-10,59;CL:0000040,2.83e-10,59;CL:0000559,2.83e-10,59;CL:0000473,1.23e-08,48;CL:0000234,1.23e-08,48;CL:0000860,1.92e-08,42;CL:0002057,1.92e-08,42;CL:0002031,6.95e-08,120;CL:0002087,1.83e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!4.36e-11!86;UBERON:0002390!4.00e-10!102;UBERON:0003061!4.00e-10!102;UBERON:0002371!4.46e-10!80;UBERON:0002193!2.76e-09!112;UBERON:0004765!1.39e-08!101;UBERON:0001434!1.39e-08!101;UBERON:0002405!6.14e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.74e-11,82;UBERON:0002371,2.85e-10,76;UBERON:0002390,3.04e-10,98;UBERON:0003061,3.04e-10,98;UBERON:0002405,3.94e-10,93;UBERON:0004765,1.75e-09,90;UBERON:0002193,2.31e-09,108;UBERON:0001434,2.90e-08,100 | |||
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| ||
|short_description=p1@REST | |short_description=p1@REST | ||
}} | }} |
Latest revision as of 03:12, 18 September 2015
Short description: | p1@REST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_REST_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000309042, ENST00000456010, NM_005612, uc003hch.2_5end |
EntrezGene: | REST |
HGNC: | 9966 |
UniProt: | Q13127A0PJ83 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 6.12e-18 | 108 |
common myeloid progenitor | 6.12e-18 | 108 |
myeloid leukocyte | 1.14e-15 | 72 |
hematopoietic stem cell | 3.31e-15 | 168 |
hematopoietic oligopotent progenitor cell | 7.45e-14 | 161 |
hematopoietic multipotent progenitor cell | 7.45e-14 | 161 |
granulocyte monocyte progenitor cell | 4.35e-13 | 67 |
hematopoietic cell | 6.43e-13 | 177 |
leukocyte | 1.08e-12 | 136 |
myeloid lineage restricted progenitor cell | 3.63e-11 | 66 |
macrophage dendritic cell progenitor | 2.18e-10 | 61 |
monopoietic cell | 2.83e-10 | 59 |
monocyte | 2.83e-10 | 59 |
monoblast | 2.83e-10 | 59 |
promonocyte | 2.83e-10 | 59 |
defensive cell | 1.23e-08 | 48 |
phagocyte | 1.23e-08 | 48 |
classical monocyte | 1.92e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.92e-08 | 42 |
hematopoietic lineage restricted progenitor cell | 6.95e-08 | 120 |
nongranular leukocyte | 1.83e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone element | 2.74e-11 | 82 |
bone marrow | 2.85e-10 | 76 |
hematopoietic system | 3.04e-10 | 98 |
blood island | 3.04e-10 | 98 |
immune system | 3.94e-10 | 93 |
skeletal element | 1.75e-09 | 90 |
hemolymphoid system | 2.31e-09 | 108 |
skeletal system | 2.90e-08 | 100 |