FFCP PHASE1:Hg19::chr4:5712898..5712937,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:5712898..5712937,+ to FFCP PHASE1:Hg19::chr4:5712898..5712937,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2121 | |EntrezGene=2121 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3497 | |HGNC=3497 | ||
|TSSclassifier=strong | |||
|UniProt=P57679 | |UniProt=P57679 | ||
|association_with_transcript=0bp_to_ENST00000264956,ENST00000382674,NM_153717,uc003gil.1,uc003gim.1_5end | |||
|cluster_id=chr4:5712898..5712937,+ | |||
|description=CAGE_peak_1_at_EVC_5end | |||
|id=chr4:5712898..5712937,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.41e-32!180;CL:0000057!8.34e-20!75;CL:0002620!9.19e-11!23;CL:0000220!4.14e-09!246;CL:0002321!6.49e-09!248;CL:0000183!2.57e-08!59;CL:0000222!2.57e-08!119;CL:0000680!6.71e-08!57;CL:0000056!6.71e-08!57;CL:0000355!6.71e-08!57;CL:0000187!3.36e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.61e-11;23!CL:0000057;2.12e-08;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.73e-20,76;CL:0002620,8.01e-11,23;CL:0002321,2.11e-09,250;CL:0000222,9.66e-09,121;CL:0000680,2.73e-08,58;CL:0000056,2.73e-08,58;CL:0000355,2.73e-08,58;CL:0000187,1.41e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.48e-15!365;UBERON:0003102!2.73e-14!95;UBERON:0000914!1.36e-11!83;UBERON:0002329!1.36e-11!83;UBERON:0003077!1.36e-11!83;UBERON:0003059!1.36e-11!83;UBERON:0007282!1.36e-11!83;UBERON:0009618!1.36e-11!83;UBERON:0007285!1.36e-11!83;UBERON:0000486!3.54e-11!82;UBERON:0005256!2.64e-10!143;UBERON:0002199!2.79e-10!45;UBERON:0002416!2.79e-10!45;UBERON:0004290!5.66e-10!70;UBERON:0000481!1.13e-09!347;UBERON:0002100!1.21e-09!216;UBERON:0002097!2.02e-09!40;UBERON:0000468!2.67e-09!659;UBERON:0002385!4.83e-08!63;UBERON:0001015!4.83e-08!63;UBERON:0000383!4.83e-08!63;UBERON:0003104!5.12e-08!238;UBERON:0009142!5.12e-08!238;UBERON:0001134!7.21e-08!61;UBERON:0002036!7.21e-08!61;UBERON:0003082!7.21e-08!61;UBERON:0000480!1.62e-07!626;UBERON:0000467!2.02e-07!625;UBERON:0000119!2.73e-07!312;UBERON:0004872!2.77e-07!84;UBERON:0000483!3.41e-07!309;UBERON:0001444!5.80e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.93e-07;41!UBERON:0002199;2.30e-07;46!UBERON:0002416;2.30e-07;46!UBERON:0003102;7.65e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.08e-14,99;UBERON:0000486,1.33e-11,83;UBERON:0003104,1.48e-10,160;UBERON:0009142,1.48e-10,160;UBERON:0007503,1.55e-10,78;UBERON:0007524,2.15e-10,73;UBERON:0002329,2.17e-10,71;UBERON:0003059,2.17e-10,71;UBERON:0007282,2.17e-10,71;UBERON:0004290,2.17e-10,71;UBERON:0009618,2.17e-10,71;UBERON:0002199,2.43e-10,46;UBERON:0002416,2.43e-10,46;UBERON:0003077,3.85e-10,72;UBERON:0007285,3.85e-10,72;UBERON:0005256,1.41e-09,122;UBERON:0002097,1.79e-09,41;UBERON:0002385,1.99e-08,64;UBERON:0001015,1.99e-08,64;UBERON:0000383,1.99e-08,64;UBERON:0001134,2.98e-08,62;UBERON:0002036,2.98e-08,62;UBERON:0003082,2.98e-08,62;UBERON:0002100,3.64e-08,199;UBERON:0000119,2.07e-07,309;UBERON:0000483,2.59e-07,306;UBERON:0004872,5.37e-07,83;UBERON:0000490,7.14e-07,148 | |||
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| ||
|short_description=p1@EVC | |||
}} | }} |
Latest revision as of 02:23, 18 September 2015
Short description: | p1@EVC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EVC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000264956, ENST00000382674, NM_153717, uc003gil.1, uc003gim.1_5end |
EntrezGene: | EVC |
HGNC: | 3497 |
UniProt: | P57679 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.73e-20 | 76 |
skin fibroblast | 8.01e-11 | 23 |
embryonic cell | 2.11e-09 | 250 |
mesodermal cell | 9.66e-09 | 121 |
muscle precursor cell | 2.73e-08 | 58 |
myoblast | 2.73e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.73e-08 | 58 |
muscle cell | 1.41e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.08e-14 | 99 |
multilaminar epithelium | 1.33e-11 | 83 |
mesenchyme | 1.48e-10 | 160 |
entire embryonic mesenchyme | 1.48e-10 | 160 |
epithelial vesicle | 1.55e-10 | 78 |
dense mesenchyme tissue | 2.15e-10 | 73 |
somite | 2.17e-10 | 71 |
presomitic mesoderm | 2.17e-10 | 71 |
presumptive segmental plate | 2.17e-10 | 71 |
dermomyotome | 2.17e-10 | 71 |
trunk paraxial mesoderm | 2.17e-10 | 71 |
integument | 2.43e-10 | 46 |
integumental system | 2.43e-10 | 46 |
paraxial mesoderm | 3.85e-10 | 72 |
presumptive paraxial mesoderm | 3.85e-10 | 72 |
trunk mesenchyme | 1.41e-09 | 122 |
skin of body | 1.79e-09 | 41 |
muscle tissue | 1.99e-08 | 64 |
musculature | 1.99e-08 | 64 |
musculature of body | 1.99e-08 | 64 |
skeletal muscle tissue | 2.98e-08 | 62 |
striated muscle tissue | 2.98e-08 | 62 |
myotome | 2.98e-08 | 62 |
trunk | 3.64e-08 | 199 |
cell layer | 2.07e-07 | 309 |
epithelium | 2.59e-07 | 306 |
splanchnic layer of lateral plate mesoderm | 5.37e-07 | 83 |
unilaminar epithelium | 7.14e-07 | 148 |