FFCP PHASE1:Hg19::chr4:55096011..55096052,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5156 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |||
|TSSclassifier=strong | |||
|UniProt=D6RIG5 | |||
|association_with_transcript=1bp_to_ENST00000503856_5end | |||
|cluster_id=chr4:55096011..55096052,+ | |||
|coexpression_cluster_id=C720 | |||
|description=CAGE_peak_5_at_PDGFRA_5end | |||
|id=chr4:55096011..55096052,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.36e-32!180;CL:0000057!3.42e-22!75;CL:0000680!1.07e-14!57;CL:0000056!1.07e-14!57;CL:0000355!1.07e-14!57;CL:0000187!1.86e-14!54;CL:0000393!3.24e-12!60;CL:0000211!3.24e-12!60;CL:0002620!3.62e-12!23;CL:0000183!5.63e-12!59;CL:0000192!9.52e-12!42;CL:0000514!9.52e-12!42;CL:0000359!6.56e-10!32;CL:0000048!1.81e-08!430;CL:0000723!8.81e-08!436;CL:0002494!1.36e-07!16;CL:0002334!2.73e-07!12;CL:0000034!6.37e-07!444;CL:0000153!7.62e-07!9;CL:0000447!7.62e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.93e-13;23!CL:0000192;2.04e-08;43!CL:0000499;3.54e-08;28!CL:0002494;4.33e-08;16!CL:0000057;1.67e-07;73!CL:1000306;2.64e-07;4!CL:0002547;2.64e-07;4!CL:0002320;4.62e-07;188!CL:0000153;7.50e-07;9!CL:0000447;7.50e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.94e-21,76;CL:0000048,1.16e-14,427;CL:0000723,4.88e-14,433;CL:0002620,3.04e-13,23;CL:0000034,3.07e-13,441;CL:0000187,3.77e-10,55;CL:0000680,3.77e-10,58;CL:0000056,3.77e-10,58;CL:0000355,3.77e-10,58;CL:0000192,6.14e-10,43;CL:0000514,6.14e-10,43;CL:0002320,9.01e-09,361;CL:0000393,1.88e-08,61;CL:0000211,1.88e-08,61;CL:0000499,2.52e-08,28;CL:0002494,3.56e-08,16;CL:1000306,2.63e-07,4;CL:0002547,2.63e-07,4;CL:0000134,3.06e-07,354;CL:0000153,5.22e-07,9;CL:0000447,5.22e-07,9;CL:0000136,6.44e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;2.04e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;5.08e-08;5!DOID:450;5.08e-08;5!DOID:66;5.08e-08;5!DOID:423;5.08e-08;5!DOID:0080000;5.08e-08;5!DOID:11722;5.08e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.45e-08,5;DOID:450,4.45e-08,5;DOID:66,4.45e-08,5;DOID:423,4.45e-08,5;DOID:0080000,4.45e-08,5;DOID:11722,4.45e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.18e-15!83;UBERON:0002329!4.18e-15!83;UBERON:0003077!4.18e-15!83;UBERON:0003059!4.18e-15!83;UBERON:0007282!4.18e-15!83;UBERON:0009618!4.18e-15!83;UBERON:0007285!4.18e-15!83;UBERON:0001134!3.28e-14!61;UBERON:0002036!3.28e-14!61;UBERON:0003082!3.28e-14!61;UBERON:0002385!6.56e-14!63;UBERON:0001015!6.56e-14!63;UBERON:0000383!6.56e-14!63;UBERON:0000475!3.64e-13!365;UBERON:0004290!5.26e-13!70;UBERON:0000486!8.14e-11!82;UBERON:0004573!1.42e-09!33;UBERON:0004571!1.42e-09!33;UBERON:0004872!1.77e-09!84;UBERON:0000948!1.92e-09!24;UBERON:0005498!1.92e-09!24;UBERON:0004140!1.92e-09!24;UBERON:0009881!1.92e-09!24;UBERON:0004141!1.92e-09!24;UBERON:0003084!1.92e-09!24;UBERON:0007005!1.92e-09!24;UBERON:0004139!1.92e-09!24;UBERON:0004291!1.92e-09!24;UBERON:0007100!3.38e-09!27;UBERON:0003102!9.97e-09!95;UBERON:0005256!2.21e-08!143;UBERON:0002100!7.46e-08!216;UBERON:0001637!2.18e-07!42;UBERON:0003509!2.18e-07!42;UBERON:0004572!2.18e-07!42;UBERON:0000468!3.50e-07!659;UBERON:0004457!5.78e-07!12;UBERON:0000042!5.78e-07!12;UBERON:0000481!7.80e-07!347;UBERON:0003688!9.62e-07!6;UBERON:0002358!9.62e-07!6;UBERON:0003684!9.62e-07!6;UBERON:0001178!9.62e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.05e-10;9!UBERON:0000042;2.05e-10;9!UBERON:0003688;4.71e-10;6!UBERON:0002358;4.71e-10;6!UBERON:0003684;4.71e-10;6!UBERON:0001178;4.71e-10;6!UBERON:0002384;9.94e-08;198!UBERON:0004905;1.34e-07;8!UBERON:0000982;1.34e-07;8!UBERON:0004770;1.34e-07;8!UBERON:0004797;2.64e-07;4!UBERON:0000415;2.64e-07;4!UBERON:0007240;2.64e-07;4!UBERON:0005742;2.64e-07;4!UBERON:0005734;2.64e-07;4!UBERON:0004664;2.64e-07;4!UBERON:0004663;2.64e-07;4!UBERON:0004573;6.59e-07;33!UBERON:0004571;6.59e-07;33!UBERON:0011135;6.83e-07;5!UBERON:0002216;6.83e-07;5!UBERON:0011134;6.83e-07;5!UBERON:0002209;6.83e-07;5!UBERON:0002213;6.83e-07;5!UBERON:0007844;6.83e-07;5!UBERON:0011138;6.83e-07;5!UBERON:0001130;6.83e-07;5!UBERON:0001066;6.83e-07;5!UBERON:0001468;6.83e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.05e-10,6;UBERON:0002358,5.05e-10,6;UBERON:0003684,5.05e-10,6;UBERON:0001178,5.05e-10,6;UBERON:0002384,2.76e-09,371;UBERON:0001134,5.13e-09,62;UBERON:0002036,5.13e-09,62;UBERON:0003082,5.13e-09,62;UBERON:0002385,1.65e-08,64;UBERON:0001015,1.65e-08,64;UBERON:0000383,1.65e-08,64;UBERON:0004573,2.87e-08,33;UBERON:0004571,2.87e-08,33;UBERON:0003102,5.61e-08,99;UBERON:0007524,6.74e-08,73;UBERON:0002329,1.32e-07,71;UBERON:0003059,1.32e-07,71;UBERON:0007282,1.32e-07,71;UBERON:0004290,1.32e-07,71;UBERON:0009618,1.32e-07,71;UBERON:0004905,1.66e-07,8;UBERON:0000982,1.66e-07,8;UBERON:0004770,1.66e-07,8;UBERON:0003077,2.11e-07,72;UBERON:0007285,2.11e-07,72;UBERON:0004457,2.26e-07,12;UBERON:0000042,2.26e-07,12;UBERON:0001637,2.56e-07,42;UBERON:0003509,2.56e-07,42;UBERON:0004572,2.56e-07,42;UBERON:0000415,2.63e-07,4;UBERON:0007240,2.63e-07,4;UBERON:0005742,2.63e-07,4;UBERON:0005734,2.63e-07,4;UBERON:0004664,2.63e-07,4;UBERON:0004663,2.63e-07,4;UBERON:0002097,3.17e-07,41;UBERON:0000486,9.55e-07,83;UBERON:0000948,9.81e-07,24;UBERON:0005498,9.81e-07,24;UBERON:0004140,9.81e-07,24;UBERON:0009881,9.81e-07,24;UBERON:0004141,9.81e-07,24;UBERON:0003084,9.81e-07,24;UBERON:0007005,9.81e-07,24;UBERON:0004139,9.81e-07,24;UBERON:0004291,9.81e-07,24 | |||
|phase1_expression=9.26559734279839,3.42560838225573,12.5449419645414,5.00366491765652,6.70441641640932,13.0850778615055,0,1.26343974685366,0.261185628199839,0,0,0,0,2.10402800032079,6.62794751455832,0.672325146451775,0,0.730310090387373,0,0,0.204000691244253,0,0,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,1.34140171940727,5.4980901592718,4.69870898099936,5.0133791063589,3.76600949298142,2.3858578411533,2.91980922181582,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47274756525787,7.97772223486853,10.4603252842443,33.84672124836,4.61068896857864,2.80338800071154,0,0,3.42332138939743,0.67355336034844,0.490385709340376,0.151357427644931,0,0,1.24864030732128,0.570471821544449,0.149448680551801,0,0,0.280901613404497,1.02077085627447,0.368502951935304,0.619954687054593,2.37600571456411,2.71993622206413,0,0,0.336672227908132,0.125118519871964,0.831192346452549,2.19488810440419,3.98434134538726,2.25357088359895,1.58805056424029,5.202299434977,2.56268866582281,4.66250182551036,13.2040082277137,6.80146692973697,4.12224864073007,2.60563598864226,8.77636927654584,10.0360115316035,6.31084435610286,4.87864462804187,6.62748832957129,9.23024940543197,3.12331504505685,2.37384829234683,0,0,0,0,0,0,0,0,0,0,0,0,8.35862270457562,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,1.03417372606222,0,0,4.78688609852767,0,0.257207374262142,0,0,9.29356958777959,0.542621605391443,0,0.325736184293735,10.6617584622764,0,3.01439377059586,0,0.599837947092342,0,0,0,2.39624855491583,2.29723871668228,0,2.17171960001369,0.410952645100767,0,0,0,0,0,1.77866236955724,0,0,0.335032530668698,0,0,0,0,4.2942022101699,2.00068208423871,1.35632511849868,2.28767947683888,1.96271887676878,1.26161932027148,1.87426263988341,8.42649079237613,0,2.0694614258501,1.99267679560631,0.737476674166813,1.39013783148933,0,0,0,0,0,0,0,0.604780586659361,8.68377327365719,8.13348458426731,3.08726103876381,9.99485364194467,8.18731598506726,5.14732547659544,4.45254199334973,0.308419387605311,0.887808626565635,0.574890092096664,0,0.929683027679674,0,0,0,2.18147451512753,1.63882051206045,1.44236856455367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.183138929636687,0.577566499444116,0,0,4.82051789532479,0.48335359146061,0.154048617114644,0.921022048356777,0.137836572484531,0.429680979473094,0,0.255679882248303,2.93805717634233,0,0,0,0,0.464845549297286,29.2775482552495,2.7881490806424,0.616067160352178,2.12922412126809,4.34966496037536,0.9266210955196,1.28812398067792,1.48863347743867,1.2655176988749,1.5250415513906,0,2.56763392820352,3.81843897511124,1.56989728039846,0.899362287916574,1.92175920815238,1.64937363283961,3.43710218674637,1.58510321173008,0.421258456238981,0,0.974853958525138,2.11300293513511,5.45999645631943,2.2624869112594,7.910568163417,3.85955740482287,0.66343897524122,3.94605796728386,0,3.9353685122798,0,0,0,0.286822704408103,0.687743287091848,0,1.06428319221179,4.43326034125095,1.97576935775941,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0.111308705022906,0,0,4.18420775327246,0,0,0,0,1.55519793830904,0,0,0,0.0986434056369336,0,5.55684950723184,0.969332746095218,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.846452843541768,1.59518878185802,0,0,0,0,3.75550132947635,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.619202951523374,0,0,0,0,0.269604531922708,0.802577647298789,0.234264445725339,0,0,0,0.394584402849391,1.20990716048664,0,1.32691817219825,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.06687918137261,0.970817393606503,0,0,0,0.126621591911757,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0.136905378891993,0,4.72741985561953,0,0.279282401272254,0.458320848023367,0.717873024576814,0.199679000498991,0,0.446342914883745,0.268733889946905,1.80149941771202,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.236417121897595,0.419636705079985,0,0,0,0.714695326373367,0,4.068296602476,0,0,1.30634944043764,0,0,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0,0.640724475406168,2.04365596629566,0.414239055347196,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0.554645257684261,0.310482014706917,0,0,0,0,0.235265819698172,0,0,1.34329322598187,1.40227985908335,1.10961172300523,3.21985108967651,4.77979013329893,3.55924488638614,1.37304041038154,9.6787791208473,2.33155800874171,1.77426179987561,0.318593534327405,0,0.46578887062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| |||
|short_description=p5@PDGFRA | |||
}} |
Latest revision as of 00:48, 18 September 2015
Short description: | p5@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PDGFRA_5end |
Coexpression cluster: | C720_Smooth_Fibroblast_Preadipocyte_Sertoli_Ewing_hepatic_Synoviocyte |
Association with transcript: | 1bp_to_ENST00000503856_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | D6RIG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.94e-21 | 76 |
multi fate stem cell | 1.16e-14 | 427 |
somatic stem cell | 4.88e-14 | 433 |
skin fibroblast | 3.04e-13 | 23 |
stem cell | 3.07e-13 | 441 |
muscle cell | 3.77e-10 | 55 |
muscle precursor cell | 3.77e-10 | 58 |
myoblast | 3.77e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.77e-10 | 58 |
smooth muscle cell | 6.14e-10 | 43 |
smooth muscle myoblast | 6.14e-10 | 43 |
connective tissue cell | 9.01e-09 | 361 |
electrically responsive cell | 1.88e-08 | 61 |
electrically active cell | 1.88e-08 | 61 |
stromal cell | 2.52e-08 | 28 |
cardiocyte | 3.56e-08 | 16 |
fibroblast of tunica adventitia of artery | 2.63e-07 | 4 |
fibroblast of the aortic adventitia | 2.63e-07 | 4 |
mesenchymal cell | 3.06e-07 | 354 |
GAG secreting cell | 5.22e-07 | 9 |
carbohydrate secreting cell | 5.22e-07 | 9 |
fat cell | 6.44e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.45e-08 | 5 |
myotonic disease | 4.45e-08 | 5 |
muscle tissue disease | 4.45e-08 | 5 |
myopathy | 4.45e-08 | 5 |
muscular disease | 4.45e-08 | 5 |
myotonic dystrophy | 4.45e-08 | 5 |