FFCP PHASE1:Hg19::chr4:55095476..55095494,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:55095476..55095494,+
|short_description=p4@PDGFRA
|description=CAGE_peak_4_at_PDGFRA_5end
|association_with_transcript=0bp_to_ENST00000509490_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt=P16234 | |UniProt=P16234 | ||
|association_with_transcript=0bp_to_ENST00000509490_5end | |||
|cluster_id=chr4:55095476..55095494,+ | |||
|coexpression_cluster_id=C1941 | |||
|description=CAGE_peak_4_at_PDGFRA_5end | |||
|id=chr4:55095476..55095494,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.00e-30!180;CL:0000057!1.07e-23!75;CL:0002620!2.50e-12!23;CL:0000680!1.91e-11!57;CL:0000056!1.91e-11!57;CL:0000355!1.91e-11!57;CL:0000187!2.92e-11!54;CL:0000393!1.39e-10!60;CL:0000211!1.39e-10!60;CL:0000183!6.81e-10!59;CL:0000192!1.53e-08!42;CL:0000514!1.53e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.52e-14;23!CL:0000057;7.86e-09;73!CL:0002320;4.68e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.32e-23,76;CL:0002620,6.27e-14,23;CL:0000187,3.06e-09,55;CL:0000393,5.04e-09,61;CL:0000211,5.04e-09,61;CL:0000048,5.46e-09,427;CL:0000680,7.80e-09,58;CL:0000056,7.80e-09,58;CL:0000355,7.80e-09,58;CL:0000723,2.59e-08,433;CL:0000034,1.83e-07,441;CL:0000192,5.32e-07,43;CL:0000514,5.32e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.94e-16!83;UBERON:0002329!7.94e-16!83;UBERON:0003077!7.94e-16!83;UBERON:0003059!7.94e-16!83;UBERON:0007282!7.94e-16!83;UBERON:0009618!7.94e-16!83;UBERON:0007285!7.94e-16!83;UBERON:0000475!8.98e-15!365;UBERON:0004290!6.71e-13!70;UBERON:0002385!1.08e-11!63;UBERON:0001015!1.08e-11!63;UBERON:0000383!1.08e-11!63;UBERON:0001134!3.99e-11!61;UBERON:0002036!3.99e-11!61;UBERON:0003082!3.99e-11!61;UBERON:0000481!6.99e-11!347;UBERON:0007023!8.74e-11!115;UBERON:0000486!3.51e-10!82;UBERON:0000468!3.40e-09!659;UBERON:0005256!8.96e-09!143;UBERON:0003102!1.13e-08!95;UBERON:0000477!5.12e-08!286;UBERON:0007100!1.41e-07!27;UBERON:0002199!2.17e-07!45;UBERON:0002416!2.17e-07!45;UBERON:0000948!3.46e-07!24;UBERON:0005498!3.46e-07!24;UBERON:0004140!3.46e-07!24;UBERON:0009881!3.46e-07!24;UBERON:0004141!3.46e-07!24;UBERON:0003084!3.46e-07!24;UBERON:0007005!3.46e-07!24;UBERON:0004139!3.46e-07!24;UBERON:0004291!3.46e-07!24;UBERON:0004872!7.53e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.78e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.11e-10,73;UBERON:0002329,1.66e-10,71;UBERON:0003059,1.66e-10,71;UBERON:0007282,1.66e-10,71;UBERON:0004290,1.66e-10,71;UBERON:0009618,1.66e-10,71;UBERON:0003077,3.62e-10,72;UBERON:0007285,3.62e-10,72;UBERON:0002199,1.76e-09,46;UBERON:0002416,1.76e-09,46;UBERON:0002385,1.92e-09,64;UBERON:0001015,1.92e-09,64;UBERON:0000383,1.92e-09,64;UBERON:0003102,2.06e-09,99;UBERON:0001134,7.73e-09,62;UBERON:0002036,7.73e-09,62;UBERON:0003082,7.73e-09,62;UBERON:0000486,1.79e-08,83;UBERON:0007503,2.29e-08,78;UBERON:0002097,5.77e-08,41;UBERON:0000479,6.71e-08,773;UBERON:0000948,1.26e-07,24;UBERON:0005498,1.26e-07,24;UBERON:0004140,1.26e-07,24;UBERON:0009881,1.26e-07,24;UBERON:0004141,1.26e-07,24;UBERON:0003084,1.26e-07,24;UBERON:0007005,1.26e-07,24;UBERON:0004139,1.26e-07,24;UBERON:0004291,1.26e-07,24;UBERON:0007100,1.48e-07,27;UBERON:0004872,5.25e-07,83;UBERON:0010314,5.38e-07,132 | |||
|phase1_expression=4.36028110249336,3.21150785836475,4.22863212287913,1.0007329835313,1.34088328328186,1.74467704820074,0,5.68547886084148,3.3954131665979,0.737201809504527,0,0,0,10.643906354564,5.63375538737457,2.01697543935533,1.80808358407193,1.46062018077475,0.487932798790507,0,0,0,2.28988789704845,0.821246550437305,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,5.36560687762909,3.06870148424473,9.39741796199872,15.0401373190767,5.5041677205113,1.5905718941022,2.43317435151318,0,0,0.087834785693126,0.851363990735132,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,3.92554586160197,8.87141511448566,13.7681577959431,4.61068896857864,1.68203280042692,0,0.24666754841716,12.4484414159907,3.09834545760283,3.10577615915572,7.87058623753643,4.60940739583999,0.937285727335186,3.43376084513353,0.570471821544449,2.69007624993242,3.64046945795671,3.88495066483516,3.08991774744947,10.2077085627447,6.26455018290017,10.6425554611038,26.1360628602052,3.70900393917835,0.910161361938026,1.43723628363248,10.4368390651521,8.13270379167767,7.20366700258876,3.95079858792754,2.14541457059314,3.75595147266492,1.58805056424029,8.9694817844431,7.68806599746843,6.35795703478686,10.8032794590385,11.747988333182,4.12224864073007,5.02515512095292,12.9957775825775,4.87185025805993,6.31084435610286,9.48113956015683,11.3152239773168,8.87523981291536,3.52632343796741,2.7129694769678,0,0,0,0.121973706129595,0,0.580969714347592,0.207322110030741,0.252320850875628,0,0,1.28648187638577,1.38134921352481,6.50115099244771,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0.982827216677626,1.18157981336281,0,0,1.54411029268673,0,0,0,0,0.325808305310325,0,0,0.579652024875384,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.317489471460845,0,0,0,0.102827492703324,0,0,1.68196626518041,0,2.56684000373325,0.646358578788889,3.57656445851882,0.845302752556,0.531876233169741,1.04007436911366,0.257207374262142,0,0.799266537048298,19.7309631248244,4.34097284313154,0.823240336780769,0.65147236858747,14.9264618471869,2.37585561880029,2.1100756394171,0.871533458600294,0.899756920638513,0,0,0,0.479249710983165,0,0,2.17171960001369,0.205476322550383,0.179060963239896,0,0,0,0,11.4342580900109,1.30139853857622,1.54657762555539,1.17261385734044,3.82763250991898,0,0,0,14.7229790062968,6.00204625271613,2.44138521329762,3.53550464602372,3.03329280955175,0.788512075169673,5.03708084468667,1.50473049863859,0,2.0694614258501,1.32845119707087,1.10621501125022,6.6031546995743,0,0.686286847621712,0,0,0,0,0,0.604780586659361,0.992431231275107,2.14846762603287,1.12264037773229,0.640695746278505,3.58195074346692,1.44768529029247,1.48418066444991,4.1636617326717,4.79416658345443,9.8552587216571,4.67328986265259,3.83494248917865,0.241718899183244,0,0,2.87036120411517,0.546273504020151,2.36023946926963,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0.328014645699706,0,2.88514832613622,0.457847324091717,0.577566499444116,0,0,6.42735719376638,2.03008508413456,0.462145851343933,1.38153307253517,1.51620229732984,3.43744783578476,2.46528379654188,0.852266274161009,4.89676196057055,0,0,0,0.10115778085555,0.464845549297286,7.24068397710472,8.3644472419272,4.62050370264133,1.06461206063404,9.5692629128258,2.03856641014312,1.14499909393593,0.372158369359667,0.316379424718726,0.571890581771475,0,2.1396949401696,15.273755900445,0,3.77732160924961,5.76527762445715,3.88780927740765,2.42618977887979,0,2.52755073743389,0.48763373908959,7.06769119930725,0,3.68549760801562,3.95935209470396,9.04064932961942,14.8868642757454,0.66343897524122,1.75380354101505,0.578775534266688,5.9030527684197,0.202910376962704,0,1.12678241012897,4.15892921391749,2.35797698431491,0,4.25713276884717,6.54433669422759,8.23237232399755,3.41525856389144,1.39973888097993,0,0,0,2.44773882019626,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,28.5653041693361,0,0,0,5.55365573383863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00683535014765,0,0,0,0,0,0,1.9882952955326,1.40669416410513,1.00177834520615,0,0,2.59022384726391,1.65770349318689,0,0,0,4.0435146396035,0,0,0,4.04437963111428,0,0,0.969332746095218,1.57705766875147,0,0,0,2.89999830173917,0,0,0,0,0,1.21537496453305,0.885741385813839,0.964771509003264,1.52581736317083,0.774054819518572,0.295547618953547,0.219385397153973,0,0,3.23191085715948,18.2307289355202,0,0,0,1.27600463892768,6.41183153813036,0,0,0,0,0,0,0,0,0,0,0,1.83758992864123,0,0,2.74218449960351,1.22206028986725,0,0,0,1.7524294574976,0,2.34264445725339,0,0,0,0.394584402849391,2.41981432097328,0.30607276163049,2.46427660551103,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0.343972064943233,0,0,0,2.32773639572207,2.64768380074501,2.71176888936639,0,0,1.39283751102933,0,0,0.85381197895741,0,0,0,3.60349495510126,0,0.124252535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| ||
|short_description=p4@PDGFRA | |||
}} | }} |
Latest revision as of 00:48, 18 September 2015
Short description: | p4@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PDGFRA_5end |
Coexpression cluster: | C1941_Fibroblast_Nucleus_Mesenchymal_tenocyte_Anulus_Smooth_acute |
Association with transcript: | 0bp_to_ENST00000509490_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | P16234 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.32e-23 | 76 |
skin fibroblast | 6.27e-14 | 23 |
muscle cell | 3.06e-09 | 55 |
electrically responsive cell | 5.04e-09 | 61 |
electrically active cell | 5.04e-09 | 61 |
multi fate stem cell | 5.46e-09 | 427 |
muscle precursor cell | 7.80e-09 | 58 |
myoblast | 7.80e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.80e-09 | 58 |
somatic stem cell | 2.59e-08 | 433 |
stem cell | 1.83e-07 | 441 |
smooth muscle cell | 5.32e-07 | 43 |
smooth muscle myoblast | 5.32e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.11e-10 | 73 |
somite | 1.66e-10 | 71 |
presomitic mesoderm | 1.66e-10 | 71 |
presumptive segmental plate | 1.66e-10 | 71 |
dermomyotome | 1.66e-10 | 71 |
trunk paraxial mesoderm | 1.66e-10 | 71 |
paraxial mesoderm | 3.62e-10 | 72 |
presumptive paraxial mesoderm | 3.62e-10 | 72 |
integument | 1.76e-09 | 46 |
integumental system | 1.76e-09 | 46 |
muscle tissue | 1.92e-09 | 64 |
musculature | 1.92e-09 | 64 |
musculature of body | 1.92e-09 | 64 |
surface structure | 2.06e-09 | 99 |
skeletal muscle tissue | 7.73e-09 | 62 |
striated muscle tissue | 7.73e-09 | 62 |
myotome | 7.73e-09 | 62 |
multilaminar epithelium | 1.79e-08 | 83 |
epithelial vesicle | 2.29e-08 | 78 |
skin of body | 5.77e-08 | 41 |
tissue | 6.71e-08 | 773 |
heart | 1.26e-07 | 24 |
primitive heart tube | 1.26e-07 | 24 |
primary heart field | 1.26e-07 | 24 |
anterior lateral plate mesoderm | 1.26e-07 | 24 |
heart tube | 1.26e-07 | 24 |
heart primordium | 1.26e-07 | 24 |
cardiac mesoderm | 1.26e-07 | 24 |
cardiogenic plate | 1.26e-07 | 24 |
heart rudiment | 1.26e-07 | 24 |
primary circulatory organ | 1.48e-07 | 27 |
splanchnic layer of lateral plate mesoderm | 5.25e-07 | 83 |
structure with developmental contribution from neural crest | 5.38e-07 | 132 |