FFCP PHASE1:Hg19::chr4:55095428..55095475,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:55095428..55095475,+
|short_description=p2@PDGFRA
|description=CAGE_peak_2_at_PDGFRA_5end
|association_with_transcript=0bp_to_ENST00000508170,ENST000005090...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt=D6RJH0 | |UniProt=D6RJH0 | ||
|association_with_transcript=0bp_to_ENST00000508170,ENST00000509092,ENST00000512143_5end | |||
|cluster_id=chr4:55095428..55095475,+ | |||
|coexpression_cluster_id=C1941 | |||
|description=CAGE_peak_2_at_PDGFRA_5end | |||
|id=chr4:55095428..55095475,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.64e-34!180;CL:0000057!2.00e-24!75;CL:0000187!1.72e-13!54;CL:0000680!2.23e-13!57;CL:0000056!2.23e-13!57;CL:0000355!2.23e-13!57;CL:0002620!8.47e-13!23;CL:0000183!2.10e-12!59;CL:0000393!2.93e-12!60;CL:0000211!2.93e-12!60;CL:0000192!1.45e-10!42;CL:0000514!1.45e-10!42;CL:0000359!6.54e-08!32;CL:0002494!5.33e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.13e-13;23!CL:0000057;5.13e-10;73!CL:0000192;1.15e-08;43!CL:0000187;5.74e-08;55!CL:0000359;8.46e-08;32!CL:0000723;1.25e-07;61!CL:0002320;1.40e-07;188!CL:0000393;1.62e-07;61!CL:0000211;1.62e-07;61!CL:0000048;2.44e-07;58!CL:0002494;3.82e-07;16!CL:0000134;4.48e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.19e-25,76;CL:0000187,2.84e-14,55;CL:0000680,8.53e-14,58;CL:0000056,8.53e-14,58;CL:0000355,8.53e-14,58;CL:0002620,3.88e-13,23;CL:0000393,1.17e-12,61;CL:0000211,1.17e-12,61;CL:0000192,2.98e-11,43;CL:0000514,2.98e-11,43;CL:0000359,3.65e-08,32;CL:0002494,3.64e-07,16;CL:0000048,8.80e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;1.15e-08;43!CL:0000355;9.25e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.38e-20!83;UBERON:0002329!9.38e-20!83;UBERON:0003077!9.38e-20!83;UBERON:0003059!9.38e-20!83;UBERON:0007282!9.38e-20!83;UBERON:0009618!9.38e-20!83;UBERON:0007285!9.38e-20!83;UBERON:0000475!8.11e-19!365;UBERON:0004290!4.34e-17!70;UBERON:0000481!2.41e-15!347;UBERON:0002385!9.68e-15!63;UBERON:0001015!9.68e-15!63;UBERON:0000383!9.68e-15!63;UBERON:0001134!4.20e-14!61;UBERON:0002036!4.20e-14!61;UBERON:0003082!4.20e-14!61;UBERON:0000486!4.71e-13!82;UBERON:0005256!5.72e-12!143;UBERON:0003102!1.79e-11!95;UBERON:0007023!2.62e-11!115;UBERON:0000468!3.07e-11!659;UBERON:0000477!2.24e-09!286;UBERON:0007100!3.25e-09!27;UBERON:0002199!3.38e-09!45;UBERON:0002416!3.38e-09!45;UBERON:0000948!3.42e-09!24;UBERON:0005498!3.42e-09!24;UBERON:0004140!3.42e-09!24;UBERON:0009881!3.42e-09!24;UBERON:0004141!3.42e-09!24;UBERON:0003084!3.42e-09!24;UBERON:0007005!3.42e-09!24;UBERON:0004139!3.42e-09!24;UBERON:0004291!3.42e-09!24;UBERON:0000119!1.12e-08!312;UBERON:0002100!2.07e-08!216;UBERON:0000483!2.58e-08!309;UBERON:0000480!5.47e-08!626;UBERON:0000467!6.05e-08!625;UBERON:0002097!1.33e-07!40;UBERON:0004872!1.50e-07!84;UBERON:0000479!3.04e-07!787;UBERON:0004111!6.87e-07!241;UBERON:0004573!8.52e-07!33;UBERON:0004571!8.52e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.38e-08;25!UBERON:0000948;1.47e-08;22!UBERON:0002385;1.46e-07;31!UBERON:0001015;1.46e-07;31!UBERON:0000383;1.46e-07;31!UBERON:0002384;1.63e-07;198!UBERON:0002204;9.64e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.05e-18,73;UBERON:0002329,1.28e-17,71;UBERON:0003059,1.28e-17,71;UBERON:0007282,1.28e-17,71;UBERON:0004290,1.28e-17,71;UBERON:0009618,1.28e-17,71;UBERON:0003077,1.34e-17,72;UBERON:0007285,1.34e-17,72;UBERON:0002385,3.36e-15,64;UBERON:0001015,3.36e-15,64;UBERON:0000383,3.36e-15,64;UBERON:0007503,6.85e-15,78;UBERON:0001134,1.53e-14,62;UBERON:0002036,1.53e-14,62;UBERON:0003082,1.53e-14,62;UBERON:0000486,1.01e-13,83;UBERON:0003104,5.76e-13,160;UBERON:0009142,5.76e-13,160;UBERON:0010314,1.24e-12,132;UBERON:0005256,4.43e-12,122;UBERON:0007023,9.16e-12,114;UBERON:0003102,1.09e-10,99;UBERON:0002199,4.47e-10,46;UBERON:0002416,4.47e-10,46;UBERON:0007100,1.91e-09,27;UBERON:0000948,2.01e-09,24;UBERON:0005498,2.01e-09,24;UBERON:0004140,2.01e-09,24;UBERON:0009881,2.01e-09,24;UBERON:0004141,2.01e-09,24;UBERON:0003084,2.01e-09,24;UBERON:0007005,2.01e-09,24;UBERON:0004139,2.01e-09,24;UBERON:0004291,2.01e-09,24;UBERON:0000479,2.17e-09,773;UBERON:0000119,4.70e-09,309;UBERON:0000483,1.12e-08,306;UBERON:0002097,2.09e-08,41;UBERON:0004872,8.58e-08,83;UBERON:0004573,4.29e-07,33;UBERON:0004571,4.29e-07,33;UBERON:0000490,5.98e-07,148 | |||
|phase1_expression=54.1401570226259,61.6609508806031,51.0254942827416,71.0520418307226,55.870136803411,52.3403114460221,25.3299878168311,65.0671469629636,57.7220238321643,22.8532560946403,0,0,0.263766978228454,246.542575096413,182.93135140181,32.943932176137,27.7239482891029,15.3365118981348,23.9087071407348,1.84681587115182,1.02000345622126,1.88072832886853,15.170507317946,6.98059567871709,2.88748071068046,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.6863920421339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,160.912531767215,157.614702030354,70.8358592613158,112.769015543985,183.489675292736,96.3229351089478,30.2208659879418,47.2035824193557,0.189069634328136,0.665188192387692,1.22968699970376,24.1001498915791,0,0,0,0,0,0,0,0,0,4.30117297553062,0,0,0,0,0,0,1.06729878806013,0,0,0,0,0,0,0,0,0,0,0,0.916008719652036,0,0,0,36.2789524737583,82.8163546286352,83.8150114547675,425.66554519124,98.9524786333416,20.1843936051231,6.4049397437823,1.97334038733728,209.756237859442,69.10657477175,79.7694087193679,123.356303530619,129.639583008,9.60717870518566,40.892970064772,35.3692529357559,66.2057654844479,74.5709066387907,70.9003496332416,86.5176969285851,141.274686508386,114.727252369191,178.960252996426,247.104594314667,99.895839428537,9.10161361938026,2.87447256726495,127.598774377182,140.633216336088,98.6348251123691,113.695203808137,49.6510229194412,70.1611735093807,31.6475791016459,162.527009934109,115.107432573208,91.3426493997712,235.87160152234,194.563175202173,91.720032256244,65.6992502850512,160.506291961444,87.8881786554012,156.004072482863,143.045542490133,266.069409523764,245.666638021497,67.1008974196084,57.3114802009448,0,0,0,0,0.132529768321485,9.29551542956147,3.10983165046111,7.0649838245176,0,42.2413737290503,41.8106609825375,23.4829366299217,107.268991375387,70.0223097219498,0,0,0,0,0,0,0,0,0,0,0,35.8069389858318,39.6923520740963,1.26755034821831,2.94848165003288,49.0355622545565,0,1.22988438543114,15.7842385474644,0,0,0,0,3.9096996637239,33.2779131289465,2.88662684050547,10.8974580676572,2.7003999674239,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91691339582606,0,0,3.10992173311158,0.432359860250884,2.01987893482208,5.39732101483437,0,0,10.2643467613623,1.54241239054985,0,0,26.4629359055051,8.7192013766656,40.2627189157016,17.4516816273,32.1890801266694,25.35908257668,30.848821523845,22.8816361205005,10.0310875962235,2.83698264046557,3.19706614819319,347.579502582957,86.2768352572394,21.4042487563,17.264017767568,302.793940328649,34.0539305361375,37.0770433783291,6.10073421020206,14.3961107302162,0,0,0,8.38686994220539,10.3375742250703,1.42636905040718,33.4444818402108,6.1642896765115,0.179060963239896,0,0,0,0,104.686985179655,36.4391590801341,14.6924874427762,9.21339459338918,17.2243462946354,0,0,0,314.703676259594,121.541436617502,94.9427582949075,57.8158995055644,53.7071256279457,16.4010511635292,91.6045865243017,31.5993404714105,13.6444502433591,25.8682678231262,56.4591758755121,21.755561887921,89.4901229021253,5.09083009403126,5.83343820478455,0,0,0,0,0,6.65258645325297,18.856193394227,28.0835411117154,17.1202657604175,17.1706460002639,30.1907276949355,16.2462460355044,34.1361552823479,63.0717647652861,85.7623133262404,105.615522633759,73.7341289440742,69.2613855621357,2.53804844142407,0,0.0920809889358963,52.1257594667315,16.2061139525978,40.1240709775838,0.451199612907412,0,0.784349769176855,0,0,0,0,0,1.54227252690289,2.16757150035082,1.50506932156456,0,0,0,0,0,0.512900250232778,0,0.976135183992909,39.4647074610776,8.33282129846925,7.34334549293233,5.16838984196555,3.90036147621913,73.9146077283134,34.2214342754112,10.4753059637958,22.2580328352888,24.5349099022464,61.9814812889939,29.2933721706742,14.8294331704016,76.7456147274876,0,0.192190067365106,0.255225424989168,0,10.2266020845403,199.905840237456,97.585217822484,142.927581201705,31.4060557887043,92.2128971599577,24.2774727026135,16.745611748813,16.3749682518254,12.0224181393116,34.5040651002123,5.62975140884935,53.4923735042401,229.742745002526,18.8387673647815,65.2937021027432,85.9300903073851,64.4433840830905,26.2837226045311,38.042477081522,49.2872393799608,11.2155759990606,113.570486168179,36.9775513648644,68.5229555268088,71.1269322727175,212.455259246056,135.0845091688,47.7676062173678,42.0912849843612,8.10285747973363,110.190318343834,0,7.12594045629425,11.8312153063541,66.3994560704758,32.6186816163562,0,61.3736640842134,118.642491037287,155.427189477074,40.2241564191658,34.6435373042533,0,1.34060455107157,0,40.2935467324615,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,182.067746776273,0,0,0,152.438274625364,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,85.4142685155142,0,0,0,0,2.37571744666111,0,16.9005100120271,19.8343877138823,11.9100314374509,0,0,40.048845638465,35.640625103518,0,0,0,45.1007402109621,0,0,0,87.3980573943232,0,53.3457552694257,11.6319929531426,11.5032441720696,17.965241820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| ||
|short_description=p2@PDGFRA | |||
}} | }} |
Latest revision as of 00:47, 18 September 2015
Short description: | p2@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PDGFRA_5end |
Coexpression cluster: | C1941_Fibroblast_Nucleus_Mesenchymal_tenocyte_Anulus_Smooth_acute |
Association with transcript: | 0bp_to_ENST00000508170, ENST00000509092, ENST00000512143_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | D6RJH0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.19e-25 | 76 |
muscle cell | 2.84e-14 | 55 |
muscle precursor cell | 8.53e-14 | 58 |
myoblast | 8.53e-14 | 58 |
multi-potent skeletal muscle stem cell | 8.53e-14 | 58 |
skin fibroblast | 3.88e-13 | 23 |
electrically responsive cell | 1.17e-12 | 61 |
electrically active cell | 1.17e-12 | 61 |
smooth muscle cell | 2.98e-11 | 43 |
smooth muscle myoblast | 2.98e-11 | 43 |
vascular associated smooth muscle cell | 3.65e-08 | 32 |
cardiocyte | 3.64e-07 | 16 |
multi fate stem cell | 8.80e-07 | 427 |