FFCP PHASE1:Hg19::chr2:65159562..65159594,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=400958 | |EntrezGene=400958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_036586_5end | |association_with_transcript=0bp_to_NR_036586_5end | ||
|cluster_id=chr2:65159562..65159594,- | |||
|coexpression_cluster_id=C782 | |coexpression_cluster_id=C782 | ||
|description=CAGE_peak_1_at_LOC400958_5end | |description=CAGE_peak_1_at_LOC400958_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000945!2.16e-64!24;CL:0000826!2.16e-64!24;CL:0000236!2.15e-35!14;CL:0000542!4.83e-28!53;CL:0000051!4.83e-28!53;CL:0000838!4.48e-26!52;CL:0002087!6.78e-25!119;CL:0000738!1.05e-19!140;CL:0002031!3.57e-19!124;CL:0000037!1.36e-18!172;CL:0000566!1.36e-18!172;CL:0002032!1.59e-17!165;CL:0000837!1.59e-17!165;CL:0000988!5.36e-17!182;CL:0000840!1.68e-07!5;CL:0001029!1.68e-07!5;CL:0000785!2.18e-07!2;CL:0000955!2.18e-07!2;CL:0000818!2.18e-07!2;CL:0000954!2.18e-07!2;CL:0000816!2.18e-07!2 | |ontology_enrichment_celltype=CL:0000945!2.16e-64!24;CL:0000826!2.16e-64!24;CL:0000236!2.15e-35!14;CL:0000542!4.83e-28!53;CL:0000051!4.83e-28!53;CL:0000838!4.48e-26!52;CL:0002087!6.78e-25!119;CL:0000738!1.05e-19!140;CL:0002031!3.57e-19!124;CL:0000037!1.36e-18!172;CL:0000566!1.36e-18!172;CL:0002032!1.59e-17!165;CL:0000837!1.59e-17!165;CL:0000988!5.36e-17!182;CL:0000840!1.68e-07!5;CL:0001029!1.68e-07!5;CL:0000785!2.18e-07!2;CL:0000955!2.18e-07!2;CL:0000818!2.18e-07!2;CL:0000954!2.18e-07!2;CL:0000816!2.18e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.27e-114;24!CL:0000236;3.29e-57;13!CL:0000542;4.44e-32;53!CL:0000235;2.29e-08;6!CL:0002087;1.09e-07;104!CL:0000946;7.60e-07;1!CL:0000786;7.60e-07;1 | |ontology_enrichment_celltype_v019=CL:0000945;2.27e-114;24!CL:0000236;3.29e-57;13!CL:0000542;4.44e-32;53!CL:0000235;2.29e-08;6!CL:0002087;1.09e-07;104!CL:0000946;7.60e-07;1!CL:0000786;7.60e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.85e-114,24;CL:0000826,1.85e-114,24;CL:0000236,2.21e-62,14;CL:0000542,8.93e-54,53;CL:0000051,8.93e-54,53;CL:0000838,4.14e-50,52;CL:0002087,3.21e-28,115;CL:0002031,1.49e-24,120;CL:0000738,5.27e-23,136;CL:0002032,3.57e-20,161;CL:0000837,3.57e-20,161;CL:0000037,4.31e-19,168;CL:0000988,7.97e-18,177;CL:0000785,6.15e-12,2;CL:0000955,6.15e-12,2;CL:0000818,6.15e-12,2;CL:0000954,6.15e-12,2;CL:0000816,6.15e-12,2;CL:0000235,2.26e-08,6;CL:0000817,3.08e-08,3;CL:0000946,7.19e-07,1;CL:0000786,7.19e-07,1;CL:0000980,7.19e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;4.44e-32;53!CL:0000954;6.67e-12;2!UBERON:0004872;1.82e-07;7 | |ontology_enrichment_development_v019=CL:0000051;4.44e-32;53!CL:0000954;6.67e-12;2!UBERON:0004872;1.82e-07;7 | ||
|ontology_enrichment_disease=DOID:0060058!5.55e-11!10 | |ontology_enrichment_disease=DOID:0060058!5.55e-11!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;3.66e-19;10!DOID:12603;6.25e-07;1!DOID:630;7.60e-07;1!DOID:0050177;7.60e-07;1!DOID:0050427;7.60e-07;1 | |ontology_enrichment_disease_v019=DOID:0060058;3.66e-19;10!DOID:12603;6.25e-07;1!DOID:630;7.60e-07;1!DOID:0050177;7.60e-07;1!DOID:0050427;7.60e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.17e-19,10;DOID:12603,6.08e-07,1;DOID:630,7.60e-07,1;DOID:0050177,7.60e-07,1;DOID:0050427,7.60e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002193!2.25e-10!112;UBERON:0002106!3.66e-10!3;UBERON:0004854!3.66e-10!3;UBERON:0009034!3.66e-10!3;UBERON:0002095!3.66e-10!3;UBERON:0004782!3.66e-10!3;UBERON:0003281!3.66e-10!3;UBERON:0009664!3.66e-10!3;UBERON:0002296!3.66e-10!3;UBERON:0005602!3.66e-10!3;UBERON:0001179!3.66e-10!3;UBERON:0006293!3.66e-10!3;UBERON:0002390!8.36e-10!102;UBERON:0003061!8.36e-10!102;UBERON:0000178!2.45e-08!15;UBERON:0000179!2.45e-08!15;UBERON:0000463!2.45e-08!15;UBERON:0004177!3.87e-07!7 | |ontology_enrichment_uberon=UBERON:0002193!2.25e-10!112;UBERON:0002106!3.66e-10!3;UBERON:0004854!3.66e-10!3;UBERON:0009034!3.66e-10!3;UBERON:0002095!3.66e-10!3;UBERON:0004782!3.66e-10!3;UBERON:0003281!3.66e-10!3;UBERON:0009664!3.66e-10!3;UBERON:0002296!3.66e-10!3;UBERON:0005602!3.66e-10!3;UBERON:0001179!3.66e-10!3;UBERON:0006293!3.66e-10!3;UBERON:0002390!8.36e-10!102;UBERON:0003061!8.36e-10!102;UBERON:0000178!2.45e-08!15;UBERON:0000179!2.45e-08!15;UBERON:0000463!2.45e-08!15;UBERON:0004177!3.87e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;8.48e-17;3!UBERON:0002390;8.11e-11;32!UBERON:0004177;2.79e-10;5!UBERON:0005057;2.79e-10;5 | |ontology_enrichment_uberon_v019=UBERON:0002106;8.48e-17;3!UBERON:0002390;8.11e-11;32!UBERON:0004177;2.79e-10;5!UBERON:0005057;2.79e-10;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,7.22e-17,3;UBERON:0004854,7.22e-17,3;UBERON:0009034,7.22e-17,3;UBERON:0002095,7.22e-17,3;UBERON:0004782,7.22e-17,3;UBERON:0003281,7.22e-17,3;UBERON:0009664,7.22e-17,3;UBERON:0002296,7.22e-17,3;UBERON:0005602,7.22e-17,3;UBERON:0001179,7.22e-17,3;UBERON:0006293,7.22e-17,3;UBERON:0004177,1.70e-07,7;UBERON:0005057,1.70e-07,7 | |||
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| ||
|short_description=p1@LOC400958 | |short_description=p1@LOC400958 | ||
}} | }} |
Latest revision as of 00:12, 18 September 2015
Short description: | p1@LOC400958 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC400958_5end |
Coexpression cluster: | C782_B_Burkitt_lymphoma_splenic_acute_CD19_xeroderma |
Association with transcript: | 0bp_to_NR_036586_5end |
EntrezGene: | LOC400958 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.85e-114 | 24 |
pro-B cell | 1.85e-114 | 24 |
B cell | 2.21e-62 | 14 |
lymphocyte | 8.93e-54 | 53 |
common lymphoid progenitor | 8.93e-54 | 53 |
lymphoid lineage restricted progenitor cell | 4.14e-50 | 52 |
nongranular leukocyte | 3.21e-28 | 115 |
hematopoietic lineage restricted progenitor cell | 1.49e-24 | 120 |
leukocyte | 5.27e-23 | 136 |
hematopoietic oligopotent progenitor cell | 3.57e-20 | 161 |
hematopoietic multipotent progenitor cell | 3.57e-20 | 161 |
hematopoietic stem cell | 4.31e-19 | 168 |
hematopoietic cell | 7.97e-18 | 177 |
mature B cell | 6.15e-12 | 2 |
pre-B-II cell | 6.15e-12 | 2 |
transitional stage B cell | 6.15e-12 | 2 |
small pre-B-II cell | 6.15e-12 | 2 |
immature B cell | 6.15e-12 | 2 |
macrophage | 2.26e-08 | 6 |
precursor B cell | 3.08e-08 | 3 |
antibody secreting cell | 7.19e-07 | 1 |
plasma cell | 7.19e-07 | 1 |
plasmablast | 7.19e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 7.22e-17 | 3 |
gastrointestinal system mesentery | 7.22e-17 | 3 |
stomach region | 7.22e-17 | 3 |
mesentery | 7.22e-17 | 3 |
gastrointestinal system serosa | 7.22e-17 | 3 |
mesentery of stomach | 7.22e-17 | 3 |
gut mesentery | 7.22e-17 | 3 |
dorsal mesentery | 7.22e-17 | 3 |
dorsal mesogastrium | 7.22e-17 | 3 |
peritoneal cavity | 7.22e-17 | 3 |
spleen primordium | 7.22e-17 | 3 |
hemopoietic organ | 1.70e-07 | 7 |
immune organ | 1.70e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.17e-19 | 10 |
acute leukemia | 6.08e-07 | 1 |
genetic disease | 7.60e-07 | 1 |
monogenic disease | 7.60e-07 | 1 |
xeroderma pigmentosum | 7.60e-07 | 1 |