FFCP PHASE1:Hg19::chr2:166060606..166060607,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:166060606..166060607,- to FFCP PHASE1:Hg19::chr2:166060606..166060607,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6328 | |EntrezGene=6328 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10590 | |HGNC=10590 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NY46,Q9C007 | |UniProt=Q9NY46,Q9C007 | ||
|association_with_transcript=-29bp_to_ENST00000360093,NM_001081676,NM_001081677,NM_006922,uc002ucx.2,uc002ucy.2,uc002ucz.2_5end | |||
|cluster_id=chr2:166060606..166060607,- | |||
|coexpression_cluster_id=C1179 | |||
|description=CAGE_peak_6_at_SCN3A_5end | |||
|id=chr2:166060606..166060607,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;3.92e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002619;4.90e-40;22!UBERON:0003528;1.36e-38;34!UBERON:0002020;1.36e-38;34!UBERON:0002791;4.06e-38;32!UBERON:0001869;2.41e-36;32!UBERON:0000956;2.58e-35;25!UBERON:0000203;2.58e-35;25!UBERON:0001893;3.13e-32;34!UBERON:0002780;3.85e-27;41!UBERON:0001890;3.85e-27;41!UBERON:0001950;1.31e-26;20!UBERON:0000073;1.06e-25;53!UBERON:0002616;1.06e-25;53!UBERON:0001954;1.21e-24;2!UBERON:0003022;1.21e-24;2!UBERON:0002421;1.21e-24;2!UBERON:0002600;1.21e-24;2!UBERON:0005383;8.88e-17;3!UBERON:0005382;8.88e-17;3!UBERON:0001017;6.97e-15;75!UBERON:0001874;1.93e-13;1!UBERON:0000955;5.12e-13;68!UBERON:0000369;7.92e-13;4!UBERON:0002435;7.92e-13;4!UBERON:0000204;7.92e-13;4!UBERON:0000125;2.18e-12;9!UBERON:0002308;2.18e-12;9!UBERON:0001872;1.90e-10;5!UBERON:0000349;1.90e-10;5!UBERON:0001016;1.93e-10;83!UBERON:0002021;2.84e-10;5!UBERON:0000200;1.04e-08;6!UBERON:0009663;1.04e-07;7!UBERON:0001871;1.38e-07;6!UBERON:0002771;3.92e-07;2!UBERON:0000007;3.92e-07;2!UBERON:0001873;3.92e-07;2!UBERON:0002148;3.92e-07;2!UBERON:0002702;3.92e-07;2!UBERON:0006331;3.92e-07;2!UBERON:0009662;3.92e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,1.93e-46,34;UBERON:0002020,1.93e-46,34;UBERON:0001049,3.79e-44,56;UBERON:0005068,3.79e-44,56;UBERON:0006241,3.79e-44,56;UBERON:0007135,3.79e-44,56;UBERON:0002791,1.66e-41,32;UBERON:0001869,1.66e-41,32;UBERON:0000073,1.54e-40,53;UBERON:0002616,1.54e-40,53;UBERON:0002619,5.40e-40,22;UBERON:0001893,4.59e-39,34;UBERON:0002780,1.74e-38,41;UBERON:0001890,1.74e-38,41;UBERON:0003080,1.74e-38,41;UBERON:0006240,1.74e-38,41;UBERON:0000956,2.81e-35,25;UBERON:0000203,2.81e-35,25;UBERON:0000955,6.76e-31,68;UBERON:0006238,6.76e-31,68;UBERON:0001017,8.80e-30,81;UBERON:0003075,8.80e-30,82;UBERON:0007284,8.80e-30,82;UBERON:0002346,2.48e-28,86;UBERON:0001016,1.07e-26,89;UBERON:0001950,1.40e-26,20;UBERON:0003056,1.32e-25,61;UBERON:0001954,1.29e-24,2;UBERON:0003022,1.29e-24,2;UBERON:0002421,1.29e-24,2;UBERON:0002600,1.29e-24,2;UBERON:0010371,3.62e-23,104;UBERON:0010314,6.71e-18,132;UBERON:0005383,5.30e-17,3;UBERON:0005382,5.30e-17,3;UBERON:0001874,1.61e-13,1;UBERON:0007023,2.90e-13,114;UBERON:0004121,3.15e-13,171;UBERON:0000924,3.15e-13,171;UBERON:0006601,3.15e-13,171;UBERON:0000369,5.39e-13,4;UBERON:0002435,5.39e-13,4;UBERON:0000204,5.39e-13,4;UBERON:0010082,5.39e-13,4;UBERON:0000125,2.06e-12,9;UBERON:0002308,2.06e-12,9;UBERON:0000025,9.90e-12,192;UBERON:0011216,3.20e-11,223;UBERON:0000349,1.95e-10,5;UBERON:0001872,2.25e-10,5;UBERON:0002021,3.27e-10,5;UBERON:0004111,5.47e-09,240;UBERON:0000200,7.62e-09,6;UBERON:0009663,8.35e-08,7;UBERON:0001871,1.25e-07,6;UBERON:0003076,1.47e-07,15;UBERON:0003057,1.47e-07,15;UBERON:0002771,2.74e-07,2;UBERON:0001873,2.91e-07,2;UBERON:0010122,2.91e-07,2;UBERON:0002702,3.48e-07,2;UBERON:0000007,4.98e-07,2;UBERON:0002148,5.28e-07,2;UBERON:0006331,5.28e-07,2;UBERON:0009662,5.28e-07,2 | |||
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| ||
|short_description=p6@SCN3A | |||
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Latest revision as of 23:33, 17 September 2015
Short description: | p6@SCN3A |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SCN3A_5end |
Coexpression cluster: | C1179_parietal_putamen_occipital_medial_caudate_hippocampus_amygdala |
Association with transcript: | -29bp_to_ENST00000360093, NM_001081676, NM_001081677, NM_006922, uc002ucx.2, uc002ucy.2, uc002ucz.2_5end |
EntrezGene: | SCN3A |
HGNC: | 10590 |
UniProt: | Q9NY46Q9C007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data