FFCP PHASE1:Hg19::chr17:76850381..76850397,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7077 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11821 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=304bp_to_BC010410_5end | |||
|cluster_id=chr17:76850381..76850397,- | |||
|coexpression_cluster_id=C706 | |||
|description=CAGE_peak_3_at_TIMP2_5end | |||
|id=chr17:76850381..76850397,- | |||
|ontology_enrichment_celltype=CL:0000055!9.12e-27!180;CL:0000057!1.39e-16!75;CL:0000222!1.54e-10!119;CL:0000183!5.46e-10!59;CL:0000680!1.07e-09!57;CL:0000056!1.07e-09!57;CL:0000355!1.07e-09!57;CL:0000192!3.21e-09!42;CL:0000514!3.21e-09!42;CL:0000187!6.55e-09!54;CL:0000393!3.69e-08!60;CL:0000211!3.69e-08!60;CL:0002334!5.18e-07!12;CL:0000499!5.73e-07!27;CL:0000048!7.63e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.60e-10;55!CL:0000723;7.84e-09;61!CL:0000048;1.35e-08;58!CL:0002334;8.63e-08;12!CL:0000349;1.13e-07;19!CL:0000499;1.18e-07;28!CL:0000192;1.77e-07;43!CL:0000057;3.38e-07;73!CL:0002320;4.96e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.56e-18,76;CL:0000048,8.93e-12,427;CL:0000723,1.00e-10,433;CL:0000680,2.31e-10,58;CL:0000056,2.31e-10,58;CL:0000355,2.31e-10,58;CL:0000192,4.32e-10,43;CL:0000514,4.32e-10,43;CL:0000222,8.48e-10,121;CL:0000187,1.78e-09,55;CL:0000034,2.05e-09,441;CL:0000393,2.13e-08,61;CL:0000211,2.13e-08,61;CL:0002334,8.29e-08,12;CL:0000499,8.94e-08,28;CL:0000349,2.10e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.77e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;5.47e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.85e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!2.11e-13!659;UBERON:0000467!9.34e-11!625;UBERON:0000480!1.25e-10!626;UBERON:0000914!7.50e-10!83;UBERON:0002329!7.50e-10!83;UBERON:0003077!7.50e-10!83;UBERON:0003059!7.50e-10!83;UBERON:0007282!7.50e-10!83;UBERON:0009618!7.50e-10!83;UBERON:0007285!7.50e-10!83;UBERON:0005256!1.14e-09!143;UBERON:0000926!2.75e-09!448;UBERON:0004120!2.75e-09!448;UBERON:0006603!2.75e-09!448;UBERON:0004290!2.79e-09!70;UBERON:0002385!7.66e-09!63;UBERON:0001015!7.66e-09!63;UBERON:0000383!7.66e-09!63;UBERON:0001134!9.57e-09!61;UBERON:0002036!9.57e-09!61;UBERON:0003082!9.57e-09!61;UBERON:0002049!9.02e-08!79;UBERON:0007798!9.02e-08!79;UBERON:0000475!1.17e-07!365;UBERON:0004872!2.65e-07!84;UBERON:0002100!2.83e-07!216;UBERON:0004923!4.08e-07!57;UBERON:0000486!4.23e-07!82;UBERON:0002199!8.22e-07!45;UBERON:0002416!8.22e-07!45;UBERON:0000055!9.01e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.48e-07;198!UBERON:0005631;9.63e-07;10!UBERON:0000158;9.63e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.78e-11,315;UBERON:0004120,2.78e-11,315;UBERON:0006603,2.78e-11,315;UBERON:0007524,2.42e-10,73;UBERON:0003077,6.36e-10,72;UBERON:0007285,6.36e-10,72;UBERON:0007503,6.90e-10,78;UBERON:0002329,7.58e-10,71;UBERON:0003059,7.58e-10,71;UBERON:0007282,7.58e-10,71;UBERON:0004290,7.58e-10,71;UBERON:0009618,7.58e-10,71;UBERON:0001134,1.88e-09,62;UBERON:0002036,1.88e-09,62;UBERON:0003082,1.88e-09,62;UBERON:0002385,2.11e-09,64;UBERON:0001015,2.11e-09,64;UBERON:0000383,2.11e-09,64;UBERON:0005256,2.09e-08,122;UBERON:0003104,8.67e-08,160;UBERON:0009142,8.67e-08,160;UBERON:0000486,1.10e-07,83;UBERON:0002199,4.77e-07,46;UBERON:0002416,4.77e-07,46 | |||
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| |||
|short_description=p3@TIMP2 | |||
}} |
Latest revision as of 23:07, 17 September 2015
Short description: | p3@TIMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TIMP2_5end |
Coexpression cluster: | C706_Adipocyte_Preadipocyte_tenocyte_leiomyoma_chorionic_Olfactory_Hair |
Association with transcript: | 304bp_to_BC010410_5end |
EntrezGene: | TIMP2 |
HGNC: | 11821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.56e-18 | 76 |
multi fate stem cell | 8.93e-12 | 427 |
somatic stem cell | 1.00e-10 | 433 |
muscle precursor cell | 2.31e-10 | 58 |
myoblast | 2.31e-10 | 58 |
multi-potent skeletal muscle stem cell | 2.31e-10 | 58 |
smooth muscle cell | 4.32e-10 | 43 |
smooth muscle myoblast | 4.32e-10 | 43 |
mesodermal cell | 8.48e-10 | 121 |
muscle cell | 1.78e-09 | 55 |
stem cell | 2.05e-09 | 441 |
electrically responsive cell | 2.13e-08 | 61 |
electrically active cell | 2.13e-08 | 61 |
preadipocyte | 8.29e-08 | 12 |
stromal cell | 8.94e-08 | 28 |
extraembryonic cell | 2.10e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.78e-11 | 315 |
mesoderm-derived structure | 2.78e-11 | 315 |
presumptive mesoderm | 2.78e-11 | 315 |
dense mesenchyme tissue | 2.42e-10 | 73 |
paraxial mesoderm | 6.36e-10 | 72 |
presumptive paraxial mesoderm | 6.36e-10 | 72 |
epithelial vesicle | 6.90e-10 | 78 |
somite | 7.58e-10 | 71 |
presomitic mesoderm | 7.58e-10 | 71 |
presumptive segmental plate | 7.58e-10 | 71 |
dermomyotome | 7.58e-10 | 71 |
trunk paraxial mesoderm | 7.58e-10 | 71 |
skeletal muscle tissue | 1.88e-09 | 62 |
striated muscle tissue | 1.88e-09 | 62 |
myotome | 1.88e-09 | 62 |
muscle tissue | 2.11e-09 | 64 |
musculature | 2.11e-09 | 64 |
musculature of body | 2.11e-09 | 64 |
trunk mesenchyme | 2.09e-08 | 122 |
mesenchyme | 8.67e-08 | 160 |
entire embryonic mesenchyme | 8.67e-08 | 160 |
multilaminar epithelium | 1.10e-07 | 83 |
integument | 4.77e-07 | 46 |
integumental system | 4.77e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.85e-07 | 14 |