FFCP PHASE1:Hg19::chr2:64069042..64069056,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:64069042..64069056,+
|short_description=p5@UGP2
|description=CAGE_peak_5_at_UGP2_5end
|association_with_transcript=6bp_to_ENST00000488245_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7360 | |EntrezGene=7360 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12527 | |HGNC=12527 | ||
|TSSclassifier=strong | |||
|UniProt=C9JUW1 | |UniProt=C9JUW1 | ||
|association_with_transcript=6bp_to_ENST00000488245_5end | |||
|cluster_id=chr2:64069042..64069056,+ | |||
|coexpression_cluster_id=C4241 | |||
|description=CAGE_peak_5_at_UGP2_5end | |||
|id=chr2:64069042..64069056,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.83e-17!180;CL:0000057!1.36e-11!75;CL:0002620!1.95e-09!23;CL:0000393!1.79e-08!60;CL:0000211!1.79e-08!60;CL:0000034!1.97e-08!444;CL:0000680!2.89e-08!57;CL:0000056!2.89e-08!57;CL:0000355!2.89e-08!57;CL:0000048!1.78e-07!430;CL:0000144!1.97e-07!625;CL:0000723!2.09e-07!436;CL:0000187!2.31e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.44e-10;23!CL:0000134;1.54e-08;55!CL:0000723;2.35e-08;61!CL:0000048;1.16e-07;58!CL:0000034;2.13e-07;69!CL:0000136;4.82e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.93e-13,76;CL:0000034,1.90e-10,441;CL:0002620,6.59e-10,23;CL:0000680,1.92e-09,58;CL:0000056,1.92e-09,58;CL:0000355,1.92e-09,58;CL:0000393,2.05e-09,61;CL:0000211,2.05e-09,61;CL:0000723,4.36e-09,433;CL:0000048,5.02e-09,427;CL:0000187,2.10e-08,55;CL:0000136,7.08e-08,15;CL:0000359,8.91e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.36e-15!83;UBERON:0002329!1.36e-15!83;UBERON:0003077!1.36e-15!83;UBERON:0003059!1.36e-15!83;UBERON:0007282!1.36e-15!83;UBERON:0009618!1.36e-15!83;UBERON:0007285!1.36e-15!83;UBERON:0004290!6.94e-12!70;UBERON:0000486!4.77e-11!82;UBERON:0001134!2.30e-09!61;UBERON:0002036!2.30e-09!61;UBERON:0003082!2.30e-09!61;UBERON:0003102!3.34e-09!95;UBERON:0002385!5.19e-09!63;UBERON:0001015!5.19e-09!63;UBERON:0000383!5.19e-09!63;UBERON:0005256!1.32e-08!143;UBERON:0002199!2.26e-08!45;UBERON:0002416!2.26e-08!45;UBERON:0002097!2.96e-08!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.53e-07;31!UBERON:0001015;2.53e-07;31!UBERON:0000383;2.53e-07;31!UBERON:0000075;6.11e-07;16!UBERON:0002097;6.60e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.28e-13,71;UBERON:0003059,1.28e-13,71;UBERON:0007282,1.28e-13,71;UBERON:0004290,1.28e-13,71;UBERON:0009618,1.28e-13,71;UBERON:0007524,1.66e-13,73;UBERON:0003077,4.08e-13,72;UBERON:0007285,4.08e-13,72;UBERON:0000486,1.95e-12,83;UBERON:0003102,3.63e-11,99;UBERON:0007503,5.83e-11,78;UBERON:0001134,1.03e-10,62;UBERON:0002036,1.03e-10,62;UBERON:0003082,1.03e-10,62;UBERON:0002385,8.17e-10,64;UBERON:0001015,8.17e-10,64;UBERON:0000383,8.17e-10,64;UBERON:0002199,2.97e-09,46;UBERON:0002416,2.97e-09,46;UBERON:0005256,3.77e-09,122;UBERON:0003104,7.39e-09,160;UBERON:0009142,7.39e-09,160;UBERON:0002097,7.63e-09,41;UBERON:0000075,6.44e-07,16 | |||
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| ||
|short_description=p5@UGP2 | |||
}} | }} |
Latest revision as of 22:49, 17 September 2015
Short description: | p5@UGP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_UGP2_5end |
Coexpression cluster: | C4241_mature_Hepatocyte_iPS_H9_HES3GFP_Olfactory_liver |
Association with transcript: | 6bp_to_ENST00000488245_5end |
EntrezGene: | UGP2 |
HGNC: | 12527 |
UniProt: | C9JUW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.93e-13 | 76 |
stem cell | 1.90e-10 | 441 |
skin fibroblast | 6.59e-10 | 23 |
muscle precursor cell | 1.92e-09 | 58 |
myoblast | 1.92e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.92e-09 | 58 |
electrically responsive cell | 2.05e-09 | 61 |
electrically active cell | 2.05e-09 | 61 |
somatic stem cell | 4.36e-09 | 433 |
multi fate stem cell | 5.02e-09 | 427 |
muscle cell | 2.10e-08 | 55 |
fat cell | 7.08e-08 | 15 |
vascular associated smooth muscle cell | 8.91e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
somite | 1.28e-13 | 71 |
presomitic mesoderm | 1.28e-13 | 71 |
presumptive segmental plate | 1.28e-13 | 71 |
dermomyotome | 1.28e-13 | 71 |
trunk paraxial mesoderm | 1.28e-13 | 71 |
dense mesenchyme tissue | 1.66e-13 | 73 |
paraxial mesoderm | 4.08e-13 | 72 |
presumptive paraxial mesoderm | 4.08e-13 | 72 |
multilaminar epithelium | 1.95e-12 | 83 |
surface structure | 3.63e-11 | 99 |
epithelial vesicle | 5.83e-11 | 78 |
skeletal muscle tissue | 1.03e-10 | 62 |
striated muscle tissue | 1.03e-10 | 62 |
myotome | 1.03e-10 | 62 |
muscle tissue | 8.17e-10 | 64 |
musculature | 8.17e-10 | 64 |
musculature of body | 8.17e-10 | 64 |
integument | 2.97e-09 | 46 |
integumental system | 2.97e-09 | 46 |
trunk mesenchyme | 3.77e-09 | 122 |
mesenchyme | 7.39e-09 | 160 |
entire embryonic mesenchyme | 7.39e-09 | 160 |
skin of body | 7.63e-09 | 41 |
subdivision of skeletal system | 6.44e-07 | 16 |