FFCP PHASE1:Hg19::chr13:73633131..73633149,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=688 | |EntrezGene=688 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6349 | |HGNC=6349 | ||
|TSSclassifier=strong | |||
|UniProt=B4DL96,Q13887,Q5T6X2 | |UniProt=B4DL96,Q13887,Q5T6X2 | ||
|association_with_transcript=0bp_to_ENST00000545883,NM_001730,uc001vje.2_5end | |association_with_transcript=0bp_to_ENST00000545883,NM_001730,uc001vje.2_5end | ||
|cluster_id=chr13:73633131..73633149,+ | |||
|coexpression_cluster_id=C1709 | |||
|description=CAGE_peak_1_at_KLF5_5end | |description=CAGE_peak_1_at_KLF5_5end | ||
|id=chr13:73633131..73633149,+ | |id=chr13:73633131..73633149,+ | ||
|ontology_enrichment_celltype=CL:0000066!8.22e-27!254;CL:0002076!7.29e-18!43;CL:0000223!2.29e-13!59;CL:0002251!5.36e-10!21 | |ontology_enrichment_celltype=CL:0000066!8.22e-27!254;CL:0002076!7.29e-18!43;CL:0000223!2.29e-13!59;CL:0002251!5.36e-10!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.06e-13;42!CL:0002251;4.66e-10;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.33e-27,253;CL:0002076,6.18e-18,42;CL:0000223,2.61e-13,58;CL:0002251,4.34e-10,20 | |||
|ontology_enrichment_development_v019=CL:0000223;3.11e-07;58!UBERON:0006595;5.03e-07;86 | |||
|ontology_enrichment_disease=DOID:305!7.60e-20!106;DOID:0050687!8.82e-15!143;DOID:299!4.22e-09!25;DOID:1749!1.73e-08!14 | |ontology_enrichment_disease=DOID:305!7.60e-20!106;DOID:0050687!8.82e-15!143;DOID:299!4.22e-09!25;DOID:1749!1.73e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:299;4.30e-09;25!DOID:1749;1.62e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.01e-19,106;DOID:0050687,1.18e-14,143;DOID:299,4.13e-09,25;DOID:1749,1.70e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.34e-19!169;UBERON:0000925!1.34e-19!169;UBERON:0006595!1.34e-19!169;UBERON:0001007!3.95e-15!155;UBERON:0001555!3.95e-15!155;UBERON:0007026!3.95e-15!155;UBERON:0004921!1.41e-14!129;UBERON:0004185!1.41e-14!129;UBERON:0001004!1.24e-12!72;UBERON:0000077!4.39e-12!130;UBERON:0000062!9.60e-12!511;UBERON:0000065!2.96e-10!53;UBERON:0000468!1.34e-09!659;UBERON:0000467!3.11e-09!625;UBERON:0000480!4.07e-09!626;UBERON:0000464!5.46e-09!104;UBERON:0008947!1.21e-08!38;UBERON:0003258!1.21e-08!38;UBERON:0005156!1.27e-08!59;UBERON:0000990!1.27e-08!59;UBERON:0000922!1.80e-08!612;UBERON:0000161!3.49e-08!35;UBERON:0002050!4.05e-08!605;UBERON:0005423!4.05e-08!605;UBERON:0001041!4.56e-08!98;UBERON:0000923!6.01e-08!604;UBERON:0005291!6.01e-08!604;UBERON:0006598!6.01e-08!604;UBERON:0002532!6.01e-08!604;UBERON:0005911!1.05e-07!82;UBERON:0000072!1.40e-07!46;UBERON:0000466!1.53e-07!126;UBERON:0000481!2.14e-07!347;UBERON:0003104!7.62e-07!238;UBERON:0009142!7.62e-07!238;UBERON:0003133!8.45e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.19e-09;33!UBERON:0000065;2.92e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.03e-20,160;UBERON:0000925,4.03e-20,160;UBERON:0006595,4.03e-20,160;UBERON:0001007,6.74e-16,145;UBERON:0001555,6.74e-16,145;UBERON:0007026,6.74e-16,145;UBERON:0004921,1.29e-15,118;UBERON:0001004,4.26e-12,74;UBERON:0000065,8.88e-10,54;UBERON:0001041,8.09e-09,87;UBERON:0005156,1.25e-08,59;UBERON:0000990,1.25e-08,59;UBERON:0008947,1.39e-08,38;UBERON:0003258,1.39e-08,38;UBERON:0000161,4.53e-08,36;UBERON:0005911,9.86e-08,82;UBERON:0000072,3.64e-07,47;UBERON:0005423,6.49e-07,581;UBERON:0003133,8.33e-07,48 | |||
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| ||
|short_description=p1@KLF5 | |short_description=p1@KLF5 | ||
}} | }} |
Latest revision as of 22:31, 17 September 2015
Short description: | p1@KLF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KLF5_5end |
Coexpression cluster: | C1709_salivary_signet_Prostate_cervical_keratoacanthoma_rectal_tubular |
Association with transcript: | 0bp_to_ENST00000545883, NM_001730, uc001vje.2_5end |
EntrezGene: | KLF5 |
HGNC: | 6349 |
UniProt: | B4DL96Q13887Q5T6X2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.33e-27 | 253 |
endo-epithelial cell | 6.18e-18 | 42 |
endodermal cell | 2.61e-13 | 58 |
epithelial cell of alimentary canal | 4.34e-10 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.03e-20 | 160 |
endoderm | 4.03e-20 | 160 |
presumptive endoderm | 4.03e-20 | 160 |
digestive system | 6.74e-16 | 145 |
digestive tract | 6.74e-16 | 145 |
primitive gut | 6.74e-16 | 145 |
subdivision of digestive tract | 1.29e-15 | 118 |
respiratory system | 4.26e-12 | 74 |
respiratory tract | 8.88e-10 | 54 |
foregut | 8.09e-09 | 87 |
reproductive structure | 1.25e-08 | 59 |
reproductive system | 1.25e-08 | 59 |
respiratory primordium | 1.39e-08 | 38 |
endoderm of foregut | 1.39e-08 | 38 |
orifice | 4.53e-08 | 36 |
endo-epithelium | 9.86e-08 | 82 |
segment of respiratory tract | 3.64e-07 | 47 |
developing anatomical structure | 6.49e-07 | 581 |
reproductive organ | 8.33e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.01e-19 | 106 |
cell type cancer | 1.18e-14 | 143 |
adenocarcinoma | 4.13e-09 | 25 |
squamous cell carcinoma | 1.70e-08 | 14 |