FFCP PHASE1:Hg19::chr4:48136217..48136273,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7294 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12434 | |||
|TSSclassifier=strong | |||
|UniProt=P42681 | |||
|association_with_transcript=0bp_to_ENST00000264316,ENST00000510457,NM_003328,uc003gxx.3,uc003gxy.1_5end | |||
|cluster_id=chr4:48136217..48136273,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_TXK_5end | |||
|id=chr4:48136217..48136273,- | |||
|ontology_enrichment_celltype=CL:0000738!1.07e-27!140;CL:0000791!1.29e-22!18;CL:0000789!1.29e-22!18;CL:0002420!1.29e-22!18;CL:0002419!1.29e-22!18;CL:0000790!1.29e-22!18;CL:0000084!3.60e-21!25;CL:0000827!3.60e-21!25;CL:0002087!1.99e-20!119;CL:0000037!9.64e-19!172;CL:0000566!9.64e-19!172;CL:0002031!4.79e-18!124;CL:0000988!1.94e-16!182;CL:0002032!1.69e-15!165;CL:0000837!1.69e-15!165;CL:0000625!1.70e-14!11;CL:0000838!1.61e-12!52;CL:0000542!4.22e-12!53;CL:0000051!4.22e-12!53;CL:0000766!1.76e-11!76;CL:0000624!1.01e-08!6;CL:0000839!1.71e-07!70;CL:0002194!2.68e-07!63;CL:0000576!2.68e-07!63;CL:0000040!2.68e-07!63;CL:0000559!2.68e-07!63;CL:0000557!2.84e-07!71;CL:0002009!7.64e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.47e-34;18!CL:0000789;3.47e-34;18!CL:0002419;3.47e-34;18!CL:0000084;1.49e-30;25!CL:0000625;1.41e-21;11!CL:0000624;1.21e-12;6!CL:0000542;3.03e-09;53!CL:0000094;1.83e-07;8!CL:0000898;3.37e-07;3!CL:0000226;5.27e-07;3!CL:0000842;5.27e-07;3!CL:0000623;5.99e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.53e-34,18;CL:0000789,3.53e-34,18;CL:0002420,3.53e-34,18;CL:0002419,3.53e-34,18;CL:0000790,3.53e-34,18;CL:0000084,1.34e-30,25;CL:0000827,1.34e-30,25;CL:0000625,1.42e-21,11;CL:0000738,6.35e-20,136;CL:0000838,3.72e-17,52;CL:0000542,1.09e-16,53;CL:0000051,1.09e-16,53;CL:0002087,6.98e-15,115;CL:0000037,1.50e-13,168;CL:0000624,1.22e-12,6;CL:0000988,3.35e-12,177;CL:0002031,6.14e-11,120;CL:0002032,5.38e-10,161;CL:0000837,5.38e-10,161;CL:0000094,1.84e-07,8;CL:0000898,3.38e-07,3;CL:0000226,5.33e-07,3;CL:0000842,5.33e-07,3;CL:0000623,5.99e-07,3;CL:0000825,5.99e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.47e-34;18!CL:0000051;3.03e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.43e-18!115;UBERON:0002390!9.08e-15!102;UBERON:0003061!9.08e-15!102;UBERON:0002193!7.86e-14!112;UBERON:0000178!4.63e-11!15;UBERON:0000179!4.63e-11!15;UBERON:0000463!4.63e-11!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.01e-17;15!UBERON:0000179;5.01e-17;15!UBERON:0000463;5.01e-17;15!UBERON:0002390;7.12e-11;32!UBERON:0002193;1.50e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.98e-17,15;UBERON:0000179,4.98e-17,15;UBERON:0000463,4.98e-17,15;UBERON:0004177,1.53e-09,7;UBERON:0005057,1.53e-09,7;UBERON:0002193,1.38e-08,108;UBERON:0002390,1.56e-08,98;UBERON:0003061,1.56e-08,98;UBERON:0002370,3.33e-08,4;UBERON:0005058,3.33e-08,4;UBERON:0009113,3.33e-08,4;UBERON:0003295,3.33e-08,4;UBERON:0005562,3.33e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,8.26064981382698,12.666370137208,6.81190942590734,0,0,0,0,0,0,12.7418943962332,6.21687787157439,13.8886957258145,1.34349284543955,14.2513213048351,1.80302897343931,0.145398238779565,0.755751887377619,0.242584061187816,0,0.822335776043652,0,0.28769239232215,0.768482119587302,0.236482229888585,0,0,0,0,0.272906150057846,0,0,1.28371610830437,0,0,0.199463657621632,1.70489900213078,0.290209238628584,1.70215567407342,0.622822248995575,0.251248665256743,0,0.217188844705117,4.23779651843358,3.31449872388808,0.632924774881769,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763890732835,0,0.764546456250458,0,4.48406850385229,0,112.91140804534,58.1655928868764,44.409923783894,108.336849013159,196.205204513421,198.374630602853,146.120046305933,11.6980979729432,47.136945195974,35.2238892387958,48.2030877501728,17.1642368432405,21.5898516949398,33.8742083483573,24.3188015651547,54.7727832039249,185.803063642062,212.694958331322,127.533339042072,35.8057522924309,68.5964683547439,62.196567632356,71.8575925335388,91.1097084966917,64.4572619317854,81.7388758225602,97.1209518051634,88.8227081411664,84.9528940555952,74.3480571418213,45.9831678275786,54.4338206706778,8.82552646085574,67.1985234016187,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.261958150995425,0,0,0.97364218096405,0.348259474598534,0.26591592103773,1.43094374583205,2.85997455390064,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,7.75560528296651,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,15.2435795831197,67.1874892288572,35.3629222769608,58.2677384710058,0,0,0,0,0,0.749007023947182,0,3.72973962092432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,77.7447778222056,55.0071212087473,42.4775680057708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0.422215270595328,0,0,0,0,2.01090682660736,0,1.31801321087491,0,0,0,0,24.8649328523763,27.5269394571255,37.5967143534947,81.9517307574794,70.7543109708254,18.8057260245888,27.5416032991439,34.1043825806536,0,0,0,0,0,1.84968792705877,1.59426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0.111443384277478,0,0,0.296964680832639,0,0,0,0,0,0,0.597743964753209,19.6161580027115,0,0,0,0,0,0,0,1.38100767891707,14.3689855408164,0,0,0.0927680981618513,0,0,0,1.44999915086959,0.1137934482855,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.692552326534174,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.76915129006678,4.888241159469,0,0,0,0.067401132980677,3.21031058919516,0,0,0,0,0,10.8891644443797,0,1.20054501294127,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,1.26085721434945,0,0.225980740780532,0,0,0.189932387867636,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0.223171457441873,1.20930250476107,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0.0607495566580247,0,1.02447419488958,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.129282956361551,0,0,0,2.56289790162467,3.77290332239198,2.07119527673598,55.5705944429385,0,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,1.36402216187572,0.398594520940089,0,0,0,0,1.19992437512958,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,2.74128883428591,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0.913158720509496,0,0,0.285906176706625,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,4.24457869593696,3.71551252856727,0,0,0,0,0,0.4226557275834,0,14.8494590408169,12.956035482689,0,0,0,0,4.3820183294791,7.33966853447265,0.143339583151451,0,0,0,12.6966441723696,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,2.77204176471275,1.66645102024618,12.8531930573652,25.4506328613017,0,0.25458863311266,1.0105859447911,0,0,20.8117843815075,2.79716601031438,0,0,0,0,0,0,0.488965776731466,0,0.665756774185513,16.5044510744641,0 | |||
|short_description=p1@TXK | |||
}} |
Latest revision as of 22:28, 17 September 2015
Short description: | p1@TXK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TXK_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000264316, ENST00000510457, NM_003328, uc003gxx.3, uc003gxy.1_5end |
EntrezGene: | TXK |
HGNC: | 12434 |
UniProt: | P42681 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.53e-34 | 18 |
alpha-beta T cell | 3.53e-34 | 18 |
immature T cell | 3.53e-34 | 18 |
mature T cell | 3.53e-34 | 18 |
immature alpha-beta T cell | 3.53e-34 | 18 |
T cell | 1.34e-30 | 25 |
pro-T cell | 1.34e-30 | 25 |
CD8-positive, alpha-beta T cell | 1.42e-21 | 11 |
leukocyte | 6.35e-20 | 136 |
lymphoid lineage restricted progenitor cell | 3.72e-17 | 52 |
lymphocyte | 1.09e-16 | 53 |
common lymphoid progenitor | 1.09e-16 | 53 |
nongranular leukocyte | 6.98e-15 | 115 |
hematopoietic stem cell | 1.50e-13 | 168 |
CD4-positive, alpha-beta T cell | 1.22e-12 | 6 |
hematopoietic cell | 3.35e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 6.14e-11 | 120 |
hematopoietic oligopotent progenitor cell | 5.38e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.38e-10 | 161 |
granulocyte | 1.84e-07 | 8 |
naive T cell | 3.38e-07 | 3 |
single nucleate cell | 5.33e-07 | 3 |
mononuclear cell | 5.33e-07 | 3 |
natural killer cell | 5.99e-07 | 3 |
pro-NK cell | 5.99e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.98e-17 | 15 |
haemolymphatic fluid | 4.98e-17 | 15 |
organism substance | 4.98e-17 | 15 |
hemopoietic organ | 1.53e-09 | 7 |
immune organ | 1.53e-09 | 7 |
hemolymphoid system | 1.38e-08 | 108 |
hematopoietic system | 1.56e-08 | 98 |
blood island | 1.56e-08 | 98 |
thymus | 3.33e-08 | 4 |
hemolymphoid system gland | 3.33e-08 | 4 |
thymic region | 3.33e-08 | 4 |
pharyngeal gland | 3.33e-08 | 4 |
thymus primordium | 3.33e-08 | 4 |