FFCP PHASE1:Hg19::chr15:48413179..48413208,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=283652 | |EntrezGene=283652 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20611 | |HGNC=20611 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000482911_5end | |association_with_transcript=0bp_to_ENST00000482911_5end | ||
|cluster_id=chr15:48413179..48413208,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_1_at_SLC24A5_5end | |description=CAGE_peak_1_at_SLC24A5_5end | ||
|id=chr15:48413179..48413208,+ | |id=chr15:48413179..48413208,+ | ||
|ontology_enrichment_celltype=CL:0000147!7.24e-38!14;CL:0000148!7.43e-28!10;CL:0000541!7.43e-28!10;CL:0000325!8.21e-17!39;CL:0000710!9.95e-13!20;CL:0000149!2.42e-12!4;CL:0000075!1.10e-10!27;CL:0002077!7.35e-10!33;CL:0002567!8.75e-10!3;CL:0002586!1.45e-09!3;CL:0002322!1.21e-08!5;CL:0000333!8.46e-07!41 | |ontology_enrichment_celltype=CL:0000147!7.24e-38!14;CL:0000148!7.43e-28!10;CL:0000541!7.43e-28!10;CL:0000325!8.21e-17!39;CL:0000710!9.95e-13!20;CL:0000149!2.42e-12!4;CL:0000075!1.10e-10!27;CL:0002077!7.35e-10!33;CL:0002567!8.75e-10!3;CL:0002586!1.45e-09!3;CL:0002322!1.21e-08!5;CL:0000333!8.46e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000147;7.91e-66;14!CL:0000148;1.61e-49;10!CL:0000149;1.68e-31;4!CL:0002567;2.26e-24;3!CL:0000710;2.90e-24;20!CL:0002586;9.24e-24;3!CL:0000075;1.06e-17;27!CL:0002077;2.22e-12;34!CL:0002566;1.74e-09;1!CL:0000453;5.91e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,8.42e-66,14;CL:0000148,1.71e-49,10;CL:0000541,1.71e-49,10;CL:0000149,1.68e-31,4;CL:0002567,2.26e-24,3;CL:0000710,2.99e-24,20;CL:0002586,9.24e-24,3;CL:0000075,1.09e-17,27;CL:0002077,7.98e-14,34;CL:0000333,1.06e-10,41;CL:0002566,1.74e-09,1;CL:0000133,3.23e-07,59;CL:0000453,5.82e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0004874;9.91e-09;1 | |||
|ontology_enrichment_disease=DOID:1909!4.61e-07!2 | |ontology_enrichment_disease=DOID:1909!4.61e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;7.90e-17;2!DOID:5409;1.58e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,7.90e-17,2;DOID:5409,1.58e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.04e-21!86;UBERON:0003075!4.16e-19!86;UBERON:0007284!4.16e-19!86;UBERON:0000073!6.75e-19!94;UBERON:0001016!6.75e-19!94;UBERON:0002346!6.51e-18!90;UBERON:0001017!2.22e-16!82;UBERON:0001049!7.66e-16!57;UBERON:0005068!7.66e-16!57;UBERON:0006241!7.66e-16!57;UBERON:0007135!7.66e-16!57;UBERON:0000966!2.62e-14!5;UBERON:0005388!2.62e-14!5;UBERON:0001802!2.62e-14!5;UBERON:0001894!4.60e-14!7;UBERON:0006222!4.60e-14!7;UBERON:0007023!3.00e-13!115;UBERON:0003056!3.41e-13!61;UBERON:0004121!6.66e-13!169;UBERON:0000924!2.17e-12!173;UBERON:0006601!2.17e-12!173;UBERON:0003296!6.39e-12!4;UBERON:0010133!6.39e-12!4;UBERON:0000955!1.50e-11!69;UBERON:0006238!1.50e-11!69;UBERON:0002616!1.35e-10!59;UBERON:0003076!4.43e-10!15;UBERON:0003057!4.43e-10!15;UBERON:0000153!7.42e-10!129;UBERON:0007811!7.42e-10!129;UBERON:0000033!9.03e-10!123;UBERON:0001781!1.45e-09!3;UBERON:0001782!1.45e-09!3;UBERON:0005424!1.45e-09!3;UBERON:0002240!4.62e-09!3;UBERON:0002780!1.01e-08!41;UBERON:0001890!1.01e-08!41;UBERON:0006240!1.01e-08!41;UBERON:0003080!1.91e-08!42;UBERON:0002298!3.92e-08!8;UBERON:0000020!4.62e-08!23;UBERON:0001032!1.19e-07!24;UBERON:0004456!1.19e-07!24;UBERON:0000970!1.29e-07!20;UBERON:0002104!3.48e-07!21;UBERON:0001905!5.48e-07!2;UBERON:0002757!5.48e-07!2;UBERON:0010134!5.48e-07!2;UBERON:0002784!5.48e-07!2;UBERON:0005408!5.48e-07!2;UBERON:0001899!5.48e-07!2 | |ontology_enrichment_uberon=UBERON:0005743!1.04e-21!86;UBERON:0003075!4.16e-19!86;UBERON:0007284!4.16e-19!86;UBERON:0000073!6.75e-19!94;UBERON:0001016!6.75e-19!94;UBERON:0002346!6.51e-18!90;UBERON:0001017!2.22e-16!82;UBERON:0001049!7.66e-16!57;UBERON:0005068!7.66e-16!57;UBERON:0006241!7.66e-16!57;UBERON:0007135!7.66e-16!57;UBERON:0000966!2.62e-14!5;UBERON:0005388!2.62e-14!5;UBERON:0001802!2.62e-14!5;UBERON:0001894!4.60e-14!7;UBERON:0006222!4.60e-14!7;UBERON:0007023!3.00e-13!115;UBERON:0003056!3.41e-13!61;UBERON:0004121!6.66e-13!169;UBERON:0000924!2.17e-12!173;UBERON:0006601!2.17e-12!173;UBERON:0003296!6.39e-12!4;UBERON:0010133!6.39e-12!4;UBERON:0000955!1.50e-11!69;UBERON:0006238!1.50e-11!69;UBERON:0002616!1.35e-10!59;UBERON:0003076!4.43e-10!15;UBERON:0003057!4.43e-10!15;UBERON:0000153!7.42e-10!129;UBERON:0007811!7.42e-10!129;UBERON:0000033!9.03e-10!123;UBERON:0001781!1.45e-09!3;UBERON:0001782!1.45e-09!3;UBERON:0005424!1.45e-09!3;UBERON:0002240!4.62e-09!3;UBERON:0002780!1.01e-08!41;UBERON:0001890!1.01e-08!41;UBERON:0006240!1.01e-08!41;UBERON:0003080!1.91e-08!42;UBERON:0002298!3.92e-08!8;UBERON:0000020!4.62e-08!23;UBERON:0001032!1.19e-07!24;UBERON:0004456!1.19e-07!24;UBERON:0000970!1.29e-07!20;UBERON:0002104!3.48e-07!21;UBERON:0001905!5.48e-07!2;UBERON:0002757!5.48e-07!2;UBERON:0010134!5.48e-07!2;UBERON:0002784!5.48e-07!2;UBERON:0005408!5.48e-07!2;UBERON:0001899!5.48e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.47e-25;5!UBERON:0005388;4.47e-25;5!UBERON:0001802;4.47e-25;5!UBERON:0001781;9.24e-24;3!UBERON:0001782;9.24e-24;3!UBERON:0001905;1.27e-16;2!UBERON:0002757;1.27e-16;2!UBERON:0010134;1.27e-16;2!UBERON:0005408;1.27e-16;2!UBERON:0001899;1.27e-16;2!UBERON:0000970;1.51e-09;20!UBERON:0002104;4.38e-09;21!UBERON:0003296;9.20e-09;4!UBERON:0010133;9.20e-09;4!UBERON:0002784;9.20e-09;4!UBERON:0000989;9.91e-09;1!UBERON:0008811;9.91e-09;1!UBERON:0000020;2.81e-08;23!UBERON:0001032;6.35e-08;24!UBERON:0004456;6.35e-08;24!UBERON:0007625;7.36e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,9.24e-24,3;UBERON:0005424,9.24e-24,3;UBERON:0000966,6.05e-21,6;UBERON:0005388,6.05e-21,6;UBERON:0001802,6.05e-21,6;UBERON:0001781,5.56e-18,4;UBERON:0001905,1.27e-16,2;UBERON:0002757,1.27e-16,2;UBERON:0010134,1.27e-16,2;UBERON:0005408,1.27e-16,2;UBERON:0001899,1.27e-16,2;UBERON:0000970,4.38e-09,21;UBERON:0002104,4.38e-09,21;UBERON:0000989,8.49e-09,1;UBERON:0008811,8.49e-09,1;UBERON:0006258,8.49e-09,1;UBERON:0005876,8.49e-09,1;UBERON:0004874,8.49e-09,1;UBERON:0003296,9.20e-09,4;UBERON:0010133,9.20e-09,4;UBERON:0002784,9.20e-09,4;UBERON:0000020,6.35e-08,24;UBERON:0001032,6.35e-08,24;UBERON:0004456,6.35e-08,24;UBERON:0007625,7.36e-07,11 | |||
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| ||
|short_description=p1@SLC24A5 | |short_description=p1@SLC24A5 | ||
}} | }} |
Latest revision as of 21:37, 17 September 2015
Short description: | p1@SLC24A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC24A5_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000482911_5end |
EntrezGene: | SLC24A5 |
HGNC: | 20611 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 8.42e-66 | 14 |
melanocyte | 1.71e-49 | 10 |
melanoblast | 1.71e-49 | 10 |
visual pigment cell | 1.68e-31 | 4 |
light melanocyte | 2.26e-24 | 3 |
neurecto-epithelial cell | 2.99e-24 | 20 |
retinal pigment epithelial cell | 9.24e-24 | 3 |
columnar/cuboidal epithelial cell | 1.09e-17 | 27 |
ecto-epithelial cell | 7.98e-14 | 34 |
migratory neural crest cell | 1.06e-10 | 41 |
dark melanocyte | 1.74e-09 | 1 |
neurectodermal cell | 3.23e-07 | 59 |
Langerhans cell | 5.82e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 9.24e-24 | 3 |
presumptive retinal pigmented epithelium | 9.24e-24 | 3 |
retina | 6.05e-21 | 6 |
photoreceptor array | 6.05e-21 | 6 |
posterior segment of eyeball | 6.05e-21 | 6 |
layer of retina | 5.56e-18 | 4 |
pineal body | 1.27e-16 | 2 |
regional part of epithalamus | 1.27e-16 | 2 |
secretory circumventricular organ | 1.27e-16 | 2 |
circumventricular organ | 1.27e-16 | 2 |
epithalamus | 1.27e-16 | 2 |
eye | 4.38e-09 | 21 |
visual system | 4.38e-09 | 21 |
penis | 8.49e-09 | 1 |
intromittent organ | 8.49e-09 | 1 |
lateral plate mesenchyme | 8.49e-09 | 1 |
undifferentiated genital tubercle | 8.49e-09 | 1 |
somatopleure | 8.49e-09 | 1 |
gland of diencephalon | 9.20e-09 | 4 |
neuroendocrine gland | 9.20e-09 | 4 |
regional part of diencephalon | 9.20e-09 | 4 |
sense organ | 6.35e-08 | 24 |
sensory system | 6.35e-08 | 24 |
entire sense organ system | 6.35e-08 | 24 |
pigment epithelium of eye | 7.36e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
melanoma | 7.90e-17 | 2 |
lung small cell carcinoma | 1.58e-08 | 4 |